Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO361G0618 Selaginella moellendorffii HOM05D003979 ORTHO05D015566 6.6e-190 667.2 326 100.0
SMO361G0245 Selaginella moellendorffii HOM05D003979 ORTHO05D005530 1.7e-44 184.1 212 55.2
SMO361G0501 Selaginella moellendorffii HOM05D000327 ORTHO05D000218 1.8e-33 147.5 85 89.4
CBR_g16971 Chara braunii HOM05D003979 ORTHO05D005530 9.1e-30 135.2 225 39.6
Mapoly0044s0128 Marchantia polymorpha HOM05D003979 ORTHO05D005530 1.1e-27 128.3 212 40.1
SEGI_04002 Sequoiadendron giganteum HOM05D003979 ORTHO05D005530 1.9e-27 127.5 212 38.2
Pp3c11_18700 Physcomitrium patens HOM05D003979 ORTHO05D005530 7.2e-27 125.6 212 39.6
VMungo0540G1831 Vigna mungo HOM05D003979 ORTHO05D005530 2.7e-26 123.6 212 37.7
Phvul.006G152700 Phaseolus vulgaris HOM05D003979 ORTHO05D005530 3.6e-26 123.2 212 38.2
PRCOL_00005867 Prasinoderma coloniale HOM05D003979 ORTHO05D005530 3.6e-26 123.2 200 39.0
arahy.Tifrunner.gnm1.ann1.NX1XST Arachis hypogaea HOM05D003979 ORTHO05D005530 1.4e-25 121.3 200 38.5
ATR0787G169 Amborella trichopoda HOM05D003979 ORTHO05D005530 6.7e-25 119.0 212 38.2
PSO017G0981 Papaver somniferum HOM05D003979 ORTHO05D005530 6.7e-25 119.0 212 37.3
Manes.15G050825 Manihot esculenta HOM05D003979 ORTHO05D005530 1.1e-24 118.2 212 37.3
Haze_11573 Corylus avellana HOM05D003979 ORTHO05D005530 1.5e-24 117.9 216 36.6
MCO11G076 Micromonas commoda HOM05D003979 ORTHO05D005530 2.0e-24 117.5 208 37.5
PSO063G3024 Papaver somniferum HOM05D003979 ORTHO05D005530 2.0e-24 117.5 212 37.3
Potri.003G176600 Populus trichocarpa HOM05D003979 ORTHO05D005530 2.0e-24 117.5 212 36.8
Cfa014896 Carpinus fangiana HOM05D003979 ORTHO05D005530 2.6e-24 117.1 212 37.3
Medtr2g089340 Medicago truncatula HOM05D003979 ORTHO05D005530 2.6e-24 117.1 212 36.8
arahy.Tifrunner.gnm1.ann1.ZGF32Z Arachis hypogaea HOM05D003979 ORTHO05D005530 3.3e-24 116.7 212 36.3
CiPaw.02G067900 Carya illinoinensis HOM05D003979 ORTHO05D005530 3.3e-24 116.7 212 36.8
Lalb_Chr18g0056121 Lupinus albus HOM05D003979 ORTHO05D005530 5.7e-24 115.9 212 35.8
Nn1g03146 Nelumbo nucifera HOM05D003979 ORTHO05D005530 7.4e-24 115.5 212 37.3
Lj6g0025731 Lotus japonicus HOM05D003979 ORTHO05D005530 9.7e-24 115.2 212 35.8
Actinidia35951 Actinidia chinensis HOM05D003979 ORTHO05D005530 1.3e-23 114.8 212 36.3
Glyma.13G207900 Glycine max HOM05D003979 ORTHO05D005530 1.7e-23 114.4 212 35.8
Potri.001G051700 Populus trichocarpa HOM05D003979 ORTHO05D005530 1.7e-23 114.4 212 36.3
TAR365G0531 Trochodendron aralioides HOM05D003979 ORTHO05D005530 1.7e-23 114.4 212 35.8
Thecc.04G210300 Theobroma cacao HOM05D003979 ORTHO05D005530 2.2e-23 114.0 215 35.8
HanXRQChr14g0435331 Helianthus annuus HOM05D003979 ORTHO05D005530 2.8e-23 113.6 212 36.8
