Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO364G0055 Selaginella moellendorffii HOM05D003384 ORTHO05D018108 4.3e-56 221.1 112 100.0
SMO199G0120 Selaginella moellendorffii HOM05D003384 ORTHO05D376227 2.9e-44 181.8 108 89.8
SMO353G0102 Selaginella moellendorffii HOM05D003384 ORTHO05D018108 3.2e-35 151.8 95 85.3
SMO244G0098 Selaginella moellendorffii HOM05D003384 ORTHO05D376564 8.2e-31 137.1 79 92.4
SMO162G0012 Selaginella moellendorffii HOM05D003384 ORTHO05D375018 1.8e-22 109.4 59 94.9
SMO009G0025 Selaginella moellendorffii HOM05D003384 ORTHO05D378488 2.0e-21 105.9 61 91.8
SMO036G0002 Selaginella moellendorffii HOM05D003384 ORTHO05D374652 5.9e-21 104.4 61 90.2
SMO077G0006 Selaginella moellendorffii HOM05D003384 ORTHO05D018108 5.9e-21 104.4 61 90.2
SMO286G0018 Selaginella moellendorffii HOM05D003384 ORTHO05D018108 1.0e-17 93.6 51 96.1
SMO112G0025 Selaginella moellendorffii HOM05D003384 ORTHO05D378420 1.2e-16 90.1 51 92.2
SMO353G0290 Selaginella moellendorffii HOM05D003384 ORTHO05D018108 1.2e-16 90.1 51 92.2
SMO358G0063 Selaginella moellendorffii HOM05D003384 ORTHO05D005024 4.8e-15 84.7 109 50.5
Pp3c6_8600 Physcomitrium patens HOM05D003384 ORTHO05D005024 5.0e-12 74.7 109 45.9
Mapoly0047s0031 Marchantia polymorpha HOM05D003384 ORTHO05D005024 5.5e-11 71.2 109 45.0
AagrBONN_evm.TU.Sc2ySwM_344.2607 Anthoceros agrestis HOM05D003384 ORTHO05D005024 7.2e-11 70.9 109 41.3
Os01g0888500 Oryza sativa ssp. japonica HOM05D003384 ORTHO05D005024 7.2e-11 70.9 79 50.6
MELO3C018382.2 Cucumis melo HOM05D003384 ORTHO05D005024 1.2e-10 70.1 109 43.1
CsaV3_5G010490 Cucumis sativus L. HOM05D003384 ORTHO05D005024 1.2e-10 70.1 109 43.1
Sed0002627 Sechium edule HOM05D003384 ORTHO05D005024 1.2e-10 70.1 78 52.6
Zm00001eb055170 Zea mays HOM05D003384 ORTHO05D005024 1.2e-10 70.1 78 51.3
Os05g0104650 Oryza sativa ssp. japonica HOM05D003384 ORTHO05D005024 2.7e-10 68.9 79 49.4
SEGI_27631 Sequoiadendron giganteum HOM05D003384 ORTHO05D005024 2.7e-10 68.9 79 48.1
CBR_g19873 Chara braunii HOM05D003384 ORTHO05D005024 4.7e-10 68.2 79 49.4
Zm00001eb067720 Zea mays HOM05D003384 ORTHO05D005024 4.7e-10 68.2 78 50.0
ATR0580G036 Amborella trichopoda HOM05D003384 ORTHO05D005024 6.1e-10 67.8 79 48.1
Peaxi162Scf00685g00122 Petunia axillaris HOM05D003384 ORTHO05D005024 6.1e-10 67.8 79 46.8
PSO478G4441 Papaver somniferum HOM05D003384 ORTHO05D005024 8.0e-10 67.4 78 50.0
PSO782G4051 Papaver somniferum HOM05D003384 ORTHO05D005024 8.0e-10 67.4 78 50.0
Thecc.05G055600 Theobroma cacao HOM05D003384 ORTHO05D005024 8.0e-10 67.4 79 48.1
Gohir.A06G008900 Gossypium hirsutum HOM05D003384 ORTHO05D005024 1.0e-09 67.0 79 46.8
