Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO367G0154 Selaginella moellendorffii HOM05D006465 ORTHO05D008207 6.2e-64 247.3 124 100.0
Pp3c15_3010 Physcomitrium patens HOM05D006465 ORTHO05D008207 6.1e-27 124.4 105 58.1
AagrBONN_evm.TU.Sc2ySwM_117.2181 Anthoceros agrestis HOM05D006465 ORTHO05D008207 8.0e-27 124.0 121 52.9
Mapoly0113s0017 Marchantia polymorpha HOM05D006465 ORTHO05D008207 3.0e-26 122.1 114 52.6
Cc07_g18520 Coffea canephora HOM05D006465 ORTHO05D008207 7.5e-25 117.5 109 51.4
CAN.G934.1 Capsicum annuum HOM05D006465 ORTHO05D008207 9.7e-25 117.1 109 53.2
Peaxi162Scf00270g01115 Petunia axillaris HOM05D006465 ORTHO05D008207 2.2e-24 115.9 109 51.4
Duzib187G1992 Durio zibethinus HOM05D006465 ORTHO05D008207 3.7e-24 115.2 108 50.0
Sc07g0001830 Simmondsia chinensis HOM05D006465 ORTHO05D008207 6.3e-24 114.4 112 50.9
CARHR204090 Cardamine hirsuta HOM05D006465 ORTHO05D008207 8.2e-24 114.0 107 53.3
ECA247G0944 Erigeron canadensis HOM05D006465 ORTHO05D008207 8.2e-24 114.0 106 53.8
Sopen06g005870 Solanum pennellii HOM05D006465 ORTHO05D008207 8.2e-24 114.0 109 51.4
PGSC0003DMG400030138 Solanum tuberosum HOM05D006465 ORTHO05D008207 8.2e-24 114.0 109 51.4
CsaV3_2G018330 Cucumis sativus L. HOM05D006465 ORTHO05D008207 1.1e-23 113.6 105 51.4
Dinv07122 Davidia involucrata HOM05D006465 ORTHO05D008207 1.4e-23 113.2 108 50.0
vmacro12798 Vaccinium macrocarpon HOM05D006465 ORTHO05D008207 1.8e-23 112.8 108 52.8
HanXRQChr15g0491331 Helianthus annuus HOM05D006465 ORTHO05D008207 2.4e-23 112.5 108 51.9
Lj4A839G53 Lonicera japonica HOM05D006465 ORTHO05D008207 2.4e-23 112.5 108 50.0
A03p04100 Brassica napus HOM05D006465 ORTHO05D008207 3.1e-23 112.1 107 51.4
BolC3t12987H Brassica oleracea HOM05D006465 ORTHO05D008207 3.1e-23 112.1 107 51.4
BraA03t09753Z Brassica rapa HOM05D006465 ORTHO05D008207 3.1e-23 112.1 107 51.4
Hma1.2p1_0476F.1_g160840 Hydrangea macrophylla HOM05D006465 ORTHO05D008207 3.1e-23 112.1 108 51.9
Manes.03G123050 Manihot esculenta HOM05D006465 ORTHO05D008207 3.1e-23 112.1 108 50.9
Potri.005G063100 Populus trichocarpa HOM05D006465 ORTHO05D008207 3.1e-23 112.1 108 49.1
Ah.02g121490 Amaranthus hybridus HOM05D006465 ORTHO05D008207 4.1e-23 111.7 108 50.9
AT5G09310 Arabidopsis thaliana HOM05D006465 ORTHO05D008207 4.1e-23 111.7 107 52.3
Actinidia06618 Actinidia chinensis HOM05D006465 ORTHO05D008207 5.3e-23 111.3 112 48.2
Gohir.A05G384500 Gossypium hirsutum HOM05D005188 ORTHO05D006153 5.3e-23 111.3 108 50.9
PSO017G4081 Papaver somniferum HOM05D006465 ORTHO05D008207 5.3e-23 111.3 105 49.5
Psat5g062320 Pisum sativum HOM05D006465 ORTHO05D008207 5.3e-23 111.3 108 50.9
PGR119G2011 Punica granatum HOM05D006465 ORTHO05D008207 5.3e-23 111.3 108 50.9
THA.LOC104800074 Tarenaya hassleriana HOM05D006465 ORTHO05D008207 5.3e-23 111.3 109 50.5
HPP92_019397 Vanilla planifolia HOM05D006465 ORTHO05D008207 5.3e-23 111.3 122 49.2
C03p04560 Brassica napus HOM05D006465 ORTHO05D008207 7.0e-23 110.9 107 49.5
ClCG02G000500 Citrullus lanatus HOM05D006465 ORTHO05D008207 7.0e-23 110.9 105 50.5
AL6G19700 Arabidopsis lyrata HOM05D006465 ORTHO05D008207 9.1e-23 110.5 107 51.4
BcaB08g37219 Brassica carinata HOM05D006465 ORTHO05D008207 9.1e-23 110.5 107 50.5