Sc25g0005860 Simmondsia chinensis HOM05D003979 ORTHO05D005530 3.7e-23 113.2 212 36.8
Os08g0559600 Oryza sativa ssp. japonica HOM05D003979 ORTHO05D005530 4.8e-23 112.8 212 37.3
Cre03.g206600 Chlamydomonas reinhardtii HOM05D003979 ORTHO05D005530 6.3e-23 112.5 207 35.7
Ca_00636_v3 Cicer arietinum L. HOM05D003979 ORTHO05D005530 6.3e-23 112.5 212 35.4
Ca_29705_v3 Cicer arietinum L. HOM05D003979 ORTHO05D005530 6.3e-23 112.5 212 35.4
Oeu022336.1 Olea europaea HOM05D003979 ORTHO05D005530 6.3e-23 112.5 218 35.8
Zm00001eb175970 Zea mays HOM05D003979 ORTHO05D005530 6.3e-23 112.5 215 35.8
HanXRQChr02g0059571 Helianthus annuus HOM05D003979 ORTHO05D005530 1.1e-22 111.7 212 36.8
FvH4_7g04190 Fragaria vesca HOM05D003979 ORTHO05D005530 1.4e-22 111.3 212 35.4
FAN06G4745 Fragaria x ananassa HOM05D003979 ORTHO05D005530 1.4e-22 111.3 212 35.4
Sabra01G0036200 Salix brachista HOM05D003979 ORTHO05D005530 1.4e-22 111.3 212 35.8
AUR62015873 Chenopodium quinoa HOM05D003979 ORTHO05D005530 2.4e-22 110.5 212 35.8
Hma1.2p1_0691F.1_g204250 Hydrangea macrophylla HOM05D003979 ORTHO05D005530 2.4e-22 110.5 212 35.8
RcHm_v2.0_Chr1g0328531 Rosa chinensis HOM05D003979 ORTHO05D005530 2.4e-22 110.5 212 34.9
Zm00001eb039310 Zea mays HOM05D003979 ORTHO05D005530 2.4e-22 110.5 212 36.3
AUR62020350 Chenopodium quinoa HOM05D003979 ORTHO05D005530 3.1e-22 110.2 212 35.4
ECA233G3228 Erigeron canadensis HOM05D003979 ORTHO05D005530 3.1e-22 110.2 212 36.3
Hund24848 Selenicereus undatus HOM05D003979 ORTHO05D005530 3.1e-22 110.2 212 35.8
FAN01G2046 Fragaria x ananassa HOM05D003979 ORTHO05D005530 4.1e-22 109.8 211 35.1
FAN10G0585 Fragaria x ananassa HOM05D003979 ORTHO05D005530 4.1e-22 109.8 211 35.1
PGSC0003DMG400019163 Solanum tuberosum HOM05D003979 ORTHO05D005530 4.1e-22 109.8 212 35.4
HPP92_025762 Vanilla planifolia HOM05D003979 ORTHO05D005530 4.1e-22 109.8 212 34.9
Ciclev10004565m.g Citrus clementina HOM05D003979 ORTHO05D005530 5.3e-22 109.4 212 34.9
Gohir.A10G121600 Gossypium hirsutum HOM05D003979 ORTHO05D005530 5.3e-22 109.4 212 35.8
Cc02_g25590 Coffea canephora HOM05D003979 ORTHO05D005530 9.1e-22 108.6 212 36.3
CsaV3_3G011200 Cucumis sativus L. HOM05D003979 ORTHO05D005530 9.1e-22 108.6 212 34.9
Psat1g182280 Pisum sativum HOM05D003979 ORTHO05D005530 9.1e-22 108.6 212 34.0
MSTRG.24631 Avicennia marina HOM05D003979 ORTHO05D005530 1.2e-21 108.2 212 34.9
Dinv38268 Davidia involucrata HOM05D003979 ORTHO05D005530 1.6e-21 107.8 212 34.9
Solyc05g053540.3 Solanum lycopersicum HOM05D003979 ORTHO05D005530 1.6e-21 107.8 212 34.9
Solyc12g043020.2 Solanum lycopersicum HOM05D003979 ORTHO05D005530 1.6e-21 107.8 212 35.4
Sopen05g032060 Solanum pennellii HOM05D003979 ORTHO05D005530 1.6e-21 107.8 212 34.9
