Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO367G0584 Selaginella moellendorffii HOM05D003431 ORTHO05D005152 2.6e-124 448.7 228 100.0
PSO339G0293 Papaver somniferum HOM05D003431 ORTHO05D005152 8.2e-86 320.9 219 69.9
PSO801G0645 Papaver somniferum HOM05D003431 ORTHO05D005152 1.4e-85 320.1 219 69.9
Haze_13054 Corylus avellana HOM05D003431 ORTHO05D005152 2.4e-85 319.3 216 70.4
Glyma.08G184300 Glycine max HOM05D003431 ORTHO05D005152 2.4e-85 319.3 216 69.9
arahy.Tifrunner.gnm1.ann1.I5HCXG Arachis hypogaea HOM05D003431 ORTHO05D005152 3.1e-85 318.9 222 68.5
Aqoxy4G02442 Aquilegia oxysepala HOM05D003431 ORTHO05D005152 4.0e-85 318.5 218 69.7
Migut.B00667 Erythranthe guttata HOM05D003431 ORTHO05D005152 4.0e-85 318.5 218 69.3
TWI14G0641 Tripterygium wilfordii HOM05D003431 ORTHO05D005152 4.0e-85 318.5 216 71.8
vmacro01777 Vaccinium macrocarpon HOM05D003431 ORTHO05D005152 4.0e-85 318.5 218 69.3
Dinv24261 Davidia involucrata HOM05D003431 ORTHO05D005152 5.3e-85 318.2 218 69.3
Pp3c11_25500 Physcomitrium patens HOM05D003431 ORTHO05D005152 1.5e-84 316.6 224 70.1
PSO170G4153 Papaver somniferum HOM05D003431 ORTHO05D005152 2.6e-84 315.8 218 69.3
Lsat_1_v5_gn_7_77981 Lactuca sativa HOM05D003431 ORTHO05D005152 4.5e-84 315.1 216 68.1
Actinidia39056 Actinidia chinensis HOM05D003431 ORTHO05D005152 5.8e-84 314.7 218 67.9
RcHm_v2.0_Chr7g0224251 Rosa chinensis HOM05D003431 ORTHO05D005152 7.6e-84 314.3 216 69.0
DCAR_013995 Daucus carota HOM05D003431 ORTHO05D005152 1.0e-83 313.9 218 67.4
Manes.07G013300 Manihot esculenta HOM05D003431 ORTHO05D005152 1.0e-83 313.9 221 66.5
Solyc01g104470.3 Solanum lycopersicum HOM05D003431 ORTHO05D005152 1.3e-83 313.5 218 67.9
PGSC0003DMG400023745 Solanum tuberosum HOM05D003431 ORTHO05D005152 1.3e-83 313.5 218 67.9
Lj6g0011327 Lotus japonicus HOM05D003431 ORTHO05D005152 1.7e-83 313.2 216 70.4
Lalb_Chr18g0060821 Lupinus albus HOM05D003431 ORTHO05D005152 1.7e-83 313.2 216 69.0
MBI15_g28822_MAGBIO Magnolia biondii HOM05D003431 ORTHO05D005152 1.7e-83 313.2 218 69.7
TAR633G0411 Trochodendron aralioides HOM05D003431 ORTHO05D005152 1.7e-83 313.2 218 68.8
Duzib132G0664 Durio zibethinus HOM05D003431 ORTHO05D005152 2.2e-83 312.8 218 67.9
Hma1.2p1_0557F.1_g178330 Hydrangea macrophylla HOM05D003431 ORTHO05D005152 2.2e-83 312.8 218 67.4
Hma1.2p1_2850F.1_g329406 Hydrangea macrophylla HOM05D003431 ORTHO05D005152 2.2e-83 312.8 218 67.4
Cfa014508 Carpinus fangiana HOM05D003431 ORTHO05D005152 2.9e-83 312.4 216 68.5
PSO017G6291 Papaver somniferum HOM05D003431 ORTHO05D005152 2.9e-83 312.4 218 68.8
Peaxi162Scf00011g00014 Petunia axillaris HOM05D003431 ORTHO05D005152 3.8e-83 312.0 218 67.0
