Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO361G0428 Selaginella moellendorffii HOM05D002376 ORTHO05D008821 2.0e-50 202.2 106 100.0
AagrBONN_evm.TU.Sc2ySwM_228.448 Anthoceros agrestis HOM05D002376 ORTHO05D008821 5.0e-22 107.8 101 56.4
Pp3c20_8500 Physcomitrium patens HOM05D002376 ORTHO05D008821 6.6e-22 107.5 96 55.2
Mapoly0069s0031 Marchantia polymorpha HOM05D002376 ORTHO05D008821 1.1e-21 106.7 101 52.5
RcHm_v2.0_Chr5g0072361 Rosa chinensis HOM05D002376 ORTHO05D008821 4.3e-21 104.8 102 50.0
Rhsim13G0061900 Rhododendron simsii HOM05D002376 ORTHO05D008821 9.5e-21 103.6 109 48.6
LjContig00141g0012114 Lotus japonicus HOM05D002376 ORTHO05D008821 1.2e-20 103.2 102 49.0
Cfa010938 Carpinus fangiana HOM05D002376 ORTHO05D008821 1.6e-20 102.8 102 50.0
FvH4_3g40170 Fragaria vesca HOM05D002376 ORTHO05D008821 2.1e-20 102.4 102 48.0
Aqoxy4G02143 Aquilegia oxysepala HOM05D002376 ORTHO05D008821 2.8e-20 102.1 102 49.0
CSS0003249 Camellia sinensis var. sinensis HOM05D002376 ORTHO05D008821 4.7e-20 101.3 102 50.0
Carub.0004s1148 Capsella rubella HOM05D002376 ORTHO05D008821 4.7e-20 101.3 102 49.0
MD11G1061300 Malus domestica HOM05D002376 ORTHO05D008821 8.1e-20 100.5 102 48.0
Manes.18G140300 Manihot esculenta HOM05D002376 ORTHO05D008821 8.1e-20 100.5 105 47.6
PGR102G2282 Punica granatum HOM05D002376 ORTHO05D008821 8.1e-20 100.5 102 48.0
vmacro02895 Vaccinium macrocarpon HOM05D002376 ORTHO05D008821 8.1e-20 100.5 99 52.5
BcaC01g05988 Brassica carinata HOM05D002376 ORTHO05D008821 1.1e-19 100.1 102 48.0
A03p16960 Brassica napus HOM05D002376 ORTHO05D004654 1.1e-19 100.1 102 48.0
C03p19980 Brassica napus HOM05D002376 ORTHO05D004654 1.1e-19 100.1 102 48.0
BolC3t14376H Brassica oleracea HOM05D002376 ORTHO05D004654 1.1e-19 100.1 102 48.0
Glyma.02G234100 Glycine max HOM05D002376 ORTHO05D008821 1.1e-19 100.1 102 48.0
AT2G30330 Arabidopsis thaliana HOM05D002376 ORTHO05D008821 1.4e-19 99.8 102 48.0
CiPaw.13G066200 Carya illinoinensis HOM05D002376 ORTHO05D008821 1.4e-19 99.8 102 47.1
Sp4g12890 Schrenkiella parvula HOM05D002376 ORTHO05D008821 1.4e-19 99.8 102 48.0
HanXRQChr01g0012551 Helianthus annuus HOM05D002376 ORTHO05D008821 1.8e-19 99.4 102 48.0
THA.LOC104800780 Tarenaya hassleriana HOM05D002376 ORTHO05D008821 1.8e-19 99.4 102 47.1
AL4G25190 Arabidopsis lyrata HOM05D002376 ORTHO05D008821 2.3e-19 99.0 102 48.0
BcaB01g04113 Brassica carinata HOM05D002376 ORTHO05D008821 2.3e-19 99.0 102 47.1
