Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO358G0582 Selaginella moellendorffii HOM05D003586 ORTHO05D004036 0.0e+00 3817.7 1999 100.0
Mapoly0043s0008 Marchantia polymorpha HOM05D003586 ORTHO05D004036 0.0e+00 1210.7 2168 36.0
Pp3c3_10580 Physcomitrium patens HOM05D003586 ORTHO05D004036 3.6e-310 1069.3 2184 34.3
AagrBONN_evm.TU.Sc2ySwM_344.3595 Anthoceros agrestis HOM05D003586 ORTHO05D004036 3.5e-273 946.4 2070 32.4
TAR375G0563 Trochodendron aralioides HOM05D003586 ORTHO05D004036 4.6e-257 892.9 2179 30.7
CSS0040773 Camellia sinensis var. sinensis HOM05D003586 ORTHO05D004036 2.5e-255 887.1 2170 30.9
PSO675G9104 Papaver somniferum HOM05D003586 ORTHO05D004036 3.1e-253 880.2 2175 30.7
Potri.003G151500 Populus trichocarpa HOM05D003586 ORTHO05D004036 7.5e-252 875.5 2153 30.7
PSO732G0142 Papaver somniferum HOM05D003586 ORTHO05D004036 2.4e-250 870.5 2174 30.7
Manes.14G038400 Manihot esculenta HOM05D003586 ORTHO05D004036 9.2e-250 868.6 2169 30.8
CsaV3_4G004170 Cucumis sativus L. HOM05D003586 ORTHO05D004036 2.3e-248 864.0 2179 31.0
CBR_g19186 Chara braunii HOM05D003586 ORTHO05D004036 9.5e-247 858.6 2310 30.3
AUR62025663 Chenopodium quinoa HOM05D003586 ORTHO05D004036 2.8e-246 857.1 2168 30.4
Cfa013573 Carpinus fangiana HOM05D003586 ORTHO05D004036 3.1e-245 853.6 2182 30.1
MD07G1249300 Malus domestica HOM05D003586 ORTHO05D004036 5.2e-245 852.8 2183 30.7
Dinv06595 Davidia involucrata HOM05D003586 ORTHO05D004036 8.9e-245 852.0 2181 30.5
Aqoxy7G00839 Aquilegia oxysepala HOM05D003586 ORTHO05D004036 2.0e-244 850.9 2181 30.3
Hund18595 Selenicereus undatus HOM05D003586 ORTHO05D004036 2.0e-244 850.9 2167 30.5
GSVIVG01013976001 Vitis vinifera HOM05D003586 ORTHO05D004036 2.6e-244 850.5 2175 29.8
Thecc.03G149300 Theobroma cacao HOM05D003586 ORTHO05D004036 5.8e-244 849.4 2195 30.3
Ciclev10004122m.g Citrus clementina HOM05D003586 ORTHO05D004036 9.9e-244 848.6 2174 30.2
ATR0057G101 Amborella trichopoda HOM05D003586 ORTHO05D004036 3.7e-243 846.7 2204 30.9
Sed0010855 Sechium edule HOM05D003586 ORTHO05D004036 3.7e-243 846.7 2183 30.9
Nn1g00886 Nelumbo nucifera HOM05D003586 ORTHO05D004036 8.3e-243 845.5 2188 30.4
AUR62001342 Chenopodium quinoa HOM05D003586 ORTHO05D004036 1.9e-242 844.3 2171 30.5
CSS0004894 Camellia sinensis var. sinensis HOM05D003586 ORTHO05D004036 2.4e-242 844.0 2174 29.9
Oeu060859.1 Olea europaea HOM05D003586 ORTHO05D004036 7.1e-242 842.4 2170 30.2
Gorai.001G050900 Gossypium raimondii HOM05D003586 ORTHO05D004036 2.1e-241 840.9 2196 30.1
vmacro06834 Vaccinium macrocarpon HOM05D003586 ORTHO05D004036 3.5e-241 840.1 2201 29.6
arahy.Tifrunner.gnm1.ann1.DI5547 Arachis hypogaea HOM05D003586 ORTHO05D004036 8.6e-240 835.5 2158 29.3
Gohir.D07G047701 Gossypium hirsutum HOM05D003586 ORTHO05D004036 1.1e-239 835.1 2194 29.9