Sopen01g046970 Solanum pennellii HOM05D003431 ORTHO05D005152 4.9e-83 311.6 218 67.4
CANSAT11G1865 Cannabis sativa HOM05D003431 ORTHO05D005152 6.5e-83 311.2 216 69.0
TWI23G0077 Tripterygium wilfordii HOM05D003431 ORTHO05D005152 6.5e-83 311.2 216 69.9
CSS0006665 Camellia sinensis var. sinensis HOM05D003431 ORTHO05D005152 8.4e-83 310.8 218 68.3
MD15G1418800 Malus domestica HOM05D003431 ORTHO05D005152 1.4e-82 310.1 215 68.4
VMungo0540G2199 Vigna mungo HOM05D003431 ORTHO05D005152 1.4e-82 310.1 216 68.1
Lj9A308T36 Lonicera japonica HOM05D003431 ORTHO05D005152 1.9e-82 309.7 218 68.8
Potri.011G156300 Populus trichocarpa HOM05D003431 ORTHO05D005152 1.9e-82 309.7 218 66.1
Ca_00090_v3 Cicer arietinum L. HOM05D003431 ORTHO05D005152 2.5e-82 309.3 216 68.5
Ca_29929_v3 Cicer arietinum L. HOM05D003431 ORTHO05D005152 2.5e-82 309.3 216 68.5
Oeu000195.1 Olea europaea HOM05D003431 ORTHO05D005152 2.5e-82 309.3 218 66.5
Pp3s128_30 Physcomitrium patens HOM05D003431 ORTHO05D005152 2.5e-82 309.3 225 68.0
GSVIVG01023018001 Vitis vinifera HOM05D003431 ORTHO05D005152 2.5e-82 309.3 218 68.3
FAN08G2387 Fragaria x ananassa HOM05D003431 ORTHO05D005152 3.2e-82 308.9 216 67.6
Glyma.15G048200 Glycine max HOM05D003431 ORTHO05D005152 3.2e-82 308.9 216 67.6
MD08G1225200 Malus domestica HOM05D003431 ORTHO05D005152 3.2e-82 308.9 215 67.9
TPR.G39937 Trifolium pratense HOM05D003431 ORTHO05D005152 3.2e-82 308.9 217 69.1
CDE12G0598 Ceratophyllum demersum HOM05D003431 ORTHO05D005152 4.2e-82 308.5 218 66.5
SGA_v2.0_scaffold1G00326 Striga asiatica HOM05D003431 ORTHO05D005152 4.2e-82 308.5 216 68.1
FAN13G1098 Fragaria x ananassa HOM05D003431 ORTHO05D005152 7.1e-82 307.8 216 67.1
HanXRQChr01g0021831 Helianthus annuus HOM05D003431 ORTHO05D005152 7.1e-82 307.8 216 66.7
HanXRQChr03g0066511 Helianthus annuus HOM05D003431 ORTHO05D005152 7.1e-82 307.8 216 66.7
Psat1g220040 Pisum sativum HOM05D003431 ORTHO05D005152 7.1e-82 307.8 216 67.6
Prupe.1G562900 Prunus persica HOM05D003431 ORTHO05D005152 7.1e-82 307.8 216 68.1
Duzib248G1379 Durio zibethinus HOM05D003431 ORTHO05D005152 9.3e-82 307.4 218 67.0
Rhsim11G0131700 Rhododendron simsii HOM05D003431 ORTHO05D005152 9.3e-82 307.4 218 66.5
SalBow6G0908 Salvia bowleyana HOM05D003431 ORTHO05D005152 9.3e-82 307.4 218 65.1
ATR0174G027 Amborella trichopoda HOM05D003431 ORTHO05D005152 1.2e-81 307.0 218 68.3
Potri.001G460100 Populus trichocarpa HOM05D003431 ORTHO05D005152 1.6e-81 306.6 218 65.6
Gohir.A01G176900 Gossypium hirsutum HOM05D003431 ORTHO05D005152 2.1e-81 306.2 218 66.1
Gohir.D01G167700 Gossypium hirsutum HOM05D003431 ORTHO05D005152 2.1e-81 306.2 218 66.1