MBI14_g11677_MAGBIO Magnolia biondii HOM05D003384 ORTHO05D005024 1.0e-09 67.0 79 46.8
HPP92_005602 Vanilla planifolia HOM05D003384 ORTHO05D005024 1.0e-09 67.0 79 48.1
CAN.G606.41 Capsicum annuum HOM05D003384 ORTHO05D005024 1.4e-09 66.6 79 48.1
Migut.F00756 Erythranthe guttata HOM05D003384 ORTHO05D005024 1.4e-09 66.6 79 46.8
Peaxi162Scf00668g00439 Petunia axillaris HOM05D003384 ORTHO05D005024 1.4e-09 66.6 79 45.6
CDE05G0219 Ceratophyllum demersum HOM05D003384 ORTHO05D005024 1.8e-09 66.2 79 46.8
CDE05G1365 Ceratophyllum demersum HOM05D003384 ORTHO05D005024 1.8e-09 66.2 79 46.8
Duzib093G0913 Durio zibethinus HOM05D003384 ORTHO05D005024 1.8e-09 66.2 79 46.8
HanXRQChr08g0232581 Helianthus annuus HOM05D003384 ORTHO05D005024 1.8e-09 66.2 102 41.2
Oeu001502.2 Olea europaea HOM05D003384 ORTHO05D005024 1.8e-09 66.2 79 46.8
Phvul.009G004700 Phaseolus vulgaris HOM05D003384 ORTHO05D005024 1.8e-09 66.2 102 43.1
Potri.010G200200 Populus trichocarpa HOM05D003384 ORTHO05D005024 1.8e-09 66.2 79 48.1
Prupe.8G024000 Prunus persica HOM05D003384 ORTHO05D005024 1.8e-09 66.2 79 46.8
Solyc01g107270.4 Solanum lycopersicum HOM05D003384 ORTHO05D005024 1.8e-09 66.2 79 48.1
Cre08.g364800 Chlamydomonas reinhardtii HOM05D003384 ORTHO05D005024 2.3e-09 65.9 79 45.6
Thhalv10018011m.g Eutrema salsugineum HOM05D003384 ORTHO05D005024 2.3e-09 65.9 79 45.6
Hma1.2p1_0998F.1_g246010 Hydrangea macrophylla HOM05D003384 ORTHO05D005024 2.3e-09 65.9 79 44.3
Lj1C941G12 Lonicera japonica HOM05D003384 ORTHO05D005024 2.3e-09 65.9 78 47.4
Sabra10G0154400 Salix brachista HOM05D003384 ORTHO05D005024 2.3e-09 65.9 79 46.8
TAR629G0479 Trochodendron aralioides HOM05D003384 ORTHO05D005024 2.3e-09 65.9 79 45.6
Cfa014646 Carpinus fangiana HOM05D003384 ORTHO05D005024 3.0e-09 65.5 79 46.8
CiPaw.01G290900 Carya illinoinensis HOM05D003384 ORTHO05D005024 3.0e-09 65.5 79 46.8
Lj8C80T4 Lonicera japonica HOM05D003384 ORTHO05D005024 3.0e-09 65.5 79 45.6
Nitab4.5_0000333g0100 Nicotiana tabacum HOM05D003384 ORTHO05D005024 3.0e-09 65.5 79 46.8
Nitab4.5_0001169g0010 Nicotiana tabacum HOM05D003384 ORTHO05D005024 3.0e-09 65.5 79 46.8
Solyc02g076720.3 Solanum lycopersicum HOM05D003384 ORTHO05D005024 3.0e-09 65.5 79 46.8
Sopen02g021650 Solanum pennellii HOM05D003384 ORTHO05D005024 3.0e-09 65.5 79 46.8
VMungo1309G0201 Vigna mungo HOM05D003384 ORTHO05D005024 3.0e-09 65.5 102 43.1
Cfa001433 Carpinus fangiana HOM05D003384 ORTHO05D005024 4.0e-09 65.1 79 45.6
ClCG07G004540 Citrullus lanatus HOM05D003384 ORTHO05D005024 4.0e-09 65.1 122 39.3