LjContig00272g0012466 Lotus japonicus HOM05D003586 ORTHO05D004036 5.6e-239 832.8 2178 29.9
arahy.Tifrunner.gnm1.ann1.1899LM Arachis hypogaea HOM05D003586 ORTHO05D004036 7.3e-239 832.4 2158 29.4
PGR042G0622 Punica granatum HOM05D003586 ORTHO05D004036 6.2e-238 829.3 2176 29.7
DCAR_027698 Daucus carota HOM05D003586 ORTHO05D004036 1.4e-237 828.2 2182 30.8
Sabra03G0109700 Salix brachista HOM05D003586 ORTHO05D004036 1.8e-237 827.8 2281 29.1
EL10Ac7g18161 Beta vulgaris HOM05D003586 ORTHO05D004036 8.9e-237 825.5 2167 30.1
FvH4_7g26990 Fragaria vesca HOM05D003586 ORTHO05D004036 7.6e-236 822.4 2145 30.3
Zm00001eb123540 Zea mays HOM05D003586 ORTHO05D004036 7.6e-236 822.4 2171 29.3
Psat2g013320 Pisum sativum HOM05D003586 ORTHO05D004036 3.8e-235 820.1 2162 29.6
QL09p028029 Quercus lobata HOM05D003586 ORTHO05D004036 8.4e-235 818.9 2231 29.5
Sopen03g024310 Solanum pennellii HOM05D003586 ORTHO05D004036 8.4e-235 818.9 2172 29.8
Peaxi162Scf00271g00727 Petunia axillaris HOM05D003586 ORTHO05D004036 1.4e-234 818.1 2174 30.0
Duzib205G0263 Durio zibethinus HOM05D003586 ORTHO05D004036 1.9e-234 817.8 2144 29.8
Gohir.A07G043301 Gossypium hirsutum HOM05D003586 ORTHO05D004036 4.2e-234 816.6 2183 30.2
Lalb_Chr04g0248471 Lupinus albus HOM05D003586 ORTHO05D004036 2.7e-233 813.9 2164 30.0
Solyc03g093480.3 Solanum lycopersicum HOM05D003586 ORTHO05D004036 2.7e-233 813.9 2172 29.7
Rhsim03G0161600 Rhododendron simsii HOM05D003586 ORTHO05D004036 7.8e-233 812.4 2269 29.0
Lsat_1_v5_gn_8_9561 Lactuca sativa HOM05D003586 ORTHO05D004036 3.9e-232 810.1 2158 29.8
FAN06G2502 Fragaria x ananassa HOM05D003586 ORTHO05D004036 7.3e-231 805.8 2179 30.1
COL.COLO4_37344 Corchorus olitorius HOM05D003586 ORTHO05D004036 3.6e-230 803.5 2222 29.6
MSTRG.139 Avicennia marina HOM05D003586 ORTHO05D004036 4.8e-230 803.1 2179 30.6
FAN03G1177 Fragaria x ananassa HOM05D003586 ORTHO05D004036 4.8e-230 803.1 2168 29.5
Ca_26483_v3 Cicer arietinum L. HOM05D003586 ORTHO05D004036 6.2e-230 802.7 2160 29.3
THA.LOC104811536 Tarenaya hassleriana HOM05D003586 ORTHO05D004036 1.4e-229 801.6 2227 29.3
HanXRQChr05g0139491 Helianthus annuus HOM05D003586 ORTHO05D004036 1.8e-229 801.2 2176 29.4
TWI23G0434 Tripterygium wilfordii HOM05D003586 ORTHO05D004036 1.8e-229 801.2 2182 28.5
Nitab4.5_0003173g0040 Nicotiana tabacum HOM05D003586 ORTHO05D004036 5.3e-229 799.7 2167 29.4
Cc02_g04680 Coffea canephora HOM05D003586 ORTHO05D004036 2.9e-227 793.9 2183 29.9
FAN01G1639 Fragaria x ananassa HOM05D003586 ORTHO05D004036 3.2e-226 790.4 2182 29.4
Prupe.2G273000 Prunus persica HOM05D003586 ORTHO05D004036 4.2e-226 790.0 2180 29.7
FAN10G2285 Fragaria x ananassa HOM05D003586 ORTHO05D004036 5.4e-226 789.6 2183 29.4
TPR.G1178 Trifolium pratense HOM05D003586 ORTHO05D004036 2.1e-225 787.7 2147 29.1
Lj8C46T11 Lonicera japonica HOM05D003586 ORTHO05D004036 3.3e-223 780.4 2120 29.6