Manes.10G132200 Manihot esculenta HOM05D003431 ORTHO05D005152 2.1e-81 306.2 227 62.6
Thecc.02G041300 Theobroma cacao HOM05D003431 ORTHO05D005152 2.1e-81 306.2 218 66.1
ECA236G3864 Erigeron canadensis HOM05D003431 ORTHO05D005152 2.7e-81 305.8 216 67.1
MSTRG.16533 Avicennia marina HOM05D003431 ORTHO05D005152 4.6e-81 305.1 218 65.6
Gorai.002G208400 Gossypium raimondii HOM05D003431 ORTHO05D005152 4.6e-81 305.1 218 65.6
PGR142G4046 Punica granatum HOM05D003431 ORTHO05D005152 4.6e-81 305.1 216 66.7
QL02p098641 Quercus lobata HOM05D003431 ORTHO05D005152 4.6e-81 305.1 222 66.2
Atru.chr6.1079 Acer truncatum HOM05D003431 ORTHO05D005152 7.9e-81 304.3 218 64.7
Mapoly0015s0017 Marchantia polymorpha HOM05D003431 ORTHO05D005152 1.0e-80 303.9 222 67.1
Atru.chr6.1030 Acer truncatum HOM05D003431 ORTHO05D005152 1.3e-80 303.5 218 64.7
Phvul.006G212200 Phaseolus vulgaris HOM05D003431 ORTHO05D005152 1.3e-80 303.5 216 67.1
AagrBONN_evm.TU.Sc2ySwM_369.396 Anthoceros agrestis HOM05D003431 ORTHO05D005152 1.8e-80 303.1 218 66.5
Eucgr.I02710 Eucalyptus grandis HOM05D003431 ORTHO05D005152 1.8e-80 303.1 216 67.1
Nitab4.5_0010140g0020 Nicotiana tabacum HOM05D003431 ORTHO05D005152 2.3e-80 302.8 218 66.1
Sabra11G0143500 Salix brachista HOM05D003431 ORTHO05D005152 3.9e-80 302.0 218 64.2
Hma1.2p1_0557F.1_g178340 Hydrangea macrophylla HOM05D003431 ORTHO05D005152 6.7e-80 301.2 209 67.0
Sc11g0006640 Simmondsia chinensis HOM05D003431 ORTHO05D005152 6.7e-80 301.2 227 62.6
Ciclev10002376m.g Citrus clementina HOM05D003431 ORTHO05D005152 8.7e-80 300.8 218 65.6
Sabra16G0311800 Salix brachista HOM05D003431 ORTHO05D005152 8.7e-80 300.8 218 64.7
Cpa.g.sc2.27 Carica papaya HOM05D003431 ORTHO05D005152 1.9e-79 299.7 216 66.2
CiPaw.05G042700 Carya illinoinensis HOM05D003431 ORTHO05D005152 1.9e-79 299.7 216 65.3
BcaC05g26690 Brassica carinata HOM05D003431 ORTHO05D005152 4.3e-79 298.5 218 64.2
THA.LOC104807949 Tarenaya hassleriana HOM05D003431 ORTHO05D005152 4.3e-79 298.5 218 64.7
unitig_22.g6119 Utricularia gibba HOM05D003431 ORTHO05D005152 5.7e-79 298.1 218 64.2
CiPaw.06G149000 Carya illinoinensis HOM05D003431 ORTHO05D005152 9.7e-79 297.4 211 67.8
Cc02_g22270 Coffea canephora HOM05D003431 ORTHO05D005152 1.3e-78 297.0 216 65.7
BcaB03g12039 Brassica carinata HOM05D003431 ORTHO05D005152 2.2e-78 296.2 218 64.2
Aa31LG7G9280 Aethionema arabicum HOM05D003431 ORTHO05D005152 8.2e-78 294.3 218 63.8
C05p25340 Brassica napus HOM05D003431 ORTHO05D005152 8.2e-78 294.3 218 63.8
A09p39090 Brassica napus HOM05D003431 ORTHO05D005152 1.4e-77 293.5 218 63.8
BraA09t39409Z Brassica rapa HOM05D003431 ORTHO05D005152 1.4e-77 293.5 218 63.8
