Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO358G0388 Selaginella moellendorffii HOM05D004913 ORTHO05D006150 7.9e-181 637.1 348 100.0
AagrBONN_evm.TU.Sc2ySwM_362.2200 Anthoceros agrestis HOM05D004913 ORTHO05D006150 1.5e-59 234.2 238 60.9
Potri.008G160800 Populus trichocarpa HOM05D004913 ORTHO05D006150 2.7e-56 223.4 356 46.3
THA.LOC104815979 Tarenaya hassleriana HOM05D004913 ORTHO05D006150 3.5e-56 223.0 296 49.3
GSVIVG01018096001 Vitis vinifera HOM05D004913 ORTHO05D006150 3.5e-56 223.0 340 47.4
Manes.15G035800 Manihot esculenta HOM05D004913 ORTHO05D006150 7.9e-56 221.9 296 49.3
Sabra08G0122700 Salix brachista HOM05D004913 ORTHO05D006150 1.1e-54 218.0 335 46.6
Mapoly0010s0154 Marchantia polymorpha HOM05D004913 ORTHO05D006150 1.5e-54 217.6 252 59.9
PGR004G2231 Punica granatum HOM05D004913 ORTHO05D006150 1.5e-54 217.6 272 51.5
MBI11_g38514_MAGBIO Magnolia biondii HOM05D004913 ORTHO05D006150 1.6e-53 214.2 319 46.4
vmacro15402 Vaccinium macrocarpon HOM05D004913 ORTHO05D006150 3.7e-53 213.0 347 44.7
Potri.010G078500 Populus trichocarpa HOM05D004913 ORTHO05D006150 8.1e-53 211.8 315 47.6
CsaV3_3G012680 Cucumis sativus L. HOM05D004913 ORTHO05D006150 1.4e-52 211.1 351 44.4
CSS0009777 Camellia sinensis var. sinensis HOM05D004913 ORTHO05D003182 1.8e-52 210.7 358 45.3
Haze_11271 Corylus avellana HOM05D004913 ORTHO05D006150 5.3e-52 209.1 271 51.7
Oeu032612.1 Olea europaea HOM05D004913 ORTHO05D006150 5.3e-52 209.1 270 49.3
CSS0025455 Camellia sinensis var. sinensis HOM05D004913 ORTHO05D006150 6.9e-52 208.8 349 45.0
Duzib052G0554 Durio zibethinus HOM05D004913 ORTHO05D006150 6.9e-52 208.8 352 44.6
RcHm_v2.0_Chr5g0043971 Rosa chinensis HOM05D004913 ORTHO05D006150 9.0e-52 208.4 303 48.2
Thecc.04G244000 Theobroma cacao HOM05D004913 ORTHO05D006150 9.0e-52 208.4 352 44.9
AT1G04230 Arabidopsis thaliana HOM05D004913 ORTHO05D006150 1.2e-51 208.0 294 48.3
Gohir.D10G152000 Gossypium hirsutum HOM05D004913 ORTHO05D006150 1.2e-51 208.0 295 48.1
TAR636G2191 Trochodendron aralioides HOM05D004913 ORTHO05D006150 1.2e-51 208.0 296 50.3
Ciclev10005381m.g Citrus clementina HOM05D004913 ORTHO05D006150 1.5e-51 207.6 301 47.2
Cpa.g.sc58.23 Carica papaya HOM05D004913 ORTHO05D006150 2.6e-51 206.8 315 45.4
THA.LOC104826068 Tarenaya hassleriana HOM05D004913 ORTHO05D006150 2.6e-51 206.8 286 47.9
Manes.03G170000 Manihot esculenta HOM05D004913 ORTHO05D006150 5.8e-51 205.7 235 54.0
AL1G13830 Arabidopsis lyrata HOM05D004913 ORTHO05D006150 7.6e-51 205.3 294 48.0
QL06p015098 Quercus lobata HOM05D004913 ORTHO05D006150 7.6e-51 205.3 311 46.0
CiPaw.02G117800 Carya illinoinensis HOM05D004913 ORTHO05D006150 1.7e-50 204.1 335 46.0
VMungo0720G1087 Vigna mungo HOM05D004913 ORTHO05D006150 3.8e-50 203.0 338 43.8
ATR0665G449 Amborella trichopoda HOM05D004913 ORTHO05D006150 8.4e-50 201.8 362 43.9
Duzib151G0562 Durio zibethinus HOM05D004913 ORTHO05D006150 1.1e-49 201.4 308 46.4
Glyma.10G179800 Glycine max HOM05D004913 ORTHO05D006150 1.4e-49 201.1 271 46.9
