Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO361G0435 Selaginella moellendorffii HOM05D002425 ORTHO05D002709 2.8e-64 248.4 123 100.0
SMO361G0099 Selaginella moellendorffii HOM05D002425 ORTHO05D002709 5.1e-34 147.9 132 66.7
GSVIVG01012539001 Vitis vinifera HOM05D002425 ORTHO05D002709 1.6e-11 73.2 133 41.4
Cpa.g.sc20.24 Carica papaya HOM05D002425 ORTHO05D002709 3.6e-11 72.0 136 38.2
MBI16_g30313_MAGBIO Magnolia biondii HOM05D002425 ORTHO05D002709 4.7e-11 71.6 129 41.1
Mapoly0137s0002 Marchantia polymorpha HOM05D002425 ORTHO05D002709 4.7e-11 71.6 138 39.1
arahy.Tifrunner.gnm1.ann1.68LHHN Arachis hypogaea HOM05D002425 ORTHO05D002709 7.9e-11 70.9 127 40.9
AagrBONN_evm.TU.Sc2ySwM_344.5571 Anthoceros agrestis HOM05D002425 ORTHO05D002709 1.0e-10 70.5 129 39.5
Glyma.08G067000 Glycine max HOM05D002425 ORTHO05D002709 1.4e-10 70.1 130 38.5
Lj4g0012171 Lotus japonicus HOM05D002425 ORTHO05D002709 1.4e-10 70.1 125 41.6
Sabra16G0176100 Salix brachista HOM05D002425 ORTHO05D002709 1.4e-10 70.1 130 41.5
Sed0004611 Sechium edule HOM05D002425 ORTHO05D002709 1.4e-10 70.1 119 42.0
Nitab4.5_0005861g0010 Nicotiana tabacum HOM05D002425 ORTHO05D002709 2.3e-10 69.3 109 42.2
Potri.001G282900 Populus trichocarpa HOM05D002425 ORTHO05D002709 2.3e-10 69.3 134 41.0
Sabra09G0059800 Salix brachista HOM05D002425 ORTHO05D002709 2.3e-10 69.3 129 42.6
CSS0029614 Camellia sinensis var. sinensis HOM05D002425 ORTHO05D002709 3.0e-10 68.9 133 41.4
Glyma.07G183000 Glycine max HOM05D002425 ORTHO05D002709 3.0e-10 68.9 130 37.7
Hma1.2p1_0908F.1_g235530 Hydrangea macrophylla HOM05D002425 ORTHO05D002709 3.9e-10 68.6 122 43.4
Hma1.2p1_2737F.1_g327682 Hydrangea macrophylla HOM05D002425 ORTHO05D002709 3.9e-10 68.6 122 43.4
Peaxi162Scf00152g00827 Petunia axillaris HOM05D002425 ORTHO05D002709 3.9e-10 68.6 112 39.3
HPP92_019595 Vanilla planifolia HOM05D002425 ORTHO05D002709 3.9e-10 68.6 112 41.1
Duzib248G1145 Durio zibethinus HOM05D002425 ORTHO05D002709 5.1e-10 68.2 132 37.9
CANSAT54G1313 Cannabis sativa HOM05D002425 ORTHO05D002709 6.7e-10 67.8 134 38.1
CDE04G1856 Ceratophyllum demersum HOM05D002425 ORTHO05D002709 6.7e-10 67.8 94 43.6
CDE07G0186 Ceratophyllum demersum HOM05D002425 ORTHO05D002709 6.7e-10 67.8 125 41.6
Nitab4.5_0027918g0010 Nicotiana tabacum HOM05D002425 ORTHO05D002709 6.7e-10 67.8 110 41.8
Potri.009G078100 Populus trichocarpa HOM05D002425 ORTHO05D002709 6.7e-10 67.8 123 42.3
PGR102G2622 Punica granatum HOM05D002425 ORTHO05D002709 6.7e-10 67.8 134 39.6
Solyc10g047650.3 Solanum lycopersicum HOM05D002425 ORTHO05D002709 6.7e-10 67.8 109 41.3
vmacro19606 Vaccinium macrocarpon HOM05D002425 ORTHO05D002709 6.7e-10 67.8 121 42.1
Lj9C347G10 Lonicera japonica HOM05D002425 ORTHO05D002709 8.8e-10 67.4 105 41.0