AUR62020868 Chenopodium quinoa HOM05D003431 ORTHO05D005152 1.4e-77 293.5 218 65.1
A07p12440 Brassica napus HOM05D003431 ORTHO05D005152 2.4e-77 292.7 218 63.8
BraA07t29025Z Brassica rapa HOM05D003431 ORTHO05D005152 2.4e-77 292.7 218 63.8
BcaC01g01674 Brassica carinata HOM05D003431 ORTHO05D005152 4.1e-77 292.0 218 63.3
BcaC05g26486 Brassica carinata HOM05D003431 ORTHO05D005152 4.1e-77 292.0 218 63.3
BolC3t19610H Brassica oleracea HOM05D003431 ORTHO05D005152 4.1e-77 292.0 218 63.3
BraA08t34627Z Brassica rapa HOM05D003431 ORTHO05D005152 4.1e-77 292.0 218 63.3
Medtr2g007780 Medicago truncatula HOM05D003431 ORTHO05D005152 4.1e-77 292.0 209 67.0
BolC5t31269H Brassica oleracea HOM05D003431 ORTHO05D005152 6.9e-77 291.2 218 63.8
AUR62018551 Chenopodium quinoa HOM05D003431 ORTHO05D005152 6.9e-77 291.2 218 64.7
Thhalv10008680m.g Eutrema salsugineum HOM05D003431 ORTHO05D005152 9.0e-77 290.8 218 63.3
Lsat_1_v5_gn_9_116360 Lactuca sativa HOM05D003431 ORTHO05D005152 2.6e-76 289.3 204 68.6
CARHR026300 Cardamine hirsuta HOM05D003431 ORTHO05D005152 3.4e-76 288.9 218 63.3
Sp1g23030 Schrenkiella parvula HOM05D003431 ORTHO05D005152 3.4e-76 288.9 218 62.8
Hund24426 Selenicereus undatus HOM05D003431 ORTHO05D005152 4.5e-76 288.5 213 65.3
BcaB03g14023 Brassica carinata HOM05D003431 ORTHO05D005152 5.9e-76 288.1 226 61.5
HPP92_026977 Vanilla planifolia HOM05D003431 ORTHO05D005152 1.7e-75 286.6 218 61.9
Sed0006026 Sechium edule HOM05D003431 ORTHO05D005152 2.2e-75 286.2 216 62.0
Zm00001eb163260 Zea mays HOM05D003431 ORTHO05D005152 2.2e-75 286.2 219 63.5
Sed0002836 Sechium edule HOM05D003431 ORTHO05D005152 5.0e-75 285.0 216 61.6
HPP92_015419 Vanilla planifolia HOM05D003431 ORTHO05D005152 8.5e-75 284.3 218 61.9
C07p18390 Brassica napus HOM05D003431 ORTHO05D005152 1.1e-74 283.9 209 63.6
Zm00001eb094240 Zea mays HOM05D003431 ORTHO05D005152 1.1e-74 283.9 219 63.0
A08p26810 Brassica napus HOM05D003431 ORTHO05D005152 1.4e-74 283.5 209 63.2
arahy.Tifrunner.gnm1.ann1.N8P1ZJ Arachis hypogaea HOM05D003431 ORTHO05D005152 1.9e-74 283.1 231 61.5
C03p73140 Brassica napus HOM05D003431 ORTHO05D005152 2.5e-74 282.7 209 63.2
BcaC06g35235 Brassica carinata HOM05D003431 ORTHO05D005152 3.2e-74 282.3 208 63.5
EL10Ac3g07449 Beta vulgaris HOM05D003431 ORTHO05D005152 4.2e-74 282.0 218 61.5
CsaV3_2G018120 Cucumis sativus L. HOM05D003431 ORTHO05D005152 4.2e-74 282.0 223 59.6
Os11g0105400 Oryza sativa ssp. japonica HOM05D003431 ORTHO05D005152 4.2e-74 282.0 219 63.5
FvH4_5g30060 Fragaria vesca HOM05D003431 ORTHO05D005152 5.5e-74 281.6 193 69.4
FAN04G1904 Fragaria x ananassa HOM05D003431 ORTHO05D005152 5.5e-74 281.6 221 63.3