Dinv24364 Davidia involucrata HOM05D006465 ORTHO05D008207 9.1e-23 110.5 108 49.1
Thhalv10014951m.g Eutrema salsugineum HOM05D006465 ORTHO05D008207 9.1e-23 110.5 107 50.5
PSO170G5905 Papaver somniferum HOM05D006465 ORTHO05D008207 9.1e-23 110.5 105 47.6
A10p27930 Brassica napus HOM05D006465 ORTHO05D008207 1.2e-22 110.2 106 51.9
BraA10t44842Z Brassica rapa HOM05D006465 ORTHO05D008207 1.2e-22 110.2 106 51.9
CDE04G1235 Ceratophyllum demersum HOM05D006465 ORTHO05D008207 1.2e-22 110.2 109 49.5
Gohir.D04G031000 Gossypium hirsutum HOM05D006465 ORTHO05D008207 1.2e-22 110.2 108 50.9
Gorai.012G035200 Gossypium raimondii HOM05D005188 ORTHO05D006153 1.2e-22 110.2 108 50.9
Sed0005537 Sechium edule HOM05D006465 ORTHO05D008207 1.2e-22 110.2 106 50.0
Lsat_1_v5_gn_9_25981 Lactuca sativa HOM05D006465 ORTHO05D008207 1.6e-22 109.8 107 50.5
MD07G1057500 Malus domestica HOM05D006465 ORTHO05D008207 1.6e-22 109.8 112 47.3
Sp6g34010 Schrenkiella parvula HOM05D006465 ORTHO05D008207 1.6e-22 109.8 107 49.5
Carub.0006s0786 Capsella rubella HOM05D006465 ORTHO05D008207 2.0e-22 109.4 107 50.5
Nn5g28548 Nelumbo nucifera HOM05D006465 ORTHO05D008207 2.0e-22 109.4 108 50.0
Nitab4.5_0000181g0060 Nicotiana tabacum HOM05D006465 ORTHO05D008207 2.0e-22 109.4 109 49.5
Sabra05G0052300 Salix brachista HOM05D006465 ORTHO05D008207 2.0e-22 109.4 108 47.2
Thecc.01G132600 Theobroma cacao HOM05D006465 ORTHO05D008207 2.7e-22 109.0 121 46.3
MSTRG.3605 Avicennia marina HOM05D006465 ORTHO05D008207 4.5e-22 108.2 112 48.2
CiPaw.04G082200 Carya illinoinensis HOM05D006465 ORTHO05D008207 4.5e-22 108.2 111 47.7
Migut.L00965 Erythranthe guttata HOM05D006465 ORTHO05D008207 4.5e-22 108.2 110 49.1
Hund23271 Selenicereus undatus HOM05D006465 ORTHO05D008207 4.5e-22 108.2 114 50.0
Ca_16948_v3 Cicer arietinum L. HOM05D002517 ORTHO05D003040 5.9e-22 107.8 108 50.0
Ca_16968_v3 Cicer arietinum L. HOM05D006465 ORTHO05D008207 5.9e-22 107.8 108 50.0
Haze_25235 Corylus avellana HOM05D006465 ORTHO05D008207 5.9e-22 107.8 112 47.3
EL10Ac6g15303 Beta vulgaris HOM05D006465 ORTHO05D008207 7.7e-22 107.5 112 48.2
SGA_v2.0_scaffold19G08773 Striga asiatica HOM05D006465 ORTHO05D008207 7.7e-22 107.5 110 48.2
Lj1g0025116 Lotus japonicus HOM05D006465 ORTHO05D008207 1.0e-21 107.1 109 50.5
Lalb_Chr08g0238351 Lupinus albus HOM05D006465 ORTHO05D008207 1.0e-21 107.1 112 50.9
unitig_88.g27767 Utricularia gibba HOM05D006465 ORTHO05D008207 1.0e-21 107.1 125 48.8
GSVIVG01026483001 Vitis vinifera HOM05D006465 ORTHO05D008207 1.0e-21 107.1 109 47.7
AUR62003565 Chenopodium quinoa HOM05D006465 ORTHO05D008207 1.3e-21 106.7 108 48.1
AUR62017880 Chenopodium quinoa HOM05D006465 ORTHO05D008207 1.3e-21 106.7 108 49.1
Phvul.009G150900 Phaseolus vulgaris HOM05D006465 ORTHO05D008207 1.3e-21 106.7 108 47.2
CSS0043698 Camellia sinensis var. sinensis HOM05D006465 ORTHO05D008207 1.7e-21 106.3 108 46.3
CBR_g29852 Chara braunii HOM05D006465 ORTHO05D008207 1.7e-21 106.3 100 50.0
Medtr3g096320 Medicago truncatula HOM05D006465 ORTHO05D008207 1.7e-21 106.3 108 47.2
TWI75G0808 Tripterygium wilfordii HOM05D006465 ORTHO05D008207 1.7e-21 106.3 108 47.2
Aa31LG3G17710 Aethionema arabicum HOM05D003132 ORTHO05D003736 2.2e-21 105.9 104 49.0