AT3G06530 Arabidopsis thaliana HOM05D003586 ORTHO05D004036 4.3e-223 780.0 2234 28.6
Glyma.02G290200 Glycine max HOM05D003586 ORTHO05D004036 1.6e-222 778.1 2177 29.5
Phvul.008G266400 Phaseolus vulgaris HOM05D003586 ORTHO05D004036 3.6e-222 776.9 2176 29.3
Haze_22192 Corylus avellana HOM05D003586 ORTHO05D004036 1.8e-221 774.6 2214 28.6
Carub.0003s0599 Capsella rubella HOM05D003586 ORTHO05D004036 1.2e-220 771.9 2227 28.1
Migut.O00372 Erythranthe guttata HOM05D003586 ORTHO05D004036 4.9e-219 766.5 2171 29.0
Sp3g05470 Schrenkiella parvula HOM05D003586 ORTHO05D004036 1.1e-218 765.4 2207 28.3
Glyma.14G024600 Glycine max HOM05D003586 ORTHO05D004036 5.4e-218 763.1 2180 29.4
BraA05t22871Z Brassica rapa HOM05D003586 ORTHO05D004036 7.1e-218 762.7 2231 28.7
CARHR081080 Cardamine hirsuta HOM05D003586 ORTHO05D004036 2.7e-217 760.8 2222 28.5
Thhalv10019871m.g Eutrema salsugineum HOM05D003586 ORTHO05D004036 1.3e-216 758.4 2219 28.0
AL3G17560 Arabidopsis lyrata HOM05D003586 ORTHO05D004036 1.5e-215 755.0 2234 27.9
C05p60700 Brassica napus HOM05D003586 ORTHO05D004036 2.8e-214 750.7 2226 28.2
Ah.08g217720 Amaranthus hybridus HOM05D003586 ORTHO05D004036 2.4e-213 747.7 2147 29.0
ECA233G0107 Erigeron canadensis HOM05D003586 ORTHO05D004036 1.2e-212 745.3 2176 28.7
Medtr5g092370 Medicago truncatula HOM05D003586 ORTHO05D004036 1.2e-212 745.3 2147 29.2
Aa31LG5G17060 Aethionema arabicum HOM05D003586 ORTHO05D004036 2.0e-212 744.6 2214 27.9
BolC5t34730H Brassica oleracea HOM05D003586 ORTHO05D004036 4.9e-211 740.0 2234 28.1
SGA_v2.0_scaffold56G19917 Striga asiatica HOM05D003586 ORTHO05D004036 2.5e-202 711.1 2284 28.0
Sc20g0000680 Simmondsia chinensis HOM05D003586 ORTHO05D004036 6.3e-198 696.4 1932 28.7
CDE04G1406 Ceratophyllum demersum HOM05D003586 ORTHO05D004036 2.5e-186 657.9 2162 27.0
SHI14045 Sapria himalayana HOM05D003586 ORTHO05D004036 1.7e-182 645.2 2296 27.3
CiPaw.07G185400 Carya illinoinensis HOM05D003586 ORTHO05D004036 3.2e-178 630.9 1969 27.1
RcHm_v2.0_Chr1g0373721 Rosa chinensis HOM05D003586 ORTHO05D004036 6.5e-163 580.1 1768 28.2
CANSAT56G2655 Cannabis sativa HOM05D003586 ORTHO05D004036 1.0e-160 572.8 1818 28.5
Eucgr.A02921 Eucalyptus grandis HOM05D003586 ORTHO05D004036 8.8e-160 569.7 1763 28.5
Nitab4.5_0005495g0020 Nicotiana tabacum HOM05D003586 ORTHO05D004036 1.7e-158 565.5 1898 27.2
Actinidia13607 Actinidia chinensis HOM05D003586 ORTHO05D004036 2.9e-155 554.7 1336 31.7
BolC3t16501H Brassica oleracea HOM05D003586 ORTHO05D004036 7.5e-151 540.0 1817 26.7
BraA03t12653Z Brassica rapa HOM05D003586 ORTHO05D004036 3.7e-150 537.7 1814 26.8
A03p34730 Brassica napus HOM05D003586 ORTHO05D004036 8.3e-150 536.6 1812 26.5
A05p41500 Brassica napus HOM05D003586 ORTHO05D004036 5.4e-149 533.9 1816 27.6
