Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO361G0598 Selaginella moellendorffii HOM05D000319 ORTHO05D005616 1.6e-146 522.7 255 100.0
TWI18G1113 Tripterygium wilfordii HOM05D000319 ORTHO05D005616 1.8e-113 412.9 235 81.3
Duzib211G0655 Durio zibethinus HOM05D000319 ORTHO05D005616 2.2e-111 406.0 239 79.5
COL.COLO4_06081 Corchorus olitorius HOM05D000319 ORTHO05D005616 2.8e-111 405.6 239 79.1
Prupe.3G092100 Prunus persica HOM05D000319 ORTHO05D005616 3.7e-111 405.2 230 82.6
TWI75G0800 Tripterygium wilfordii HOM05D000319 ORTHO05D005616 1.1e-110 403.7 235 79.6
AagrBONN_evm.TU.Sc2ySwM_368.222 Anthoceros agrestis HOM05D000319 ORTHO05D005616 1.4e-110 403.3 231 80.1
Nn1g02549 Nelumbo nucifera HOM05D000319 ORTHO05D005616 1.4e-110 403.3 235 80.0
Duzib138G1611 Durio zibethinus HOM05D000319 ORTHO05D005616 1.8e-110 402.9 239 79.1
ClCG07G012250 Citrullus lanatus HOM05D000319 ORTHO05D005616 2.4e-110 402.5 242 78.1
RcHm_v2.0_Chr2g0134501 Rosa chinensis HOM05D000319 ORTHO05D005616 3.1e-110 402.1 255 76.5
Dinv34565 Davidia involucrata HOM05D000319 ORTHO05D005616 4.1e-110 401.7 239 79.5
TPR.G37240 Trifolium pratense HOM05D000319 ORTHO05D005616 5.3e-110 401.4 242 78.9
Thecc.01G267900 Theobroma cacao HOM05D000319 ORTHO05D005616 6.9e-110 401.0 239 78.7
Lj3g0018932 Lotus japonicus HOM05D000319 ORTHO05D005616 9.1e-110 400.6 229 81.7
Sc17g0001020 Simmondsia chinensis HOM05D000319 ORTHO05D005616 9.1e-110 400.6 252 77.8
arahy.Tifrunner.gnm1.ann1.69SMRU Arachis hypogaea HOM05D000319 ORTHO05D005616 1.5e-109 399.8 242 78.5
HanXRQChr15g0467021 Helianthus annuus HOM05D000319 ORTHO05D005616 2.0e-109 399.4 235 79.6
CANSAT56G1819 Cannabis sativa HOM05D000319 ORTHO05D005616 3.4e-109 398.7 242 78.5
MELO3C017843.2 Cucumis melo HOM05D000319 ORTHO05D005616 4.5e-109 398.3 230 79.6
MD17G1215900 Malus domestica HOM05D000319 ORTHO05D005616 5.9e-109 397.9 253 74.7
Potri.002G045200 Populus trichocarpa HOM05D000319 ORTHO05D005616 5.9e-109 397.9 230 80.0
MSTRG.18283 Avicennia marina HOM05D000319 ORTHO05D005616 1.0e-108 397.1 239 79.5
CDE06G1797 Ceratophyllum demersum HOM05D000319 ORTHO05D005616 1.0e-108 397.1 253 74.7
Manes.14G005900 Manihot esculenta HOM05D000319 ORTHO05D005616 1.0e-108 397.1 248 76.2
Ciclev10021811m.g Citrus clementina HOM05D000319 ORTHO05D005616 1.3e-108 396.7 239 77.0
MD17G1216000 Malus domestica HOM05D000319 ORTHO05D005616 1.7e-108 396.4 229 80.3
Sed0023498 Sechium edule HOM05D000319 ORTHO05D005616 1.7e-108 396.4 242 76.9
Cfa008743 Carpinus fangiana HOM05D000319 ORTHO05D005616 2.2e-108 396.0 230 80.0