Haze_24442 Corylus avellana HOM05D002376 ORTHO05D008821 2.3e-19 99.0 102 48.0
CARHR123650 Cardamine hirsuta HOM05D002376 ORTHO05D008821 3.1e-19 98.6 102 48.0
Aa31LG5G6370 Aethionema arabicum HOM05D002376 ORTHO05D008821 4.0e-19 98.2 105 47.6
ATR0586G003 Amborella trichopoda HOM05D002376 ORTHO05D008821 4.0e-19 98.2 104 48.1
arahy.Tifrunner.gnm1.ann1.F02FPT Arachis hypogaea HOM05D002376 ORTHO05D008821 4.0e-19 98.2 102 47.1
CSS0028475 Camellia sinensis var. sinensis HOM05D002376 ORTHO05D008821 4.0e-19 98.2 99 50.5
TWI75G1859 Tripterygium wilfordii HOM05D002376 ORTHO05D008821 4.0e-19 98.2 101 49.5
CANSAT54G2364 Cannabis sativa HOM05D002376 ORTHO05D008821 5.2e-19 97.8 101 46.5
Thhalv10017367m.g Eutrema salsugineum HOM05D002376 ORTHO05D008821 5.2e-19 97.8 102 47.1
Lsat_1_v5_gn_5_175460 Lactuca sativa HOM05D002376 ORTHO05D008821 5.2e-19 97.8 102 46.1
Medtr5g074880 Medicago truncatula HOM05D002376 ORTHO05D008821 5.2e-19 97.8 102 49.0
Prupe.6G044100 Prunus persica HOM05D002376 ORTHO05D008821 5.2e-19 97.8 102 46.1
Migut.H01101 Erythranthe guttata HOM05D002376 ORTHO05D008821 6.8e-19 97.4 99 47.5
Phvul.008G249600 Phaseolus vulgaris HOM05D002376 ORTHO05D008821 6.8e-19 97.4 102 46.1
QL03p067094 Quercus lobata HOM05D002376 ORTHO05D008821 6.8e-19 97.4 101 47.5
Thecc.09G361000 Theobroma cacao HOM05D002376 ORTHO05D008821 8.9e-19 97.1 102 48.0
Gorai.003G151600 Gossypium raimondii HOM05D002376 ORTHO05D008821 1.2e-18 96.7 101 46.5
Dinv28710 Davidia involucrata HOM05D002376 ORTHO05D008821 1.5e-18 96.3 99 49.5
Oeu064671.1 Olea europaea HOM05D000883 ORTHO05D002942 1.5e-18 96.3 99 48.5
Gohir.D03G144300 Gossypium hirsutum HOM05D002376 ORTHO05D008821 2.0e-18 95.9 101 46.5
PSO170G0682 Papaver somniferum HOM05D002376 ORTHO05D008821 2.0e-18 95.9 101 47.5
COL.COLO4_11184 Corchorus olitorius HOM05D002376 ORTHO05D008821 2.6e-18 95.5 101 46.5
Eucgr.B02271 Eucalyptus grandis HOM05D002376 ORTHO05D008821 2.6e-18 95.5 101 46.5
Eucgr.L02725 Eucalyptus grandis HOM05D002376 ORTHO05D008821 2.6e-18 95.5 101 46.5
unitig_22.g5204 Utricularia gibba HOM05D006159 ORTHO05D007624 4.4e-18 94.7 102 45.1
Ah.15g096510 Amaranthus hybridus HOM05D002376 ORTHO05D008821 5.8e-18 94.4 102 45.1
Gohir.A03G024200 Gossypium hirsutum HOM05D002376 ORTHO05D008821 5.8e-18 94.4 101 45.5
Eucgr.B04014 Eucalyptus grandis HOM05D002376 ORTHO05D008821 7.5e-18 94.0 101 46.5
Eucgr.B04017 Eucalyptus grandis HOM05D002376 ORTHO05D008821 7.5e-18 94.0 101 46.5
GSVIVG01024598001 Vitis vinifera HOM05D002376 ORTHO05D008821 7.5e-18 94.0 102 46.1