SMO364G0085 Selaginella moellendorffii HOM05D002425 ORTHO05D002709 8.8e-10 67.4 101 41.6
CiPaw.06G158800 Carya illinoinensis HOM05D002425 ORTHO05D002709 1.5e-09 66.6 134 38.8
Ciclev10002776m.g Citrus clementina HOM05D002425 ORTHO05D002709 1.5e-09 66.6 135 37.0
Sopen10g018060 Solanum pennellii HOM05D002425 ORTHO05D002709 1.5e-09 66.6 109 41.3
CAN.G74.13 Capsicum annuum HOM05D002425 ORTHO05D002709 2.0e-09 66.2 111 38.7
CAN.G74.15 Capsicum annuum HOM05D002425 ORTHO05D002709 2.0e-09 66.2 109 41.3
Cc02_g20770 Coffea canephora HOM05D002425 ORTHO05D002709 2.0e-09 66.2 133 37.6
Dinv13564 Davidia involucrata HOM05D002425 ORTHO05D002709 2.0e-09 66.2 134 38.1
Nitab4.5_0001259g0060 Nicotiana tabacum HOM05D002425 ORTHO05D002709 2.0e-09 66.2 109 41.3
CSS0000895 Camellia sinensis var. sinensis HOM05D002425 ORTHO05D002709 2.6e-09 65.9 133 40.6
AUR62014153 Chenopodium quinoa HOM05D007191 ORTHO05D002709 2.6e-09 65.9 131 39.7
Nn7g36725 Nelumbo nucifera HOM05D002425 ORTHO05D002709 2.6e-09 65.9 127 39.4
Nitab4.5_0001259g0070 Nicotiana tabacum HOM05D002425 ORTHO05D002709 2.6e-09 65.9 109 41.3
Phvul.002G214000 Phaseolus vulgaris HOM05D002425 ORTHO05D002709 2.6e-09 65.9 115 40.0
TWI14G0247 Tripterygium wilfordii HOM05D002425 ORTHO05D002709 2.6e-09 65.9 124 38.7
TWI59G0391 Tripterygium wilfordii HOM05D002425 ORTHO05D002709 2.6e-09 65.9 132 36.4
Os03g0685500 Oryza sativa ssp. japonica HOM05D002425 ORTHO05D002709 3.3e-09 65.5 125 39.2
Psat5g245800 Pisum sativum HOM05D002425 ORTHO05D002709 3.3e-09 65.5 128 38.3
QL11p025715 Quercus lobata HOM05D002425 ORTHO05D002709 3.3e-09 65.5 132 39.4
TWI59G1057 Tripterygium wilfordii HOM05D002425 ORTHO05D002709 3.3e-09 65.5 131 37.4
Dinv24141 Davidia involucrata HOM05D002425 ORTHO05D002709 4.4e-09 65.1 128 39.1
PSO170G0844 Papaver somniferum HOM05D002425 ORTHO05D002709 4.4e-09 65.1 129 38.8
Peaxi162Scf00003g03238 Petunia axillaris HOM05D002425 ORTHO05D002709 4.4e-09 65.1 115 39.1
PGSC0003DMG400029016 Solanum tuberosum HOM05D002425 ORTHO05D002709 4.4e-09 65.1 109 41.3
HPP92_018832 Vanilla planifolia HOM05D002425 ORTHO05D002709 4.4e-09 65.1 125 39.2
Ah.02g123430 Amaranthus hybridus HOM05D002425 ORTHO05D002709 5.7e-09 64.7 135 35.6
arahy.Tifrunner.gnm1.ann1.XH6SHZ Arachis hypogaea HOM05D002425 ORTHO05D002709 5.7e-09 64.7 98 42.9
Rhsim11G0141600 Rhododendron simsii HOM05D002425 ORTHO05D002709 5.7e-09 64.7 128 40.6
SalBow6G4961 Salvia bowleyana HOM05D002425 ORTHO05D002709 5.7e-09 64.7 111 44.1
Sed0026496 Sechium edule HOM05D002425 ORTHO05D002709 5.7e-09 64.7 97 44.3
Duzib052G1175 Durio zibethinus HOM05D002425 ORTHO05D002709 7.4e-09 64.3 130 36.2
Mapoly0071s0096 Marchantia polymorpha HOM05D002425 ORTHO05D002709 7.4e-09 64.3 102 42.2