FAN18G1423 Fragaria x ananassa HOM05D003431 ORTHO05D005152 5.5e-74 281.6 221 63.8
AL1G40100 Arabidopsis lyrata HOM05D003431 ORTHO05D005152 3.6e-73 278.9 218 61.0
Nn2g13208 Nelumbo nucifera HOM05D003431 ORTHO05D005152 3.6e-73 278.9 191 70.7
AT1G25260 Arabidopsis thaliana HOM05D003431 ORTHO05D005152 4.6e-73 278.5 223 59.6
Os12g0105200 Oryza sativa ssp. japonica HOM05D003431 ORTHO05D005152 2.3e-72 276.2 210 64.3
BolC7t42349H Brassica oleracea HOM05D003431 ORTHO05D005152 5.1e-72 275.0 218 60.6
Carub.0001s2531 Capsella rubella HOM05D003431 ORTHO05D005152 1.3e-70 270.4 216 58.8
CDE06G1320 Ceratophyllum demersum HOM05D003431 ORTHO05D005152 6.3e-70 268.1 191 68.1
ClCG02G000650 Citrullus lanatus HOM05D003431 ORTHO05D005152 2.0e-68 263.1 219 59.4
TAR636G0765 Trochodendron aralioides HOM05D003431 ORTHO05D005152 4.5e-68 261.9 218 59.6
SHI16687 Sapria himalayana HOM05D003431 ORTHO05D005152 2.9e-67 259.2 213 62.0
CBR_g26270 Chara braunii HOM05D003431 ORTHO05D005152 1.5e-63 246.9 211 59.7
Nitab4.5_0005539g0060 Nicotiana tabacum HOM05D003431 ORTHO05D005152 2.6e-63 246.1 218 56.4
CAN.G1352.24 Capsicum annuum HOM05D003431 ORTHO05D005152 1.4e-61 240.4 263 48.3
MCO04G167 Micromonas commoda HOM05D003431 ORTHO05D005152 4.8e-54 215.3 214 47.2
Ah.04g149460 Amaranthus hybridus HOM05D003431 ORTHO05D005152 2.4e-53 213.0 218 52.8
Oeu026055.1 Olea europaea HOM05D003431 ORTHO05D005152 4.1e-53 212.2 153 64.1
Hma1.2p1_0217F.1_g091920 Hydrangea macrophylla HOM05D003431 ORTHO05D005152 2.9e-51 206.1 145 62.8
Cre06.g261700 Chlamydomonas reinhardtii HOM05D003431 ORTHO05D005152 1.3e-46 190.7 213 45.1
SGA_v2.0_scaffold110G31286 Striga asiatica HOM05D003431 ORTHO05D005152 3.5e-44 182.6 209 47.4
PRCOL_00006634 Prasinoderma coloniale HOM05D003431 ORTHO05D005152 4.4e-39 165.6 209 41.1
Cfa023894 Carpinus fangiana HOM05D003431 ORTHO05D005152 7.0e-37 158.3 222 38.7
Zm00001eb078820 Zea mays HOM05D003431 ORTHO05D005152 5.9e-36 155.2 120 61.7
MELO3C023261.2 Cucumis melo HOM05D003431 ORTHO05D005152 2.1e-33 146.7 108 61.1
SEGI_37042 Sequoiadendron giganteum HOM05D003431 ORTHO05D005152 1.4e-32 144.1 145 52.4
BolC5t29949H Brassica oleracea HOM05D003431 ORTHO05D005152 8.9e-32 141.4 142 52.8
Dinv19350 Davidia involucrata HOM05D003431 ORTHO05D005152 3.4e-31 139.4 113 59.3
Zm00001eb026620 Zea mays HOM05D003431 ORTHO05D005152 2.0e-28 130.2 82 73.2
COL.COLO4_17896 Corchorus olitorius HOM05D003431 ORTHO05D005152 3.4e-23 112.8 69 71.0
Dinv19351 Davidia involucrata HOM05D003431 ORTHO05D005152 9.2e-21 104.8 72 65.3
SEGI_29948 Sequoiadendron giganteum HOM05D003431 ORTHO05D005152 1.3e-19 100.9 70 70.0