COL.COLO4_27063 Corchorus olitorius HOM05D003384 ORTHO05D005024 4.0e-09 65.1 79 45.6
Haze_17110 Corylus avellana HOM05D003384 ORTHO05D005024 4.0e-09 65.1 79 46.8
Sc09g0005970 Simmondsia chinensis HOM05D003384 ORTHO05D005024 4.0e-09 65.1 79 46.8
ClCG07G004570 Citrullus lanatus HOM05D003384 ORTHO05D005024 5.2e-09 64.7 78 47.4
Lj2g0004466 Lotus japonicus HOM05D003384 ORTHO05D005024 5.2e-09 64.7 79 44.3
Manes.10G027300 Manihot esculenta HOM05D003384 ORTHO05D005024 5.2e-09 64.7 79 45.6
SHI22710 Sapria himalayana HOM05D003384 ORTHO05D005024 5.2e-09 64.7 79 46.8
SGA_v2.0_scaffold2G01034 Striga asiatica HOM05D003384 ORTHO05D005024 5.2e-09 64.7 79 45.6
THA.LOC104816583 Tarenaya hassleriana HOM05D003384 ORTHO05D005024 5.2e-09 64.7 79 45.6
Cc07_g16480 Coffea canephora HOM05D003384 ORTHO05D005024 6.8e-09 64.3 79 45.6
DCAR_011724 Daucus carota HOM05D003384 ORTHO05D005024 6.8e-09 64.3 79 44.3
PGR004G0663 Punica granatum HOM05D003384 ORTHO05D005024 6.8e-09 64.3 79 46.8
PGSC0003DMG400010235 Solanum tuberosum HOM05D003384 ORTHO05D005024 6.8e-09 64.3 79 45.6
vmacro20478 Vaccinium macrocarpon HOM05D003384 ORTHO05D005024 6.8e-09 64.3 79 48.1
CAN.G370.86 Capsicum annuum HOM05D003384 ORTHO05D005024 8.8e-09 63.9 79 45.6
Gohir.A04G076000 Gossypium hirsutum HOM05D003384 ORTHO05D005024 8.8e-09 63.9 79 45.6
Gohir.D04G115100 Gossypium hirsutum HOM05D003384 ORTHO05D005024 8.8e-09 63.9 79 45.6
Gorai.009G419700 Gossypium raimondii HOM05D003384 ORTHO05D005024 8.8e-09 63.9 79 45.6
PSO837G0041 Papaver somniferum HOM05D003384 ORTHO05D005024 8.8e-09 63.9 79 45.6
Rhsim08G0242600 Rhododendron simsii HOM05D003384 ORTHO05D005024 8.8e-09 63.9 79 46.8
Rhsim10G0184100 Rhododendron simsii HOM05D003384 ORTHO05D005024 8.8e-09 63.9 79 46.8
SalBow6G5500 Salvia bowleyana HOM05D003384 ORTHO05D005024 8.8e-09 63.9 79 44.3
PGSC0003DMG400025849 Solanum tuberosum HOM05D003384 ORTHO05D005024 8.8e-09 63.9 79 46.8
TPR.G18022 Trifolium pratense HOM05D003384 ORTHO05D005024 8.8e-09 63.9 79 44.3
TAR633G2052 Trochodendron aralioides HOM05D003384 ORTHO05D005024 8.8e-09 63.9 79 44.3
BcaC08g46858 Brassica carinata HOM05D003384 ORTHO05D005024 1.2e-08 63.5 81 45.7
C06p48450 Brassica napus HOM05D003384 ORTHO05D005024 1.2e-08 63.5 81 45.7
BolC6t39873H Brassica oleracea HOM05D003384 ORTHO05D005024 1.2e-08 63.5 81 45.7
FAN04G2139 Fragaria x ananassa HOM05D003384 ORTHO05D005024 1.2e-08 63.5 79 46.8
FAN08G1276 Fragaria x ananassa HOM05D003384 ORTHO05D005024 1.2e-08 63.5 79 46.8
FAN13G0754 Fragaria x ananassa HOM05D003384 ORTHO05D005024 1.2e-08 63.5 79 46.8
Lj6g0002532 Lotus japonicus HOM05D003384 ORTHO05D005024 1.2e-08 63.5 79 43.0