Cc03_g07310 Coffea canephora HOM05D003979 ORTHO05D005530 2.0e-21 107.5 212 36.3
Migut.N00344 Erythranthe guttata HOM05D003979 ORTHO05D005530 2.0e-21 107.5 212 35.4
Manes.03G150102 Manihot esculenta HOM05D003979 ORTHO05D005530 2.0e-21 107.5 162 40.7
CDE04G1626 Ceratophyllum demersum HOM05D003979 ORTHO05D005530 2.6e-21 107.1 212 35.4
QL07p012465 Quercus lobata HOM05D003979 ORTHO05D005530 3.5e-21 106.7 212 34.0
COL.COLO4_20310 Corchorus olitorius HOM05D003979 ORTHO05D005530 4.5e-21 106.3 212 34.9
Sed0009934 Sechium edule HOM05D003979 ORTHO05D005530 4.5e-21 106.3 212 34.9
Sopen12g022260 Solanum pennellii HOM05D003979 ORTHO05D005530 4.5e-21 106.3 212 34.9
Actinidia34623 Actinidia chinensis HOM05D003979 ORTHO05D005530 5.9e-21 105.9 212 34.9
CiPaw.01G125500 Carya illinoinensis HOM05D003979 ORTHO05D005530 5.9e-21 105.9 212 34.4
ClCG05G003530 Citrullus lanatus HOM05D003979 ORTHO05D005530 5.9e-21 105.9 212 33.5
Duzib268G0146 Durio zibethinus HOM05D003979 ORTHO05D005530 5.9e-21 105.9 212 34.9
Lsat_1_v5_gn_6_63381 Lactuca sativa HOM05D003979 ORTHO05D005530 5.9e-21 105.9 212 35.4
Peaxi162Scf00536g00915 Petunia axillaris HOM05D003979 ORTHO05D005530 5.9e-21 105.9 192 35.4
HPP92_025735 Vanilla planifolia HOM05D003979 ORTHO05D005530 5.9e-21 105.9 215 34.0
AUR62017196 Chenopodium quinoa HOM05D003979 ORTHO05D005530 7.7e-21 105.5 212 34.4
Duzib212G0229 Durio zibethinus HOM05D003979 ORTHO05D005530 7.7e-21 105.5 212 34.9
Peaxi162Scf00073g02029 Petunia axillaris HOM05D003979 ORTHO05D005530 7.7e-21 105.5 207 35.3
GSVIVG01029073001 Vitis vinifera HOM05D003979 ORTHO05D005530 7.7e-21 105.5 212 33.5
CSS0040719 Camellia sinensis var. sinensis HOM05D003979 ORTHO05D005530 1.0e-20 105.1 212 35.4
CARHR100330 Cardamine hirsuta HOM05D003979 ORTHO05D005530 1.0e-20 105.1 212 35.4
DCAR_031519 Daucus carota HOM05D003979 ORTHO05D005530 1.0e-20 105.1 212 34.4
PGR031G0232 Punica granatum HOM05D003979 ORTHO05D005530 1.0e-20 105.1 212 34.0
MELO3C006331.2 Cucumis melo HOM05D003979 ORTHO05D005530 1.3e-20 104.8 212 34.0
TWI09G0393 Tripterygium wilfordii HOM05D003979 ORTHO05D005530 1.3e-20 104.8 212 32.5
CANSAT78G1204 Cannabis sativa HOM05D003979 ORTHO05D005530 1.7e-20 104.4 212 34.9
Duzib151G0303 Durio zibethinus HOM05D003979 ORTHO05D005530 1.7e-20 104.4 212 34.0
AUR62010687 Chenopodium quinoa HOM05D003979 ORTHO05D005530 2.2e-20 104.0 212 34.0
vmacro00507 Vaccinium macrocarpon HOM05D003979 ORTHO05D005530 3.8e-20 103.2 220 33.2
Ah.04g166150 Amaranthus hybridus HOM05D003979 ORTHO05D005530 5.0e-20 102.8 204 33.8
EL10Ac4g07703 Beta vulgaris HOM05D003979 ORTHO05D005530 5.0e-20 102.8 245 31.8
CSS0027237 Camellia sinensis var. sinensis HOM05D003979 ORTHO05D005530 5.0e-20 102.8 212 34.9