Haze_11759 Corylus avellana HOM05D000319 ORTHO05D005616 2.2e-108 396.0 239 77.8
Potri.005G218000 Populus trichocarpa HOM05D000319 ORTHO05D005616 2.2e-108 396.0 230 80.0
CiPaw.05G169400 Carya illinoinensis HOM05D000319 ORTHO05D005616 2.9e-108 395.6 230 81.3
CsaV3_4G001900 Cucumis sativus L. HOM05D000319 ORTHO05D005616 2.9e-108 395.6 230 79.1
Manes.01G201800 Manihot esculenta HOM05D000319 ORTHO05D005616 2.9e-108 395.6 248 75.8
PGR044G1796 Punica granatum HOM05D000319 ORTHO05D005616 2.9e-108 395.6 230 80.0
GSVIVG01000718001 Vitis vinifera HOM05D000319 ORTHO05D005616 2.9e-108 395.6 235 77.9
Lsat_1_v5_gn_9_8201 Lactuca sativa HOM05D000319 ORTHO05D005616 3.8e-108 395.2 239 77.0
THA.LOC104801256 Tarenaya hassleriana HOM05D000319 ORTHO05D005616 3.8e-108 395.2 230 80.0
Gorai.001G242600 Gossypium raimondii HOM05D000319 ORTHO05D005616 5.0e-108 394.8 229 80.3
CSS0020063 Camellia sinensis var. sinensis HOM05D000319 ORTHO05D005616 6.5e-108 394.4 239 78.2
Gohir.A07G208700 Gossypium hirsutum HOM05D000319 ORTHO05D005616 6.5e-108 394.4 229 80.3
Gohir.D08G055800 Gossypium hirsutum HOM05D000319 ORTHO05D005616 6.5e-108 394.4 239 77.0
ECA247G3951 Erigeron canadensis HOM05D000319 ORTHO05D005616 8.5e-108 394.0 232 78.9
Gohir.A08G045400 Gossypium hirsutum HOM05D000319 ORTHO05D005616 8.5e-108 394.0 239 77.0
THA.LOC104825981 Tarenaya hassleriana HOM05D000319 ORTHO05D005616 8.5e-108 394.0 230 80.0
Actinidia19981 Actinidia chinensis HOM05D000319 ORTHO05D005616 1.1e-107 393.7 230 80.0
Ah.11g049990 Amaranthus hybridus HOM05D000319 ORTHO05D005616 1.1e-107 393.7 230 80.0
Ca_01047_v3 Cicer arietinum L. HOM05D000319 ORTHO05D005616 1.1e-107 393.7 230 79.1
Gorai.004G056700 Gossypium raimondii HOM05D000319 ORTHO05D005616 1.1e-107 393.7 239 76.6
CiPaw.06G060900 Carya illinoinensis HOM05D000319 ORTHO05D005616 1.4e-107 393.3 239 77.8
CDE07G0560 Ceratophyllum demersum HOM05D000319 ORTHO05D005616 1.4e-107 393.3 250 74.4
Phvul.005G179400 Phaseolus vulgaris HOM05D000319 ORTHO05D005616 1.4e-107 393.3 230 79.1
ATR0665G648 Amborella trichopoda HOM05D000319 ORTHO05D005616 1.9e-107 392.9 230 79.6
EL10Ac5g10471 Beta vulgaris HOM05D000319 ORTHO05D005616 2.5e-107 392.5 237 77.2
Medtr2g104110 Medicago truncatula HOM05D000319 ORTHO05D005616 2.5e-107 392.5 230 79.6
Glyma.13G367000 Glycine max HOM05D000319 ORTHO05D005616 3.2e-107 392.1 230 78.7
Hma1.2p1_0760F.1_g214240 Hydrangea macrophylla HOM05D000319 ORTHO05D005616 3.2e-107 392.1 232 78.4
Nn3g19503 Nelumbo nucifera HOM05D000319 ORTHO05D005616 3.2e-107 392.1 227 80.6