Ciclev10002814m.g Citrus clementina HOM05D006465 ORTHO05D008207 2.2e-21 105.9 108 48.1
TAR381G0246 Trochodendron aralioides HOM05D006465 ORTHO05D008207 2.2e-21 105.9 108 48.1
Aqoxy5G02229 Aquilegia oxysepala HOM05D006465 ORTHO05D000054 2.9e-21 105.5 109 47.7
SEGI_17702 Sequoiadendron giganteum HOM05D006465 ORTHO05D008207 5.0e-21 104.8 90 58.9
Atru.chr4.901 Acer truncatum HOM05D006465 ORTHO05D008207 6.5e-21 104.4 104 50.0
Migut.L00880 Erythranthe guttata HOM05D006465 ORTHO05D008207 6.5e-21 104.4 110 47.3
TPR.G28231 Trifolium pratense HOM05D006465 ORTHO05D008207 8.5e-21 104.0 108 48.1
TWI79G1280 Tripterygium wilfordii HOM05D006465 ORTHO05D008207 8.5e-21 104.0 108 46.3
VMungo1309G0274 Vigna mungo HOM05D006465 ORTHO05D008207 8.5e-21 104.0 104 47.1
CANSAT01G2296 Cannabis sativa HOM05D006465 ORTHO05D008207 1.5e-20 103.2 112 48.2
Glyma.06G153700 Glycine max HOM05D006465 ORTHO05D008207 1.9e-20 102.8 108 47.2
TAR625G1289 Trochodendron aralioides HOM05D006465 ORTHO05D008207 1.9e-20 102.8 108 49.1
Oeu050125.1 Olea europaea HOM05D006465 ORTHO05D008207 3.2e-20 102.1 113 46.0
Glyma.04G212600 Glycine max HOM05D006465 ORTHO05D008207 7.2e-20 100.9 108 47.2
Oeu004242.1 Olea europaea HOM05D006465 ORTHO05D008207 7.2e-20 100.9 113 46.0
FvH4_2g08820 Fragaria vesca HOM05D006465 ORTHO05D008207 1.2e-19 100.1 108 45.4
FAN10G0435 Fragaria x ananassa HOM05D006465 ORTHO05D008207 1.2e-19 100.1 108 45.4
FAN15G0521 Fragaria x ananassa HOM05D006465 ORTHO05D008207 1.2e-19 100.1 108 45.4
ATR0138G005 Amborella trichopoda HOM05D006465 ORTHO05D008207 2.7e-19 99.0 118 46.6
FAN24G0187 Fragaria x ananassa HOM05D006465 ORTHO05D008207 2.7e-19 99.0 99 48.5
Prupe.4G271100 Prunus persica HOM05D006465 ORTHO05D008207 2.7e-19 99.0 112 42.9
DCAR_014336 Daucus carota HOM05D006465 ORTHO05D008207 4.7e-19 98.2 113 45.1
RcHm_v2.0_Chr6g0264391 Rosa chinensis HOM05D006465 ORTHO05D008207 4.7e-19 98.2 112 44.6
arahy.Tifrunner.gnm1.ann1.X6LXMM Arachis hypogaea HOM05D006465 ORTHO05D008207 6.1e-19 97.8 117 43.6
Os01g0960000 Oryza sativa ssp. japonica HOM05D006465 ORTHO05D008207 1.0e-18 97.1 111 47.7
SalBow7G2903 Salvia bowleyana HOM05D006465 ORTHO05D008207 5.2e-18 94.7 124 42.7
MELO3C023238.2 Cucumis melo HOM05D006465 ORTHO05D008207 1.5e-17 93.2 133 39.8
Zm00001eb362550 Zea mays HOM05D006465 ORTHO05D008207 1.5e-17 93.2 108 45.4
arahy.Tifrunner.gnm1.ann1.Q2CXKS Arachis hypogaea HOM05D006465 ORTHO05D008207 4.4e-17 91.7 133 38.3
QL10p043584 Quercus lobata HOM05D006465 ORTHO05D008207 7.0e-15 84.3 158 33.5
Hund04414 Selenicereus undatus HOM05D006465 ORTHO05D008207 2.7e-14 82.4 160 33.8
FvH4_3g04510 Fragaria vesca HOM05D006465 ORTHO05D008207 5.9e-14 81.3 94 43.6
FAN11G3155 Fragaria x ananassa HOM05D006465 ORTHO05D008207 1.0e-13 80.5 94 43.6
Solyc06g016760.3 Solanum lycopersicum HOM05D006465 ORTHO05D008207 4.0e-10 68.6 47 59.6
MD02G1262600 Malus domestica HOM05D006465 ORTHO05D008207 6.8e-10 67.8 46 58.7
PRCOL_00001485 Prasinoderma coloniale HOM05D006465 ORTHO05D008207 7.5e-09 64.3 109 35.8
CDE12G0205 Ceratophyllum demersum HOM05D006465 ORTHO05D008207 4.9e-08 61.6 50 52.0
Potri.007G106200 Populus trichocarpa HOM05D006465 ORTHO05D008207 8.3e-08 60.8 88 42.0


User provided reference genes

Program Settings