THA.LOC104808724 Tarenaya hassleriana HOM05D003979 ORTHO05D005530 6.5e-20 102.4 212 34.0
CAN.G765.2 Capsicum annuum HOM05D003979 ORTHO05D005530 8.5e-20 102.1 220 33.6
Gohir.D02G031700 Gossypium hirsutum HOM05D003979 ORTHO05D005530 8.5e-20 102.1 212 34.4
Prupe.1G003100 Prunus persica HOM05D003979 ORTHO05D005530 8.5e-20 102.1 212 34.4
AT3G23940 Arabidopsis thaliana HOM05D003979 ORTHO05D005530 1.9e-19 100.9 212 34.0
THA.LOC104804817 Tarenaya hassleriana HOM05D003979 ORTHO05D005530 1.9e-19 100.9 212 34.0
Gorai.005G035200 Gossypium raimondii HOM05D003979 ORTHO05D005530 2.5e-19 100.5 212 34.0
Carub.0003s2458 Capsella rubella HOM05D003979 ORTHO05D005530 3.2e-19 100.1 212 33.5
Aqoxy5G02610 Aquilegia oxysepala HOM05D003979 ORTHO05D005530 4.2e-19 99.8 212 34.4
Thhalv10002451m.g Eutrema salsugineum HOM05D003979 ORTHO05D005530 4.2e-19 99.8 212 34.4
Gohir.A02G024400 Gossypium hirsutum HOM05D003979 ORTHO05D005530 4.2e-19 99.8 212 34.0
AL3G39610 Arabidopsis lyrata HOM05D003979 ORTHO05D005530 7.2e-19 99.0 212 33.5
TAR624G0299 Trochodendron aralioides HOM05D003979 ORTHO05D005530 7.2e-19 99.0 204 31.9
Aqoxy2G03779 Aquilegia oxysepala HOM05D003979 ORTHO05D005530 9.4e-19 98.6 212 33.0
Gorai.011G161400 Gossypium raimondii HOM05D003979 ORTHO05D005530 4.7e-18 96.3 212 34.4
BcaC06g35668 Brassica carinata HOM05D003979 ORTHO05D005530 6.1e-18 95.9 212 34.0
C07p12270 Brassica napus HOM05D003979 ORTHO05D005530 6.1e-18 95.9 212 34.0
RhsimUnG0135800 Rhododendron simsii HOM05D003979 ORTHO05D005530 6.1e-18 95.9 245 31.0
RhsimUnG0180900 Rhododendron simsii HOM05D003979 ORTHO05D005530 6.1e-18 95.9 245 31.0
Hund11465 Selenicereus undatus HOM05D003979 ORTHO05D005530 6.1e-18 95.9 196 32.1
BcaB06g26604 Brassica carinata HOM05D003979 ORTHO05D005530 2.3e-17 94.0 212 33.5
A07p08130 Brassica napus HOM05D003979 ORTHO05D005530 2.3e-17 94.0 212 33.5
BraA07t28596Z Brassica rapa HOM05D003979 ORTHO05D005530 2.3e-17 94.0 212 33.5
Aa31LG8G10930 Aethionema arabicum HOM05D003979 ORTHO05D005530 3.0e-17 93.6 212 32.5
BraA01t03222Z Brassica rapa HOM05D003979 ORTHO05D005530 3.0e-17 93.6 212 33.5
MBI07_g21060_MAGBIO Magnolia biondii HOM05D003979 ORTHO05D005530 3.0e-17 93.6 196 34.2
MD04G1003600 Malus domestica HOM05D003979 ORTHO05D005530 3.0e-17 93.6 212 32.1
Sp3g22010 Schrenkiella parvula HOM05D003979 ORTHO05D005530 4.0e-17 93.2 212 33.0
BcaB04g20393 Brassica carinata HOM05D003979 ORTHO05D005530 6.7e-17 92.4 212 33.0
A01p30940 Brassica napus HOM05D003979 ORTHO05D005530 6.7e-17 92.4 212 33.0
C01p39410 Brassica napus HOM05D003979 ORTHO05D005530 6.7e-17 92.4 212 33.0
BolC1t03890H Brassica oleracea HOM05D003979 ORTHO05D005530 6.7e-17 92.4 212 33.0