unitig_899.g15644 Utricularia gibba HOM05D002425 ORTHO05D002709 7.4e-09 64.3 129 38.8
PSO210G7313 Papaver somniferum HOM05D002425 ORTHO05D002709 9.7e-09 63.9 129 38.8
ClCG08G011560 Citrullus lanatus HOM05D002425 ORTHO05D002709 1.3e-08 63.5 96 44.8
Pp3c2_30940 Physcomitrium patens HOM05D002425 ORTHO05D002709 1.3e-08 63.5 131 38.2
TAR628G0781 Trochodendron aralioides HOM05D002425 ORTHO05D002709 1.3e-08 63.5 128 35.2
vmacro01869 Vaccinium macrocarpon HOM05D002425 ORTHO05D002709 1.3e-08 63.5 145 37.2
HanXRQChr16g0514501 Helianthus annuus HOM05D002425 ORTHO05D002709 1.7e-08 63.2 94 44.7
Lsat_1_v5_gn_5_110320 Lactuca sativa HOM05D002425 ORTHO05D002709 1.7e-08 63.2 119 38.7
Zm00001eb053330 Zea mays HOM05D002425 ORTHO05D002709 1.7e-08 63.2 105 41.0
Medtr4g093770 Medicago truncatula HOM05D002425 ORTHO05D002709 2.2e-08 62.8 129 38.8
CBR_g23843 Chara braunii HOM05D002425 ORTHO05D002709 2.8e-08 62.4 123 39.0
Dinv36955 Davidia involucrata HOM05D002425 ORTHO05D002709 2.8e-08 62.4 123 39.0
ECA234G1117 Erigeron canadensis HOM05D002425 ORTHO05D002709 2.8e-08 62.4 125 40.0
Nn1g05629 Nelumbo nucifera HOM05D002425 ORTHO05D002709 2.8e-08 62.4 133 38.3
VMungo0251G1961 Vigna mungo HOM05D002425 ORTHO05D002709 2.8e-08 62.4 129 35.7
Atru.chr6.1302 Acer truncatum HOM05D002425 ORTHO05D002709 3.7e-08 62.0 135 35.6
Gohir.D02G201500 Gossypium hirsutum HOM05D002425 ORTHO05D002709 3.7e-08 62.0 94 39.4
Gorai.005G226300 Gossypium raimondii HOM05D002425 ORTHO05D002709 3.7e-08 62.0 94 39.4
Oeu059900.1 Olea europaea HOM05D002425 ORTHO05D002709 3.7e-08 62.0 127 39.4
Pp3c14_20840 Physcomitrium patens HOM05D002425 ORTHO05D002709 3.7e-08 62.0 105 38.1
Ah.03g143270 Amaranthus hybridus HOM05D002425 ORTHO05D002709 4.8e-08 61.6 121 38.8
Cpa.g.sc1556.2 Carica papaya HOM05D002425 ORTHO05D002709 4.8e-08 61.6 123 36.6
Prupe.8G071500 Prunus persica HOM05D002425 ORTHO05D002709 4.8e-08 61.6 119 36.1
CsaV3_2G030140 Cucumis sativus L. HOM05D002425 ORTHO05D002709 6.3e-08 61.2 123 40.7
Gohir.A03G177800 Gossypium hirsutum HOM05D002425 ORTHO05D002709 6.3e-08 61.2 94 39.4
vmacro13022 Vaccinium macrocarpon HOM05D002425 ORTHO05D002709 6.3e-08 61.2 129 38.8
Zm00001eb053320 Zea mays HOM05D002425 ORTHO05D002709 6.3e-08 61.2 123 36.6
MSTRG.16624 Avicennia marina HOM05D002425 ORTHO05D002709 8.2e-08 60.8 134 37.3
AUR62003687 Chenopodium quinoa HOM05D002425 ORTHO05D002709 8.2e-08 60.8 99 41.4
AUR62017999 Chenopodium quinoa HOM05D002425 ORTHO05D002709 8.2e-08 60.8 103 40.8
AUR62043607 Chenopodium quinoa HOM05D002425 ORTHO05D002709 8.2e-08 60.8 103 40.8
Ciclev10029537m.g Citrus clementina HOM05D002425 ORTHO05D002709 8.2e-08 60.8 128 36.7
MELO3C011073.2 Cucumis melo HOM05D002425 ORTHO05D002709 8.2e-08 60.8 95 45.3
Duzib132G0972 Durio zibethinus HOM05D002425 ORTHO05D002709 8.2e-08 60.8 124 37.1