FvH4_3g24470 Fragaria vesca HOM05D004913 ORTHO05D006150 1.9e-49 200.7 347 43.8
Gorai.011G170500 Gossypium raimondii HOM05D004913 ORTHO05D006150 2.5e-49 200.3 304 46.7
MD16G1206200 Malus domestica HOM05D004913 ORTHO05D006150 3.2e-49 199.9 279 47.0
Phvul.003G138434 Phaseolus vulgaris HOM05D004913 ORTHO05D006150 3.2e-49 199.9 338 44.1
Pp3c2_37690 Physcomitrium patens HOM05D004913 ORTHO05D006150 4.2e-49 199.5 335 45.1
Dinv44614 Davidia involucrata HOM05D004913 ORTHO05D006150 7.1e-49 198.7 319 45.8
Gohir.A10G114500 Gossypium hirsutum HOM05D004913 ORTHO05D006150 9.3e-49 198.4 304 46.4
MD13G1204100 Malus domestica HOM05D004913 ORTHO05D006150 1.6e-48 197.6 311 44.7
TWI09G0491 Tripterygium wilfordii HOM05D004913 ORTHO05D006150 1.6e-48 197.6 310 46.5
Eucgr.H03172 Eucalyptus grandis HOM05D004913 ORTHO05D006150 2.7e-48 196.8 327 45.3
CANSAT78G1520 Cannabis sativa HOM05D004913 ORTHO05D006150 3.5e-48 196.4 370 41.9
Gorai.006G070100 Gossypium raimondii HOM05D004913 ORTHO05D006150 3.5e-48 196.4 298 48.3
SGA_v2.0_scaffold101G29779 Striga asiatica HOM05D004913 ORTHO05D006150 4.6e-48 196.1 314 46.5
Sed0018032 Sechium edule HOM05D004913 ORTHO05D003182 7.9e-48 195.3 270 50.0
MSTRG.21888 Avicennia marina HOM05D004913 ORTHO05D006150 1.0e-47 194.9 311 45.7
Nn1g02556 Nelumbo nucifera HOM05D004913 ORTHO05D006150 1.0e-47 194.9 307 46.9
Sp2g08510 Schrenkiella parvula HOM05D004913 ORTHO05D006150 1.0e-47 194.9 301 46.2
C07p26280 Brassica napus HOM05D004913 ORTHO05D006150 1.3e-47 194.5 306 44.8
Glyma.20G210600 Glycine max HOM05D004913 ORTHO05D006150 1.3e-47 194.5 276 46.7
Carub.0001s0342 Capsella rubella HOM05D004913 ORTHO05D006150 2.3e-47 193.7 320 44.7
MELO3C006479.2 Cucumis melo HOM05D004913 ORTHO05D006150 3.0e-47 193.4 387 40.3
DCAR_030710 Daucus carota HOM05D004913 ORTHO05D006150 3.9e-47 193.0 311 45.3
Gohir.A09G057300 Gossypium hirsutum HOM05D004913 ORTHO05D006150 3.9e-47 193.0 298 47.7
CARHR003560 Cardamine hirsuta HOM05D004913 ORTHO05D006150 6.7e-47 192.2 309 45.0
Prupe.1G027200 Prunus persica HOM05D004913 ORTHO05D006150 6.7e-47 192.2 354 43.2
AL37U10050 Arabidopsis lyrata HOM05D004913 ORTHO05D006150 1.1e-46 191.4 296 45.3
BolC7t43157H Brassica oleracea HOM05D004913 ORTHO05D006150 1.1e-46 191.4 306 44.4
Rhsim02G0032600 Rhododendron simsii HOM05D004913 ORTHO05D006150 1.5e-46 191.0 311 43.7
Carub.0008s0491 Capsella rubella HOM05D004913 ORTHO05D006150 2.5e-46 190.3 301 45.5
Sed0027984 Sechium edule HOM05D004913 ORTHO05D006150 3.3e-46 189.9 313 44.7
Psat6g114920 Pisum sativum HOM05D004913 ORTHO05D006150 4.3e-46 189.5 234 50.4
arahy.Tifrunner.gnm1.ann1.9S1KBE Arachis hypogaea HOM05D004913 ORTHO05D006150 5.7e-46 189.1 273 46.9
Lsat_1_v5_gn_5_67500 Lactuca sativa HOM05D004913 ORTHO05D006150 9.6e-46 188.3 293 46.4
Lalb_Chr06g0168981 Lupinus albus HOM05D004913 ORTHO05D006150 1.3e-45 188.0 299 44.8
FAN11G1852 Fragaria x ananassa HOM05D004913 ORTHO05D006150 1.6e-45 187.6 343 42.6
AT5G43720 Arabidopsis thaliana HOM05D004913 ORTHO05D006150 2.8e-45 186.8 296 44.9