Prupe.1G542100 Prunus persica HOM05D003384 ORTHO05D005024 1.2e-08 63.5 79 45.6
BraA07t31553Z Brassica rapa HOM05D003384 ORTHO05D005024 1.5e-08 63.2 81 44.4
Carub.0002s2105 Capsella rubella HOM05D003384 ORTHO05D005024 1.5e-08 63.2 80 46.2
Dinv42277 Davidia involucrata HOM05D003384 ORTHO05D005024 1.5e-08 63.2 79 44.3
FvH4_5g19530 Fragaria vesca HOM05D003384 ORTHO05D005024 1.5e-08 63.2 79 46.8
FAN18G2272 Fragaria x ananassa HOM05D003384 ORTHO05D005024 1.5e-08 63.2 79 46.8
FAN18G2911 Fragaria x ananassa HOM05D003384 ORTHO05D005024 1.5e-08 63.2 79 46.8
QL08p061129 Quercus lobata HOM05D003384 ORTHO05D005024 1.5e-08 63.2 79 43.0
GSVIVG01016499001 Vitis vinifera HOM05D003384 ORTHO05D005024 1.5e-08 63.2 79 45.6
Ciclev10030516m.g Citrus clementina HOM05D003384 ORTHO05D005024 2.0e-08 62.8 110 39.1
Cc04_g11240 Coffea canephora HOM05D003384 ORTHO05D005024 2.0e-08 62.8 79 44.3
Eucgr.I00206 Eucalyptus grandis HOM05D003384 ORTHO05D005024 2.0e-08 62.8 79 44.3
Lsat_1_v5_gn_6_96581 Lactuca sativa HOM05D003384 ORTHO05D005024 2.0e-08 62.8 79 45.6
Phvul.001G234500 Phaseolus vulgaris HOM05D003384 ORTHO05D005024 2.0e-08 62.8 79 45.6
RcHm_v2.0_Chr7g0204141 Rosa chinensis HOM05D003384 ORTHO05D005024 2.0e-08 62.8 79 45.6
Hund07041 Selenicereus undatus HOM05D003384 ORTHO05D005024 2.0e-08 62.8 79 46.8
arahy.Tifrunner.gnm1.ann1.Z31J18 Arachis hypogaea HOM05D003384 ORTHO05D005024 2.6e-08 62.4 78 44.9
C06p33470 Brassica napus HOM05D003384 ORTHO05D005024 2.6e-08 62.4 81 45.7
BolC6t38461H Brassica oleracea HOM05D003384 ORTHO05D005024 2.6e-08 62.4 81 45.7
BraA07t30586Z Brassica rapa HOM05D003384 ORTHO05D005024 2.6e-08 62.4 81 45.7
ECA246G5320 Erigeron canadensis HOM05D003384 ORTHO05D005024 3.4e-08 62.0 79 43.0
Potri.008G058600 Populus trichocarpa HOM05D003384 ORTHO05D005024 3.4e-08 62.0 88 44.3
TWI18G1054 Tripterygium wilfordii HOM05D003384 ORTHO05D005024 3.4e-08 62.0 79 44.3
Aqoxy1G00556 Aquilegia oxysepala HOM05D003384 ORTHO05D005024 4.4e-08 61.6 79 45.6
Glyma.11G221100 Glycine max HOM05D003384 ORTHO05D005024 4.4e-08 61.6 79 43.0
Glyma.18G036300 Glycine max HOM05D003384 ORTHO05D005024 4.4e-08 61.6 79 43.0
HanXRQChr05g0161141 Helianthus annuus HOM05D003384 ORTHO05D005024 4.4e-08 61.6 79 43.0
MD03G1203100 Malus domestica HOM05D003384 ORTHO05D005024 4.4e-08 61.6 102 40.2
SMO011G0040 Selaginella moellendorffii HOM05D003384 ORTHO05D018108 4.4e-08 61.6 33 93.9
SMO116G0212 Selaginella moellendorffii HOM05D003384 ORTHO05D018108 4.4e-08 61.6 33 93.9
SMO347G0175 Selaginella moellendorffii HOM05D003384 ORTHO05D018108 4.4e-08 61.6 33 93.9