Eucgr.I02610 Eucalyptus grandis HOM05D002425 ORTHO05D002709 8.2e-08 60.8 126 38.9
Lsat_1_v5_gn_7_83541 Lactuca sativa HOM05D002425 ORTHO05D002709 1.1e-07 60.5 121 36.4
Nn5g29830 Nelumbo nucifera HOM05D002425 ORTHO05D002709 1.1e-07 60.5 104 39.4
Hund16518 Selenicereus undatus HOM05D002425 ORTHO05D002709 1.1e-07 60.5 128 37.5
MD05G1048900 Malus domestica HOM05D002425 ORTHO05D002709 1.4e-07 60.1 122 39.3
Pp3c1_2010 Physcomitrium patens HOM05D002425 ORTHO05D002709 1.4e-07 60.1 135 35.6
unitig_746.g26891 Utricularia gibba HOM05D000423 ORTHO05D000284 1.4e-07 60.1 103 39.8
COL.COLO4_32410 Corchorus olitorius HOM05D002425 ORTHO05D002709 1.8e-07 59.7 131 36.6
Thhalv10014959m.g Eutrema salsugineum HOM05D002425 ORTHO05D002709 1.8e-07 59.7 134 38.1
THA.LOC104819323 Tarenaya hassleriana HOM05D002425 ORTHO05D002709 1.8e-07 59.7 122 38.5
Actinidia29337 Actinidia chinensis HOM05D002425 ORTHO05D002709 2.4e-07 59.3 127 37.0
AT5G09570 Arabidopsis thaliana HOM05D002425 ORTHO05D002709 2.4e-07 59.3 125 36.0
MSTRG.20275 Avicennia marina HOM05D002425 ORTHO05D002709 2.4e-07 59.3 100 41.0
CiPaw.05G028600 Carya illinoinensis HOM05D002425 ORTHO05D002709 2.4e-07 59.3 128 38.3
Migut.B00539 Erythranthe guttata HOM05D002425 ORTHO05D002709 2.4e-07 59.3 121 35.5
Hma1.2p1_0369F.1_g137460 Hydrangea macrophylla HOM05D002425 ORTHO05D002709 2.4e-07 59.3 96 40.6
Manes.07G041000 Manihot esculenta HOM05D002425 ORTHO05D002709 2.4e-07 59.3 126 38.9
PGR142G1682 Punica granatum HOM05D002425 ORTHO05D002709 2.4e-07 59.3 107 39.3
Gohir.A13G050200 Gossypium hirsutum HOM05D002425 ORTHO05D002709 3.1e-07 58.9 131 35.1
Duzib052G0188 Durio zibethinus HOM05D002425 ORTHO05D002709 4.1e-07 58.5 98 38.8
Gohir.D13G048866 Gossypium hirsutum HOM05D002425 ORTHO05D002709 4.1e-07 58.5 142 33.1
Gorai.013G054700 Gossypium raimondii HOM05D002425 ORTHO05D002709 4.1e-07 58.5 145 35.9
PGR042G3069 Punica granatum HOM05D002425 ORTHO05D002709 4.1e-07 58.5 104 41.3
Thecc.02G127700 Theobroma cacao HOM05D002425 ORTHO05D002709 4.1e-07 58.5 99 39.4
C09p09770 Brassica napus HOM05D002425 ORTHO05D002709 5.3e-07 58.2 116 34.5
CAN.G162.4 Capsicum annuum HOM05D002425 ORTHO05D002709 5.3e-07 58.2 105 40.0
HanXRQChr10g0297741 Helianthus annuus HOM05D002425 ORTHO05D002709 5.3e-07 58.2 109 36.7
GSVIVG01009202001 Vitis vinifera HOM05D002425 ORTHO05D002709 5.3e-07 58.2 122 36.1
A06p31070 Brassica napus HOM05D002425 ORTHO05D002709 7.0e-07 57.8 97 39.2
BraA06t26050Z Brassica rapa HOM05D002425 ORTHO05D002709 7.0e-07 57.8 97 39.2
CSS0041957 Camellia sinensis var. sinensis HOM05D002425 ORTHO05D002709 7.0e-07 57.8 120 34.2
CBR_g33919 Chara braunii HOM05D002773 ORTHO05D003110 7.0e-07 57.8 123 37.4