SGA_v2.0_scaffold31G12595 Striga asiatica HOM05D003979 ORTHO05D005530 6.7e-17 92.4 214 30.8
BolC7t41694H Brassica oleracea HOM05D003979 ORTHO05D005530 1.5e-16 91.3 226 31.9
Cfa024863 Carpinus fangiana HOM05D003979 ORTHO05D005530 1.3e-15 88.2 219 31.1
Cpa.g.sc59.101 Carica papaya HOM05D003979 ORTHO05D005530 1.1e-14 85.1 196 30.6
Nitab4.5_0001769g0010 Nicotiana tabacum HOM05D003979 ORTHO05D005530 7.0e-14 82.4 223 28.7
AagrBONN_evm.TU.Sc2ySwM_228.3337 Anthoceros agrestis HOM05D003979 ORTHO05D005530 2.0e-13 80.9 93 49.5
SMO361G0819 Selaginella moellendorffii HOM05D003979 ORTHO05D005530 1.7e-12 77.8 71 59.2
unitig_899.g15534 Utricularia gibba HOM05D003979 ORTHO05D005530 2.9e-12 77.0 68 60.3
QL06p023475 Quercus lobata HOM05D003979 ORTHO05D005530 6.5e-12 75.9 72 52.8
Nitab4.5_0001066g0080 Nicotiana tabacum HOM05D003979 ORTHO05D005530 8.5e-12 75.5 87 50.6
HPP92_025731 Vanilla planifolia HOM05D003979 ORTHO05D005530 1.9e-11 74.3 206 28.2
QL07p030448 Quercus lobata HOM05D003979 ORTHO05D000106 4.2e-11 73.2 72 51.4
QL06p023466 Quercus lobata HOM05D003979 ORTHO05D015566 7.2e-11 72.4 68 54.4
Cfa020039 Carpinus fangiana HOM05D003979 ORTHO05D015566 9.4e-11 72.0 68 55.9
TPR.G30672 Trifolium pratense HOM05D003979 ORTHO05D005530 1.6e-10 71.2 89 42.7
Atru.chr4.1774 Acer truncatum HOM05D003979 ORTHO05D005530 8.0e-10 68.9 68 51.5
CAN.G12.20 Capsicum annuum HOM05D003979 ORTHO05D015566 1.0e-09 68.6 73 50.7
Eucgr.H02825 Eucalyptus grandis HOM05D003979 ORTHO05D015566 1.0e-09 68.6 68 52.9
PGSC0003DMG400028636 Solanum tuberosum HOM05D003979 ORTHO05D015566 1.8e-09 67.8 68 52.9
Gohir.D10G144500 Gossypium hirsutum HOM05D003979 ORTHO05D005530 2.3e-09 67.4 82 45.1
Duzib268G0265 Durio zibethinus HOM05D003979 ORTHO05D015566 4.0e-09 66.6 68 50.0
Cfa023757 Carpinus fangiana HOM05D003979 ORTHO05D005530 1.5e-08 64.7 230 24.3
Pp3c16_13540 Physcomitrium patens HOM05D000327 ORTHO05D000218 7.5e-08 62.4 84 34.5
Eucgr.C02488 Eucalyptus grandis HOM05D003979 ORTHO05D005530 9.8e-08 62.0 171 29.8
Eucgr.C02482 Eucalyptus grandis HOM05D003979 ORTHO05D015566 2.2e-07 60.8 68 50.0
SMO141G0141 Selaginella moellendorffii HOM05D000327 ORTHO05D000218 2.8e-07 60.5 84 36.9
Cfa011368 Carpinus fangiana HOM05D000327 ORTHO05D000218 8.3e-07 58.9 83 37.3
COL.COLO4_25250 Corchorus olitorius HOM05D000327 ORTHO05D000218 1.4e-06 58.2 86 38.4
Haze_23926 Corylus avellana HOM05D000327 ORTHO05D000218 1.4e-06 58.2 83 36.1
Pp3c5_8660 Physcomitrium patens HOM05D000327 ORTHO05D000218 1.4e-06 58.2 81 33.3
SMO147G0125 Selaginella moellendorffii HOM05D000327 ORTHO05D000218 3.1e-06 57.0 83 34.9
SMO147G0272 Selaginella moellendorffii HOM05D000327 ORTHO05D000218 3.1e-06 57.0 83 34.9


User provided reference genes

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