Hund09567 Selenicereus undatus HOM05D000319 ORTHO05D005616 3.2e-107 392.1 239 76.6
Atru.chr5.1559 Acer truncatum HOM05D000319 ORTHO05D005616 4.2e-107 391.7 229 80.3
Cpa.g.sc52.96 Carica papaya HOM05D000319 ORTHO05D005616 4.2e-107 391.7 230 79.6
Glyma.15G006400 Glycine max HOM05D000319 ORTHO05D005616 4.2e-107 391.7 230 78.7
Mapoly0103s0061 Marchantia polymorpha HOM05D000319 ORTHO05D005616 4.2e-107 391.7 243 75.3
Migut.D00371 Erythranthe guttata HOM05D000319 ORTHO05D005616 9.4e-107 390.6 248 75.4
Actinidia09093 Actinidia chinensis HOM05D000319 ORTHO05D005616 1.2e-106 390.2 252 75.0
FvH4_6g29310 Fragaria vesca HOM05D000319 ORTHO05D005616 1.2e-106 390.2 255 74.5
Rhsim13G0030900 Rhododendron simsii HOM05D000319 ORTHO05D005616 1.2e-106 390.2 239 77.0
SalBow4G3161 Salvia bowleyana HOM05D000319 ORTHO05D005616 1.2e-106 390.2 230 79.6
Cc01_g18870 Coffea canephora HOM05D000319 ORTHO05D005616 1.6e-106 389.8 245 76.3
Eucgr.K03315 Eucalyptus grandis HOM05D000319 ORTHO05D005616 1.6e-106 389.8 230 79.6
Aqoxy5G00356 Aquilegia oxysepala HOM05D000319 ORTHO05D005616 2.7e-106 389.0 235 78.7
SGA_v2.0_scaffold1G00552 Striga asiatica HOM05D000319 ORTHO05D005616 2.7e-106 389.0 230 79.1
Os05g0509200 Oryza sativa ssp. japonica HOM05D000319 ORTHO05D005616 7.9e-106 387.5 230 77.0
Gohir.D07G214600 Gossypium hirsutum HOM05D000319 ORTHO05D005616 1.0e-105 387.1 229 79.0
PSO832G0193 Papaver somniferum HOM05D000319 ORTHO05D005616 1.0e-105 387.1 232 77.6
unitig_26.g10148 Utricularia gibba HOM05D000319 ORTHO05D005616 1.4e-105 386.7 240 77.9
PSO210G0711 Papaver somniferum HOM05D000319 ORTHO05D005616 1.8e-105 386.3 232 77.6
AUR62032260 Chenopodium quinoa HOM05D000319 ORTHO05D005616 3.0e-105 385.6 230 77.4
TAR365G0186 Trochodendron aralioides HOM05D000319 ORTHO05D005616 3.0e-105 385.6 230 79.1
BcaB01g02030 Brassica carinata HOM05D000319 ORTHO05D005616 6.7e-105 384.4 230 77.8
CAN.G1072.4 Capsicum annuum HOM05D000319 ORTHO05D005616 6.7e-105 384.4 230 78.3
Lalb_Chr22g0350801 Lupinus albus HOM05D000319 ORTHO05D005616 6.7e-105 384.4 236 77.1
AL6G50470 Arabidopsis lyrata HOM05D000319 ORTHO05D005616 1.1e-104 383.6 230 77.8
Carub.0006s3456 Capsella rubella HOM05D000319 ORTHO05D005616 1.1e-104 383.6 230 77.8
Sopen09g027620 Solanum pennellii HOM05D000319 ORTHO05D005616 1.1e-104 383.6 230 77.4
BcaB01g02475 Brassica carinata HOM05D000319 ORTHO05D005616 1.5e-104 383.3 230 77.4
DCAR_018446 Daucus carota HOM05D000319 ORTHO05D005616 1.5e-104 383.3 230 77.8
Nitab4.5_0003053g0020 Nicotiana tabacum HOM05D000319 ORTHO05D005616 1.5e-104 383.3 230 78.3