arahy.Tifrunner.gnm1.ann1.8JLR9N Arachis hypogaea HOM05D004913 ORTHO05D006150 4.8e-45 186.0 325 42.5
Lj5g0012164 Lotus japonicus HOM05D004913 ORTHO05D006150 1.1e-44 184.9 341 43.7
Ca_09877_v3 Cicer arietinum L. HOM05D004913 ORTHO05D006150 2.4e-44 183.7 271 47.2
PSO210G5612 Papaver somniferum HOM05D004913 ORTHO05D006150 2.4e-44 183.7 289 44.6
BolC2t10451H Brassica oleracea HOM05D004913 ORTHO05D006150 1.2e-43 181.4 350 39.7
CDE07G0872 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 1.5e-43 181.0 316 44.9
Lalb_Chr21g0311951 Lupinus albus HOM05D004913 ORTHO05D006150 2.0e-43 180.6 300 42.7
Medtr1g076290 Medicago truncatula HOM05D004913 ORTHO05D006150 7.6e-43 178.7 306 43.5
SEGI_31281 Sequoiadendron giganteum HOM05D004913 ORTHO05D006150 1.0e-42 178.3 219 50.2
HanXRQChr12g0381181 Helianthus annuus HOM05D004913 ORTHO05D006150 1.7e-42 177.6 341 41.6
PSO832G0934 Papaver somniferum HOM05D004913 ORTHO05D006150 2.2e-42 177.2 301 43.2
AUR62041210 Chenopodium quinoa HOM05D004913 ORTHO05D006150 2.9e-42 176.8 310 41.9
EL10Ac4g07493 Beta vulgaris HOM05D004913 ORTHO05D006150 1.9e-41 174.1 319 40.4
ECA233G3913 Erigeron canadensis HOM05D004913 ORTHO05D006150 1.9e-41 174.1 333 41.4
BcaC06g31682 Brassica carinata HOM05D004913 ORTHO05D006150 3.2e-41 173.3 308 43.2
CDE04G3353 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 3.2e-41 173.3 269 46.1
Gohir.D09G056500 Gossypium hirsutum HOM05D004913 ORTHO05D006150 4.2e-41 172.9 246 49.2
FAN25G1200 Fragaria x ananassa HOM05D004913 ORTHO05D006150 7.2e-41 172.2 266 45.5
FAN25G2316 Fragaria x ananassa HOM05D004913 ORTHO05D006150 7.2e-41 172.2 266 45.5
BraA06t27642Z Brassica rapa HOM05D004913 ORTHO05D006150 1.2e-40 171.4 306 42.5
Lj3A719T118 Lonicera japonica HOM05D004913 ORTHO05D006150 1.6e-40 171.0 314 41.4
CARHR179900 Cardamine hirsuta HOM05D004913 ORTHO05D006150 2.1e-40 170.6 224 49.1
A06p47740 Brassica napus HOM05D004913 ORTHO05D006150 2.7e-40 170.2 306 42.5
Thhalv10003245m.g Eutrema salsugineum HOM05D004913 ORTHO05D006150 7.9e-40 168.7 284 44.7
FAN16G1149 Fragaria x ananassa HOM05D004913 ORTHO05D006150 1.0e-39 168.3 245 48.6
Migut.N00232 Erythranthe guttata HOM05D004913 ORTHO05D006150 2.3e-39 167.2 353 39.7
TWI73G0814 Tripterygium wilfordii HOM05D004913 ORTHO05D006150 2.3e-39 167.2 310 42.6
FAN21G0973 Fragaria x ananassa HOM05D004913 ORTHO05D006150 8.7e-39 165.2 266 44.4
Aa31LG5G3520 Aethionema arabicum HOM05D004913 ORTHO05D006150 1.5e-38 164.5 209 50.2
BcaC03g16589 Brassica carinata HOM05D004913 ORTHO05D006150 2.2e-37 160.6 216 48.1
C02p44080 Brassica napus HOM05D004913 ORTHO05D006150 2.2e-37 160.6 216 48.1
Cc03_g04640 Coffea canephora HOM05D004913 ORTHO05D006150 3.7e-37 159.8 201 51.7
A02p27910 Brassica napus HOM05D004913 ORTHO05D006150 1.1e-36 158.3 321 40.8
BraA02t07829Z Brassica rapa HOM05D004913 ORTHO05D006150 1.1e-36 158.3 321 40.8
AUR62040390 Chenopodium quinoa HOM05D004913 ORTHO05D006150 1.8e-36 157.5 235 46.4
Actinidia05471 Actinidia chinensis HOM05D004913 ORTHO05D006150 2.4e-36 157.1 279 45.2