ClCG07G016940 Citrullus lanatus HOM05D003586 ORTHO05D004036 8.6e-147 526.6 1696 27.9
unitig_62.g23920 Utricularia gibba HOM05D003586 ORTHO05D004036 1.6e-145 522.3 2148 26.9
SalBow2G0990 Salvia bowleyana HOM05D003586 ORTHO05D004036 4.7e-145 520.8 1362 30.4
C03p42210 Brassica napus HOM05D003586 ORTHO05D004036 5.8e-143 513.8 1360 29.6
HPP92_014934 Vanilla planifolia HOM05D003586 ORTHO05D004036 1.6e-132 479.2 1193 30.9
CAN.G485.20 Capsicum annuum HOM05D003586 ORTHO05D004036 1.1e-130 473.0 1352 28.8
Hma1.2p1_1404F.1_g281290 Hydrangea macrophylla HOM05D003586 ORTHO05D004036 1.5e-130 472.6 1058 32.8
Cpa.g.sc13.262 Carica papaya HOM05D003586 ORTHO05D004036 1.8e-128 465.7 974 33.7
Atru.chr1.904 Acer truncatum HOM05D003586 ORTHO05D004036 2.3e-128 465.3 1402 28.5
MELO3C017650.2 Cucumis melo HOM05D003586 ORTHO05D004036 1.9e-117 429.1 1181 29.3
MBI05_g28033_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 2.3e-115 422.2 788 37.2
SEGI_04827 Sequoiadendron giganteum HOM05D003586 ORTHO05D004036 1.2e-108 399.8 651 36.9
Hma1.2p1_1404F.1_g281300 Hydrangea macrophylla HOM05D003586 ORTHO05D004036 1.3e-102 379.8 731 35.8
HPP92_014907 Vanilla planifolia HOM05D003586 ORTHO05D004036 7.4e-98 364.0 1148 26.6
MBI13_g48198_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 6.7e-91 340.9 831 32.9
MBI01_g47166_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 1.1e-85 323.6 672 34.5
Cre12.g548000 Chlamydomonas reinhardtii HOM05D003586 ORTHO05D004036 1.8e-80 306.2 2568 20.9
Hma1.2p1_1580F.1_g291890 Hydrangea macrophylla HOM05D003586 ORTHO05D004036 2.6e-79 302.4 638 31.5
ClCG07G016950 Citrullus lanatus HOM05D003586 ORTHO05D004036 1.1e-77 297.0 495 36.4
CAN.G485.19 Capsicum annuum HOM05D003586 ORTHO05D004036 1.8e-75 289.7 640 31.2
MBI13_g42134_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 3.9e-75 288.5 800 29.9
SalBow2G2772 Salvia bowleyana HOM05D003586 ORTHO05D004036 3.3e-74 285.4 622 30.7
Cpa.g.sc13.258 Carica papaya HOM05D003586 ORTHO05D004036 5.7e-74 284.6 560 32.7
CANSAT56G4028 Cannabis sativa HOM05D003586 ORTHO05D004036 8.5e-70 270.8 727 29.7
MBI01_g18557_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 1.2e-63 250.4 405 41.7
MCO07G739 Micromonas commoda HOM05D003586 ORTHO05D004036 1.8e-59 236.5 559 30.4
RcHm_v2.0_Chr1g0373711 Rosa chinensis HOM05D003586 ORTHO05D004036 5.2e-59 235.0 361 38.8
MBI05_g26487_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 9.7e-58 230.7 403 35.0
MBI05_g26488_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 1.7e-54 219.9 1322 24.0
THA.LOC104802945 Tarenaya hassleriana HOM05D003586 ORTHO05D004036 2.9e-54 219.2 258 49.2
Oeu055354.1 Olea europaea HOM05D003586 ORTHO05D004036 4.4e-50 205.3 391 34.8
MBI01_g30817_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 2.2e-49 203.0 598 29.4