Gohir.D13G049000 Gossypium hirsutum HOM05D002425 ORTHO05D002709 7.0e-07 57.8 106 36.8
Lalb_Chr16g0383001 Lupinus albus HOM05D002425 ORTHO05D002709 7.0e-07 57.8 113 37.2
RcHm_v2.0_Chr6g0270231 Rosa chinensis HOM05D002425 ORTHO05D002709 7.0e-07 57.8 93 44.1
CBR_g18993 Chara braunii HOM05D001740 ORTHO05D002709 9.1e-07 57.4 125 37.6
ECA236G3977 Erigeron canadensis HOM05D002425 ORTHO05D002709 9.1e-07 57.4 117 38.5
MSTRG.5290 Avicennia marina HOM05D002425 ORTHO05D002709 1.2e-06 57.0 130 33.8
Lalb_Chr05g0217911 Lupinus albus HOM05D002425 ORTHO05D002709 1.2e-06 57.0 126 34.1
Oeu040882.1 Olea europaea HOM05D002425 ORTHO05D002709 1.5e-06 56.6 127 36.2
SGA_v2.0_scaffold32G12933 Striga asiatica HOM05D002425 ORTHO05D002709 1.5e-06 56.6 115 38.3
PSO170G5084 Papaver somniferum HOM05D002425 ORTHO05D002709 2.0e-06 56.2 100 40.0
Aa31LG1G17500 Aethionema arabicum HOM05D002425 ORTHO05D002709 2.6e-06 55.8 124 33.1
FvH4_2g11490 Fragaria vesca HOM05D002425 ORTHO05D002709 2.6e-06 55.8 100 40.0
FAN15G3528 Fragaria x ananassa HOM05D002425 ORTHO05D002709 2.6e-06 55.8 100 40.0
FAN20G0126 Fragaria x ananassa HOM05D002425 ORTHO05D002709 2.6e-06 55.8 100 40.0
Sp2g27490 Schrenkiella parvula HOM05D002425 ORTHO05D002709 2.6e-06 55.8 95 37.9
Actinidia19619 Actinidia chinensis HOM05D002425 ORTHO05D002709 3.4e-06 55.5 102 36.3
Aqoxy6G00822 Aquilegia oxysepala HOM05D002425 ORTHO05D002709 3.4e-06 55.5 130 33.1
C03p61870 Brassica napus HOM05D002425 ORTHO05D002709 3.4e-06 55.5 104 37.5
BolC3t18447H Brassica oleracea HOM05D002425 ORTHO05D002709 3.4e-06 55.5 104 37.5
CSS0030086 Camellia sinensis var. sinensis HOM05D002425 ORTHO05D002709 3.4e-06 55.5 99 36.4
CiPaw.07G163300 Carya illinoinensis HOM05D002425 ORTHO05D002709 3.4e-06 55.5 138 33.3
Nn1g05628 Nelumbo nucifera HOM05D002425 ORTHO05D002709 3.4e-06 55.5 126 35.7
SalBow6G2032 Salvia bowleyana HOM05D002425 ORTHO05D002709 3.4e-06 55.5 129 38.0
SGA_v2.0_scaffold337G49170 Striga asiatica HOM05D002425 ORTHO05D002709 3.4e-06 55.5 102 42.2
Ca_18393_v3 Cicer arietinum L. HOM05D002425 ORTHO05D002709 4.5e-06 55.1 101 38.6
CARHR278350 Cardamine hirsuta HOM05D002425 ORTHO05D002709 5.9e-06 54.7 133 34.6
FAN24G2949 Fragaria x ananassa HOM05D002425 ORTHO05D002709 5.9e-06 54.7 98 38.8
ATR0767G013 Amborella trichopoda HOM05D002425 ORTHO05D002709 7.7e-06 54.3 128 35.2
arahy.Tifrunner.gnm1.ann1.Y4VPDJ Arachis hypogaea HOM05D002425 ORTHO05D002709 7.7e-06 54.3 97 38.1
BolC9t59547H Brassica oleracea HOM05D002425 ORTHO05D002709 7.7e-06 54.3 127 35.4
TAR628G0637 Trochodendron aralioides HOM05D002425 ORTHO05D002709 7.7e-06 54.3 124 37.1
HPP92_017790 Vanilla planifolia HOM05D002425 ORTHO05D002709 7.7e-06 54.3 131 37.4


User provided reference genes

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