Psat2g052040 Pisum sativum HOM05D002376 ORTHO05D008821 1.3e-17 93.2 101 45.5
CDE06G1730 Ceratophyllum demersum HOM05D002376 ORTHO05D008821 1.7e-17 92.8 102 46.1
AUR62009722 Chenopodium quinoa HOM05D002376 ORTHO05D008821 1.7e-17 92.8 102 46.1
Lalb_Chr17g0345531 Lupinus albus HOM05D002376 ORTHO05D008821 1.7e-17 92.8 101 43.6
TAR287G0002 Trochodendron aralioides HOM05D002376 ORTHO05D008821 1.7e-17 92.8 102 46.1
Nitab4.5_0000755g0130 Nicotiana tabacum HOM05D002376 ORTHO05D008821 2.2e-17 92.4 100 48.0
EL10Ac7g15863 Beta vulgaris HOM05D002376 ORTHO05D008821 2.9e-17 92.0 102 43.1
ClCG02G019170 Citrullus lanatus HOM05D002376 ORTHO05D008821 2.9e-17 92.0 102 44.1
Potri.013G156700 Populus trichocarpa HOM05D002376 ORTHO05D008821 2.9e-17 92.0 101 46.5
Duzib168G1911 Durio zibethinus HOM05D002376 ORTHO05D008821 3.7e-17 91.7 101 45.5
SalBow2G2295 Salvia bowleyana HOM05D002376 ORTHO05D008821 3.7e-17 91.7 99 44.4
Actinidia32596 Actinidia chinensis HOM05D002376 ORTHO05D008821 4.9e-17 91.3 99 48.5
AUR62036225 Chenopodium quinoa HOM05D002376 ORTHO05D008821 4.9e-17 91.3 102 45.1
TAR623G0666 Trochodendron aralioides HOM05D002376 ORTHO05D008821 4.9e-17 91.3 102 44.1
Sabra13G0126300 Salix brachista HOM05D002376 ORTHO05D008821 6.4e-17 90.9 104 46.2
HPP92_009016 Vanilla planifolia HOM05D002376 ORTHO05D008821 6.4e-17 90.9 101 46.5
MELO3C025682.2 Cucumis melo HOM05D002376 ORTHO05D008821 8.3e-17 90.5 102 44.1
Nitab4.5_0009324g0020 Nicotiana tabacum HOM05D002376 ORTHO05D008821 8.3e-17 90.5 99 47.5
Actinidia23182 Actinidia chinensis HOM05D002376 ORTHO05D008821 1.1e-16 90.1 97 48.5
Cc01_g09100 Coffea canephora HOM05D002376 ORTHO05D008821 1.1e-16 90.1 102 45.1
Lj1A123G47 Lonicera japonica HOM05D002376 ORTHO05D008821 1.1e-16 90.1 99 46.5
SalBow2G0685 Salvia bowleyana HOM05D002376 ORTHO05D008821 1.1e-16 90.1 99 44.4
TPR.G17753 Trifolium pratense HOM05D002376 ORTHO05D008821 1.1e-16 90.1 102 44.1
CsaV3_6G019000 Cucumis sativus L. HOM05D002376 ORTHO05D008821 1.4e-16 89.7 102 43.1
DCAR_014464 Daucus carota HOM05D002376 ORTHO05D008821 1.4e-16 89.7 102 42.2
Lalb_Chr10g0103701 Lupinus albus HOM05D002376 ORTHO05D008821 1.9e-16 89.4 101 41.6
Peaxi162Scf00003g00413 Petunia axillaris HOM05D002376 ORTHO05D008821 2.4e-16 89.0 99 45.5
CAN.G1358.8 Capsicum annuum HOM05D002376 ORTHO05D008821 3.2e-16 88.6 99 45.5
Ciclev10017044m.g Citrus clementina HOM05D002376 ORTHO05D008821 3.2e-16 88.6 102 43.1