A03p30990 Brassica napus HOM05D000319 ORTHO05D000903 2.6e-104 382.5 240 75.4
A09p02000 Brassica napus HOM05D000319 ORTHO05D000903 2.6e-104 382.5 230 77.4
AUR62011945 Chenopodium quinoa HOM05D000319 ORTHO05D005616 2.6e-104 382.5 230 77.0
FAN14G4091 Fragaria x ananassa HOM05D000319 ORTHO05D005616 2.6e-104 382.5 262 72.5
Lj2A1160T39 Lonicera japonica HOM05D000319 ORTHO05D005616 2.6e-104 382.5 230 77.8
Nitab4.5_0000187g0170 Nicotiana tabacum HOM05D000319 ORTHO05D005616 2.6e-104 382.5 230 77.8
Sp6g02490 Schrenkiella parvula HOM05D000319 ORTHO05D005616 4.4e-104 381.7 230 77.0
PGSC0003DMG400019303 Solanum tuberosum HOM05D000319 ORTHO05D005616 4.4e-104 381.7 230 76.5
BcaC04g23998 Brassica carinata HOM05D000319 ORTHO05D000903 7.4e-104 380.9 230 77.0
C09p02100 Brassica napus HOM05D000319 ORTHO05D000903 7.4e-104 380.9 230 77.0
CARHR250870 Cardamine hirsuta HOM05D000319 ORTHO05D005616 1.3e-103 380.2 249 73.1
Thhalv10028900m.g Eutrema salsugineum HOM05D000319 ORTHO05D005616 2.2e-103 379.4 230 77.0
AT4G02580 Arabidopsis thaliana HOM05D000319 ORTHO05D005616 4.8e-103 378.3 229 77.3
BcaC01g06747 Brassica carinata HOM05D000319 ORTHO05D000903 6.3e-103 377.9 230 76.5
C03p37760 Brassica napus HOM05D000319 ORTHO05D005616 6.3e-103 377.9 230 76.5
BolC3t16066H Brassica oleracea HOM05D000319 ORTHO05D005616 6.3e-103 377.9 230 76.5
BolC9t53140H Brassica oleracea HOM05D000319 ORTHO05D005616 1.1e-102 377.1 230 76.5
Sabra02G0036300 Salix brachista HOM05D000319 ORTHO05D005616 1.4e-102 376.7 281 66.2
BraA09t35850Z Brassica rapa HOM05D000319 ORTHO05D000903 1.8e-102 376.3 230 76.5
Aa31LG5G2210 Aethionema arabicum HOM05D000319 ORTHO05D005616 2.4e-102 375.9 251 72.1
BraA03t12276Z Brassica rapa HOM05D000319 ORTHO05D000903 2.4e-102 375.9 229 76.9
Zm00001eb292370 Zea mays HOM05D000319 ORTHO05D005616 2.4e-102 375.9 229 75.5
CBR_g10938 Chara braunii HOM05D000319 ORTHO05D005616 1.2e-101 373.6 230 75.2
CBR_g36360 Chara braunii HOM05D000319 ORTHO05D005616 2.0e-101 372.9 230 74.8
Pp3c14_11220 Physcomitrium patens HOM05D000319 ORTHO05D005616 6.5e-100 367.9 227 75.3
VMungo1080G0987 Vigna mungo HOM05D000319 ORTHO05D005616 6.5e-100 367.9 217 79.7
vmacro02626 Vaccinium macrocarpon HOM05D000319 ORTHO05D005616 8.5e-100 367.5 279 65.6
Psat5g303080 Pisum sativum HOM05D000319 ORTHO05D005616 1.5e-99 366.7 242 72.3
Sed0021269 Sechium edule HOM05D000319 ORTHO05D005616 1.9e-99 366.3 242 72.3
SEGI_22234 Sequoiadendron giganteum HOM05D000319 ORTHO05D005616 4.2e-99 365.2 197 85.8