Nitab4.5_0005495g0030 Nicotiana tabacum HOM05D003586 ORTHO05D004036 3.7e-49 202.2 312 37.5
Os04g0548300 Oryza sativa ssp. japonica HOM05D003586 ORTHO05D004036 2.4e-48 199.5 230 49.6
MBI01_g47186_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 4.5e-47 195.3 677 27.9
SMO142G0017 Selaginella moellendorffii HOM05D003586 ORTHO05D004036 8.0e-44 184.5 211 57.8
TPR.G35189 Trifolium pratense HOM05D003586 ORTHO05D004036 8.0e-44 184.5 390 31.0
Migut.F01200 Erythranthe guttata HOM05D003586 ORTHO05D004036 1.0e-43 184.1 219 46.1
FAN06G2869 Fragaria x ananassa HOM05D003586 ORTHO05D004036 1.2e-42 180.6 196 49.0
Oeu013973.1 Olea europaea HOM05D003586 ORTHO05D004036 3.1e-40 172.6 305 36.4
Cfa023294 Carpinus fangiana HOM05D003586 ORTHO05D004036 2.3e-38 166.4 2052 20.0
MBI13_g19469_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 5.2e-35 155.2 707 24.2
SMO358G0141 Selaginella moellendorffii HOM05D003586 ORTHO05D377094 6.8e-35 154.8 242 47.5
PGSC0003DMG400010751 Solanum tuberosum HOM05D003586 ORTHO05D004036 2.1e-28 133.3 112 58.0
Dinv06589 Davidia involucrata HOM05D003586 ORTHO05D004036 3.1e-27 129.4 129 52.7
MBI01_g24305_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 1.9e-24 120.2 247 32.4
SHI14048 Sapria himalayana HOM05D003586 ORTHO05D004036 1.2e-23 117.5 793 23.6
SHI14050 Sapria himalayana HOM05D003586 ORTHO05D004036 7.8e-23 114.8 146 45.2
MBI13_g17200_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 3.9e-22 112.5 94 61.7
SMO152G0001 Selaginella moellendorffii HOM05D036735 ORTHO05D004036 3.3e-21 109.4 185 44.9
SMO238G0040 Selaginella moellendorffii HOM05D036735 ORTHO05D004036 4.3e-21 109.0 186 44.6
SMO152G0003 Selaginella moellendorffii HOM05D036735 ORTHO05D004036 9.5e-21 107.8 185 44.3
PRCOL_00000377 Prasinoderma coloniale HOM05D003586 ORTHO05D004036 1.1e-19 104.4 887 21.5
Rhsim03G0111100 Rhododendron simsii HOM05D003586 ORTHO05D004036 5.8e-18 98.6 180 33.3
Psat0s4851g0040 Pisum sativum HOM05D003586 ORTHO05D004036 2.9e-17 96.3 221 27.1
Psat0s7016g0120 Pisum sativum HOM05D003586 ORTHO05D004036 2.9e-17 96.3 221 27.1
PSO782G1165 Papaver somniferum HOM05D003586 ORTHO05D004036 3.2e-16 92.8 307 27.4
Lsat_1_v5_gn_1_161 Lactuca sativa HOM05D003586 ORTHO05D004036 4.6e-15 89.0 237 27.4
MBI01_g47337_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 7.3e-13 81.6 458 23.8
Psat5g116160 Pisum sativum HOM05D003586 ORTHO05D004036 3.8e-09 69.3 92 34.8
SEGI_38341 Sequoiadendron giganteum HOM05D003586 ORTHO05D004036 4.9e-09 68.9 121 33.9
Gorai.003G117300 Gossypium raimondii HOM05D003586 ORTHO05D004036 6.4e-09 68.6 179 25.1
Gohir.D03G110801 Gossypium hirsutum HOM05D003586 ORTHO05D004036 1.2e-07 64.3 179 24.6
SHI14054 Sapria himalayana HOM05D003586 ORTHO05D004036 3.5e-07 62.8 65 49.2


User provided reference genes

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