Aqoxy2G03527 Aquilegia oxysepala HOM05D004913 ORTHO05D006150 9.0e-36 155.2 286 42.0
SalBow3G1711 Salvia bowleyana HOM05D004913 ORTHO05D006150 1.2e-32 144.8 226 44.2
HPP92_014140 Vanilla planifolia HOM05D004913 ORTHO05D006150 1.6e-32 144.4 276 40.9
unitig_0.g131 Utricularia gibba HOM05D004913 ORTHO05D006150 2.7e-32 143.7 212 44.3
Migut.G00417 Erythranthe guttata HOM05D004913 ORTHO05D006150 7.9e-32 142.1 319 39.5
Hund17874 Selenicereus undatus HOM05D004913 ORTHO05D006150 7.9e-32 142.1 239 44.4
Sc13g0004930 Simmondsia chinensis HOM05D004913 ORTHO05D006150 2.3e-31 140.6 156 54.5
PGSC0003DMG400006092 Solanum tuberosum HOM05D004913 ORTHO05D006150 6.7e-31 139.0 351 35.6
CAN.G626.13 Capsicum annuum HOM05D004913 ORTHO05D006150 8.8e-31 138.7 350 35.7
Solyc09g083270.4 Solanum lycopersicum HOM05D004913 ORTHO05D006150 8.8e-31 138.7 351 35.6
Sopen09g032190 Solanum pennellii HOM05D004913 ORTHO05D006150 8.8e-31 138.7 351 35.6
PSO238G0009 Papaver somniferum HOM05D004913 ORTHO05D006150 2.2e-29 134.0 193 46.6
CDE06G2453 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 6.9e-28 129.0 244 41.8
CDE07G2030 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 6.9e-28 129.0 321 37.7
COL.COLO4_15768 Corchorus olitorius HOM05D000979 ORTHO05D003182 6.9e-28 129.0 310 35.5
Nitab4.5_0000525g0090 Nicotiana tabacum HOM05D004913 ORTHO05D006150 1.2e-27 128.3 361 36.3
AL8G16560 Arabidopsis lyrata HOM05D004913 ORTHO05D006150 1.5e-27 127.9 173 48.0
Nitab4.5_0004203g0050 Nicotiana tabacum HOM05D004913 ORTHO05D006150 5.9e-27 125.9 358 34.6
Peaxi162Scf01416g00120 Petunia axillaris HOM05D004913 ORTHO05D006150 7.7e-27 125.6 355 33.5
PSO210G2862 Papaver somniferum HOM05D004913 ORTHO05D006150 2.9e-26 123.6 262 38.5
Zm00001eb212900 Zea mays HOM05D004913 ORTHO05D006150 1.9e-25 120.9 319 36.7
Os03g0797700 Oryza sativa ssp. japonica HOM05D004913 ORTHO05D006150 2.1e-24 117.5 257 38.5
SMO361G0546 Selaginella moellendorffii HOM05D004913 ORTHO05D006150 2.7e-24 117.1 77 83.1
BcaC06g34634 Brassica carinata HOM05D004913 ORTHO05D006150 6.1e-24 115.9 156 48.7
CBR_g525 Chara braunii HOM05D004913 ORTHO05D006150 5.3e-20 102.8 139 46.0
ClCG05G004680 Citrullus lanatus HOM05D000979 ORTHO05D003182 2.0e-19 100.9 140 50.0
SHI00581 Sapria himalayana HOM05D004913 ORTHO05D006150 1.3e-18 98.2 320 32.2
Ah.13g071540 Amaranthus hybridus HOM05D004913 ORTHO05D006150 5.0e-18 96.3 177 42.9
SMO347G0406 Selaginella moellendorffii HOM05D004913 ORTHO05D006150 1.2e-14 85.1 166 38.6
Zm00001eb034960 Zea mays HOM05D004913 ORTHO05D006150 9.1e-12 75.5 93 52.7
SMO358G0458 Selaginella moellendorffii HOM05D004913 ORTHO05D377916 4.5e-11 73.2 47 85.1
Ah.13g071550 Amaranthus hybridus HOM05D004913 ORTHO05D006150 5.9e-11 72.8 98 44.9
BcaC06g34635 Brassica carinata HOM05D004913 ORTHO05D006150 1.1e-09 68.6 131 40.5
TAR365G1176 Trochodendron aralioides HOM05D004913 ORTHO05D006150 1.5e-09 68.2 187 35.8
MCO11G351 Micromonas commoda HOM05D004913 ORTHO05D006150 6.8e-07 59.3 179 31.8


User provided reference genes

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