Pp3c2_9810 Physcomitrium patens HOM05D000319 ORTHO05D005616 5.5e-99 364.8 230 73.9
Pp3c2_9813 Physcomitrium patens HOM05D000319 ORTHO05D005616 5.5e-99 364.8 230 73.9
FAN09G4049 Fragaria x ananassa HOM05D000319 ORTHO05D005616 9.4e-99 364.0 242 74.0
HPP92_010274 Vanilla planifolia HOM05D000319 ORTHO05D005616 7.0e-94 347.8 253 68.4
SGA_v2.0_scaffold138G35283 Striga asiatica HOM05D000319 ORTHO05D005616 1.1e-91 340.5 290 62.4
Dinv22483 Davidia involucrata HOM05D000319 ORTHO05D005616 2.7e-90 335.9 197 79.2
HPP92_010249 Vanilla planifolia HOM05D000319 ORTHO05D005616 4.7e-90 335.1 253 68.4
arahy.Tifrunner.gnm1.ann1.0F4L5T Arachis hypogaea HOM05D000319 ORTHO05D005616 6.1e-90 334.7 242 69.8
MBI11_g38515_MAGBIO Magnolia biondii HOM05D000319 ORTHO05D005616 6.1e-90 334.7 234 70.9
HanXRQChr01g0006871 Helianthus annuus HOM05D000319 ORTHO05D005616 3.0e-89 332.4 252 67.5
PRCOL_00000415 Prasinoderma coloniale HOM05D000319 ORTHO05D005616 1.7e-84 316.6 246 63.4
Duzib133G0192 Durio zibethinus HOM05D000319 ORTHO05D005616 2.7e-82 309.3 251 62.2
Sabra05G0167100 Salix brachista HOM05D000319 ORTHO05D005616 2.7e-82 309.3 295 55.3
FAN02G2104 Fragaria x ananassa HOM05D000319 ORTHO05D005616 4.4e-80 302.0 242 65.7
QL03p046056 Quercus lobata HOM05D000319 ORTHO05D005616 5.4e-78 295.0 159 84.9
Solyc09g065830.4 Solanum lycopersicum HOM05D000319 ORTHO05D005616 2.9e-76 289.3 162 80.9
Oeu058799.1 Olea europaea HOM05D000319 ORTHO05D005616 3.8e-76 288.9 160 83.8
BolC2t09938H Brassica oleracea HOM05D000319 ORTHO05D005616 1.1e-75 287.3 253 59.3
BcaC03g16149 Brassica carinata HOM05D000319 ORTHO05D005616 5.7e-72 275.0 212 64.6
Cre10.g450400 Chlamydomonas reinhardtii HOM05D000319 ORTHO05D005616 9.8e-72 274.2 250 51.2
HPP92_010181 Vanilla planifolia HOM05D000319 ORTHO05D005616 5.4e-70 268.5 151 83.4
BcaB05g23646 Brassica carinata HOM05D000319 ORTHO05D005616 5.0e-68 261.9 224 62.1
SGA_v2.0_scaffold580G53039 Striga asiatica HOM05D000319 ORTHO05D005616 1.6e-66 256.9 162 75.3
Lalb_Chr24g0395411 Lupinus albus HOM05D000319 ORTHO05D005616 3.2e-62 242.7 148 77.0
C02p39270 Brassica napus HOM05D000319 ORTHO05D021913 1.1e-54 217.6 133 75.2
CAN.G2529.1 Capsicum annuum HOM05D000319 ORTHO05D005616 4.6e-53 212.2 117 84.6
Carub.0006s0058 Capsella rubella HOM05D000319 ORTHO05D005616 5.6e-51 205.3 115 83.5
Cfa025181 Carpinus fangiana HOM05D000319 ORTHO05D005616 1.4e-49 200.7 212 46.7
FAN05G4646 Fragaria x ananassa HOM05D000319 ORTHO05D005616 4.0e-49 199.1 268 45.5
Haze_26296 Corylus avellana HOM05D000319 ORTHO05D005616 1.1e-46 191.0 236 44.1