CARHR067520 Cardamine hirsuta HOM05D003384 ORTHO05D005024 5.7e-08 61.2 80 45.0
PRCOL_00000695 Prasinoderma coloniale HOM05D003384 ORTHO05D005024 5.7e-08 61.2 73 47.9
SalBow6G5425 Salvia bowleyana HOM05D003384 ORTHO05D005024 5.7e-08 61.2 79 43.0
Sp5g29440 Schrenkiella parvula HOM05D003384 ORTHO05D005024 5.7e-08 61.2 80 45.0
Actinidia02926 Actinidia chinensis HOM05D003384 ORTHO05D005024 7.5e-08 60.8 79 45.6
AT1G74260 Arabidopsis thaliana HOM05D003384 ORTHO05D005024 7.5e-08 60.8 80 43.8
A07p29480 Brassica napus HOM05D003384 ORTHO05D005024 7.5e-08 60.8 81 44.4
Lalb_Chr18g0053121 Lupinus albus HOM05D003384 ORTHO05D005024 7.5e-08 60.8 78 43.6
Medtr6g011360 Medicago truncatula HOM05D003384 ORTHO05D005024 7.5e-08 60.8 79 43.0
Medtr8g100045 Medicago truncatula HOM05D003384 ORTHO05D005024 7.5e-08 60.8 79 43.0
Aqoxy5G02953 Aquilegia oxysepala HOM05D003384 ORTHO05D005024 9.8e-08 60.5 78 46.2
MD04G1022300 Malus domestica HOM05D003384 ORTHO05D005024 9.8e-08 60.5 79 44.3
Psat7g023040 Pisum sativum HOM05D003384 ORTHO05D005024 9.8e-08 60.5 79 41.8
EL10Ac2g04005 Beta vulgaris HOM05D003384 ORTHO05D005024 1.3e-07 60.1 79 43.0
CSS0047277 Camellia sinensis var. sinensis HOM05D003384 ORTHO05D005024 1.3e-07 60.1 79 44.3
Lalb_Chr15g0084621 Lupinus albus HOM05D003384 ORTHO05D005024 1.3e-07 60.1 79 40.5
SMO341G0001 Selaginella moellendorffii HOM05D003384 ORTHO05D018108 1.3e-07 60.1 33 90.9
AL2G34140 Arabidopsis lyrata HOM05D003384 ORTHO05D005024 1.7e-07 59.7 79 44.3
Ca_17447_v3 Cicer arietinum L. HOM05D003384 ORTHO05D005024 1.7e-07 59.7 79 41.8
Ca_30022_v3 Cicer arietinum L. HOM05D003384 ORTHO05D005024 1.7e-07 59.7 79 41.8
VMungo1383G2986 Vigna mungo HOM05D003384 ORTHO05D005024 1.7e-07 59.7 79 43.0
A07p40090 Brassica napus HOM05D003384 ORTHO05D005024 3.7e-07 58.5 79 45.6
CSS0027778 Camellia sinensis var. sinensis HOM05D003384 ORTHO05D005024 3.7e-07 58.5 79 43.0
Aa31LG7G13860 Aethionema arabicum HOM05D003384 ORTHO05D005024 4.8e-07 58.2 79 41.8
TPR.G25489 Trifolium pratense HOM05D003384 ORTHO05D005024 4.8e-07 58.2 79 41.8
BcaC08g45597 Brassica carinata HOM05D003384 ORTHO05D005024 1.1e-06 57.0 67 47.8
SMO032G0004 Selaginella moellendorffii HOM05D003320 ORTHO05D003941 1.1e-06 57.0 66 53.0
Ah.03g145450 Amaranthus hybridus HOM05D003384 ORTHO05D005024 1.4e-06 56.6 79 41.8
AUR62002272 Chenopodium quinoa HOM05D003384 ORTHO05D005024 2.4e-06 55.8 79 43.0
AUR62009267 Chenopodium quinoa HOM05D003384 ORTHO05D005024 4.1e-06 55.1 96 40.6
AUR62042439 Chenopodium quinoa HOM05D003384 ORTHO05D005024 5.4e-06 54.7 79 41.8


User provided reference genes

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