C05p02190 Brassica napus HOM05D003431 ORTHO05D014368 1.7e-19 100.5 150 38.7
HanXRQChr10g0305141 Helianthus annuus HOM05D003431 ORTHO05D005152 2.3e-19 100.1 56 82.1
ATR0085G001 Amborella trichopoda HOM05D003431 ORTHO05D014368 5.0e-19 99.0 74 63.5
SEGI_34754 Sequoiadendron giganteum HOM05D003431 ORTHO05D005152 3.3e-18 96.3 66 74.2
A02p15310 Brassica napus HOM05D003431 ORTHO05D027670 2.1e-17 93.6 99 44.4
A04p21520 Brassica napus HOM05D003431 ORTHO05D027670 2.1e-17 93.6 99 44.4
BcaC06g34618 Brassica carinata HOM05D003431 ORTHO05D027670 4.7e-17 92.4 115 43.5
C07p26410 Brassica napus HOM05D003431 ORTHO05D027670 1.8e-16 90.5 99 43.4
BolC6t38529H Brassica oleracea HOM05D003431 ORTHO05D014368 3.1e-16 89.7 87 50.6
Hma1.2p1_1038F.1_g250760 Hydrangea macrophylla HOM05D003431 ORTHO05D005152 8.9e-16 88.2 65 69.2
BolC5t28997H Brassica oleracea HOM05D003431 ORTHO05D014368 2.0e-15 87.0 140 36.4
BcaC08g45659 Brassica carinata HOM05D003431 ORTHO05D014368 7.5e-15 85.1 77 53.2
TAR636G2181 Trochodendron aralioides HOM05D003431 ORTHO05D005152 1.1e-13 81.3 51 72.5
PSO063G0979 Papaver somniferum HOM05D003431 ORTHO05D305187 1.4e-13 80.9 152 34.9
BcaC07g37686 Brassica carinata HOM05D003431 ORTHO05D032197 1.6e-12 77.4 92 45.7
MELO3C034572.2 Cucumis melo HOM05D003431 ORTHO05D005152 1.6e-12 77.4 63 61.9
CARHR057180 Cardamine hirsuta HOM05D003431 ORTHO05D014368 2.1e-12 77.0 65 60.0
EL10Ac8g19160 Beta vulgaris HOM05D003431 ORTHO05D005152 3.3e-10 69.7 41 73.2
Actinidia00219 Actinidia chinensis HOM05D003431 ORTHO05D056071 9.5e-10 68.2 140 39.3
C06p34150 Brassica napus HOM05D003431 ORTHO05D014368 9.5e-10 68.2 66 50.0
PSO173G0151 Papaver somniferum HOM05D003431 ORTHO05D304616 1.6e-09 67.4 207 26.1
PSO017G6449 Papaver somniferum HOM05D003431 ORTHO05D303587 2.1e-09 67.0 130 33.8
TAR383G0190 Trochodendron aralioides HOM05D007171 ORTHO05D008946 2.8e-09 66.6 48 54.2
PSO170G0877 Papaver somniferum HOM05D003431 ORTHO05D304563 4.7e-09 65.9 116 31.0
BcaC05g27507 Brassica carinata HOM05D003431 ORTHO05D014368 4.0e-08 62.8 60 50.0
Cre12.g520500 Chlamydomonas reinhardtii HOM05D001932 ORTHO05D002319 4.0e-08 62.8 203 23.6
A05p19340 Brassica napus HOM05D003431 ORTHO05D014368 2.0e-07 60.5 60 48.3
BcaB08g35512 Brassica carinata HOM05D003431 ORTHO05D014368 9.9e-07 58.2 63 42.9
CsaV3_1G025580 Cucumis sativus L. HOM05D003431 ORTHO05D005152 1.7e-06 57.4 52 50.0
MCO12G365 Micromonas commoda HOM05D001932 ORTHO05D002319 1.7e-06 57.4 169 23.7
Hma1.2p1_1425F.1_g282850 Hydrangea macrophylla HOM05D003263 ORTHO05D004801 2.9e-06 56.6 44 50.0


User provided reference genes

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