Lj1A57T50 Lonicera japonica HOM05D000319 ORTHO05D005616 2.7e-45 186.4 119 74.8
Peaxi162Scf00049g02221 Petunia axillaris HOM05D000319 ORTHO05D005616 1.9e-43 180.3 101 84.2
CSS0010087 Camellia sinensis var. sinensis HOM05D000319 ORTHO05D005616 2.0e-40 170.2 109 74.3
Oeu002275.1 Olea europaea HOM05D000319 ORTHO05D005616 4.2e-38 162.5 163 54.0
Gohir.D03G127200 Gossypium hirsutum HOM05D000319 ORTHO05D005616 3.0e-36 156.4 88 79.5
Gorai.007G009700 Gossypium raimondii HOM05D000319 ORTHO05D005616 4.3e-35 152.5 82 82.9
Psat5g267520 Pisum sativum HOM05D000319 ORTHO05D005616 7.3e-35 151.8 83 78.3
Gohir.D08G101900 Gossypium hirsutum HOM05D000319 ORTHO05D005616 2.1e-34 150.2 88 77.3
Gorai.004G109900 Gossypium raimondii HOM05D000319 ORTHO05D005616 4.8e-34 149.1 88 76.1
Lalb_Chr24g0395401 Lupinus albus HOM05D000319 ORTHO05D005616 6.2e-34 148.7 82 76.8
Gorai.011G177500 Gossypium raimondii HOM05D000319 ORTHO05D015684 2.0e-32 143.7 88 73.9
Gohir.D11G034350 Gossypium hirsutum HOM05D000319 ORTHO05D015684 4.4e-32 142.5 74 83.8
Gorai.007G037200 Gossypium raimondii HOM05D000319 ORTHO05D015684 4.9e-31 139.0 81 77.8
Gohir.D02G148240 Gossypium hirsutum HOM05D000319 ORTHO05D015684 8.4e-31 138.3 81 77.8
Gohir.A10G159900 Gossypium hirsutum HOM05D000319 ORTHO05D015684 2.1e-29 133.7 75 78.7
Gohir.A12G213400 Gossypium hirsutum HOM05D000319 ORTHO05D015684 2.1e-29 133.7 75 78.7
Gohir.D05G290500 Gossypium hirsutum HOM05D000319 ORTHO05D015684 2.1e-29 133.7 75 78.7
Gohir.D12G241200 Gossypium hirsutum HOM05D000319 ORTHO05D015684 2.1e-29 133.7 75 78.7
Gorai.008G258400 Gossypium raimondii HOM05D000319 ORTHO05D015684 3.5e-29 132.9 81 74.1
Gohir.A02G064600 Gossypium hirsutum HOM05D000319 ORTHO05D015684 7.9e-29 131.7 75 77.3
Gorai.005G095000 Gossypium raimondii HOM05D000319 ORTHO05D015684 5.1e-28 129.0 75 77.3
Psat2g121280 Pisum sativum HOM05D000319 ORTHO05D005616 1.6e-26 124.0 84 70.2
Gorai.003G111100 Gossypium raimondii HOM05D000319 ORTHO05D015684 2.1e-26 123.6 76 75.0
Gohir.D03G105033 Gossypium hirsutum HOM05D000319 ORTHO05D005616 4.8e-26 122.5 70 78.6
Oeu058801.1 Olea europaea HOM05D000113 ORTHO05D010194 1.7e-23 114.0 70 75.7
QL03p046047 Quercus lobata HOM05D000319 ORTHO05D005616 3.8e-23 112.8 69 76.8
Psat4g011320 Pisum sativum HOM05D000319 ORTHO05D005616 1.6e-21 107.5 82 65.9
Lj1A57T51 Lonicera japonica HOM05D000319 ORTHO05D005616 1.6e-10 70.9 70 54.3
arahy.Tifrunner.gnm1.ann1.52VWXA Arachis hypogaea HOM05D000069 ORTHO05D086405 9.3e-06 55.1 71 47.9


User provided reference genes

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