Sed0011436 Sechium edule HOM05D002376 ORTHO05D008821 3.2e-16 88.6 101 43.6
arahy.Tifrunner.gnm1.ann1.6WW78Y Arachis hypogaea HOM05D002376 ORTHO05D008821 4.1e-16 88.2 139 36.0
Os11g0112300 Oryza sativa ssp. japonica HOM05D002376 ORTHO05D008821 4.1e-16 88.2 102 43.1
Solyc11g068450.2 Solanum lycopersicum HOM05D002376 ORTHO05D008821 5.4e-16 87.8 99 45.5
Sopen11g027160 Solanum pennellii HOM05D002376 ORTHO05D008821 5.4e-16 87.8 99 45.5
Atru.chr6.2418 Acer truncatum HOM05D002376 ORTHO05D008821 9.2e-16 87.0 102 41.2
PGSC0003DMG400026358 Solanum tuberosum HOM05D002376 ORTHO05D008821 1.2e-15 86.7 99 44.4
CBR_g4891 Chara braunii HOM05D006348 ORTHO05D008261 4.6e-15 84.7 89 46.1
MBI15_g06972_MAGBIO Magnolia biondii HOM05D002376 ORTHO05D008821 3.0e-14 82.0 141 36.9
Prupe.6G095400 Prunus persica HOM05D002376 ORTHO05D008821 8.6e-14 80.5 102 41.2
MD03G1059100 Malus domestica HOM05D002376 ORTHO05D008821 1.1e-13 80.1 76 53.9
CSS0017661 Camellia sinensis var. sinensis HOM05D002376 ORTHO05D008821 1.6e-12 76.3 74 52.7
PSO017G2121 Papaver somniferum HOM05D002376 ORTHO05D008821 3.6e-12 75.1 89 44.9
FAN21G3738 Fragaria x ananassa HOM05D002376 ORTHO05D008821 4.7e-12 74.7 73 47.9
Dinv12257 Davidia involucrata HOM05D002376 ORTHO05D008821 1.8e-11 72.8 99 39.4
FAN11G0211 Fragaria x ananassa HOM05D002376 ORTHO05D008821 2.3e-11 72.4 74 45.9
Cpa.g.sc2.331 Carica papaya HOM05D002376 ORTHO05D008821 8.9e-11 70.5 81 42.0
COL.COLO4_11185 Corchorus olitorius HOM05D002376 ORTHO05D008821 1.2e-10 70.1 72 47.2
FAN16G0225 Fragaria x ananassa HOM05D002376 ORTHO05D008821 1.2e-10 70.1 73 43.8
SGA_v2.0_scaffold77G25373 Striga asiatica HOM05D002376 ORTHO05D008821 1.5e-10 69.7 78 42.3
MBI07_g35969_MAGBIO Magnolia biondii HOM05D002376 ORTHO05D008821 3.4e-10 68.6 75 48.0
Ca_05691_v3 Cicer arietinum L. HOM05D002376 ORTHO05D008821 7.6e-10 67.4 72 47.2
Sc06g0008070 Simmondsia chinensis HOM05D002376 ORTHO05D008821 9.9e-10 67.0 70 47.1
VMungo0647G0470 Vigna mungo HOM05D005825 ORTHO05D006483 3.8e-09 65.1 70 45.7
Hund18966 Selenicereus undatus HOM05D002376 ORTHO05D008821 4.9e-09 64.7 73 42.5
Nn4g26021 Nelumbo nucifera HOM05D002376 ORTHO05D008821 1.4e-08 63.2 85 37.6
MCO04G004 Micromonas commoda HOM05D002376 ORTHO05D008821 4.1e-08 61.6 98 33.7
Os12g0111900 Oryza sativa ssp. japonica HOM05D002376 ORTHO05D008821 4.1e-08 61.6 89 34.8
Zm00001eb276260 Zea mays HOM05D002376 ORTHO05D008821 1.3e-06 56.6 69 42.0


User provided reference genes

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