Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO358G0132 Selaginella moellendorffii HOM05D004374 ORTHO05D005430 1.5e-136 489.6 251 100.0
Pp3c16_3150 Physcomitrium patens HOM05D004374 ORTHO05D005430 2.7e-34 149.8 207 41.1
Mapoly0001s0311 Marchantia polymorpha HOM05D004374 ORTHO05D005430 4.4e-32 142.5 227 35.2
AagrBONN_evm.TU.Sc2ySwM_228.3625 Anthoceros agrestis HOM05D004374 ORTHO05D005430 3.1e-30 136.3 182 41.2
SEGI_33846 Sequoiadendron giganteum HOM05D004374 ORTHO05D005430 1.5e-24 117.5 215 34.0
ATR0307G110 Amborella trichopoda HOM05D004374 ORTHO05D005430 8.6e-20 101.7 248 30.6
ClCG11G003340 Citrullus lanatus HOM05D004374 ORTHO05D005430 5.6e-19 99.0 215 31.6
Aqoxy4G00722 Aquilegia oxysepala HOM05D004374 ORTHO05D005430 7.3e-19 98.6 226 31.0
Cc06_g08080 Coffea canephora HOM05D004374 ORTHO05D005430 2.1e-18 97.1 199 30.7
TWI34G1386 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 3.6e-18 96.3 244 27.9
CsaV3_2G003190 Cucumis sativus L. HOM05D002754 ORTHO05D003271 6.1e-18 95.5 215 31.6
Prupe.1G493600 Prunus persica HOM05D004374 ORTHO05D005430 6.1e-18 95.5 244 29.1
Cpa.g.sc46.39 Carica papaya HOM05D004374 ORTHO05D005430 8.0e-18 95.1 232 31.0
MD05G1013300 Malus domestica HOM05D004374 ORTHO05D005430 8.0e-18 95.1 203 31.0
RcHm_v2.0_Chr2g0138971 Rosa chinensis HOM05D004374 ORTHO05D005430 1.4e-17 94.4 243 32.1
Lalb_Chr12g0197301 Lupinus albus HOM05D004374 ORTHO05D005430 1.8e-17 94.0 201 33.3
arahy.Tifrunner.gnm1.ann1.RD7K84 Arachis hypogaea HOM05D004374 ORTHO05D005430 2.3e-17 93.6 226 32.7
MELO3C004466.2 Cucumis melo HOM05D004374 ORTHO05D005430 2.3e-17 93.6 200 33.0
Ciclev10002076m.g Citrus clementina HOM05D004374 ORTHO05D005430 3.0e-17 93.2 222 30.2
arahy.Tifrunner.gnm1.ann1.QKGT17 Arachis hypogaea HOM05D004374 ORTHO05D005430 4.0e-17 92.8 226 32.3
TAR626G1960 Trochodendron aralioides HOM05D004374 ORTHO05D005430 5.2e-17 92.4 201 32.8
Dinv41475 Davidia involucrata HOM05D004374 ORTHO05D005430 6.8e-17 92.0 196 32.7
FvH4_6g31820 Fragaria vesca HOM05D004374 ORTHO05D005430 8.9e-17 91.7 243 29.6
FAN14G1328 Fragaria x ananassa HOM05D004374 ORTHO05D005430 8.9e-17 91.7 243 29.6
Rhsim01G0061800 Rhododendron simsii HOM05D004374 ORTHO05D005430 8.9e-17 91.7 196 32.7
GSVIVG01015588001 Vitis vinifera HOM05D004374 ORTHO05D005430 8.9e-17 91.7 210 31.0
QL02p089838 Quercus lobata HOM05D004374 ORTHO05D005430 1.5e-16 90.9 203 31.5
TWI34G0112 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 1.5e-16 90.9 244 27.5
AUR62011174 Chenopodium quinoa HOM05D004374 ORTHO05D005430 2.0e-16 90.5 202 29.7
AUR62025401 Chenopodium quinoa HOM05D004374 ORTHO05D005430 2.0e-16 90.5 202 30.2
Sed0026824 Sechium edule HOM05D004374 ORTHO05D005430 2.0e-16 90.5 200 30.5
Glyma.13G159900 Glycine max HOM05D004374 ORTHO05D005430 2.6e-16 90.1 216 33.3
Sc18g0000370 Simmondsia chinensis HOM05D004374 ORTHO05D005430 2.6e-16 90.1 224 30.8
Ciclev10032301m.g Citrus clementina HOM05D004374 ORTHO05D005430 4.4e-16 89.4 216 30.1
FAN09G4040 Fragaria x ananassa HOM05D004374 ORTHO05D005430 7.5e-16 88.6 240 30.4
EL10Ac8g18718 Beta vulgaris HOM05D004374 ORTHO05D005430 9.8e-16 88.2 204 30.4
CANSAT11G1308 Cannabis sativa HOM05D004374 ORTHO05D005430 9.8e-16 88.2 249 28.5
FAN02G2909 Fragaria x ananassa HOM05D004374 ORTHO05D005430 9.8e-16 88.2 243 28.8
AL5G21410 Arabidopsis lyrata HOM05D004374 ORTHO05D005430 1.3e-15 87.8 203 30.5
CiPaw.05G118700 Carya illinoinensis HOM05D004374 ORTHO05D005430 1.3e-15 87.8 170 34.7
Nn8g39541 Nelumbo nucifera HOM05D004374 ORTHO05D005430 1.7e-15 87.4 217 28.1
Thecc.09G131900 Theobroma cacao HOM05D004374 ORTHO05D005430 2.2e-15 87.0 237 29.1
FAN05G4736 Fragaria x ananassa HOM05D004374 ORTHO05D005430 2.9e-15 86.7 240 30.0
Lalb_Chr13g0301591 Lupinus albus HOM05D004374 ORTHO05D005430 2.9e-15 86.7 243 29.6
AUR62008844 Chenopodium quinoa HOM05D004374 ORTHO05D005430 4.9e-15 85.9 206 28.6
Eucgr.C01384 Eucalyptus grandis HOM05D004374 ORTHO05D005430 4.9e-15 85.9 186 29.6
Manes.06G047300 Manihot esculenta HOM05D004374 ORTHO05D005430 4.9e-15 85.9 232 28.4
Atru.chr12.84 Acer truncatum HOM05D004374 ORTHO05D005430 8.3e-15 85.1 236 29.2
Cfa008808 Carpinus fangiana HOM05D004374 ORTHO05D005430 8.3e-15 85.1 204 29.9
Thhalv10010555m.g Eutrema salsugineum HOM05D004374 ORTHO05D005430 1.1e-14 84.7 208 28.8
Hma1.2p1_1220F.1_g268070 Hydrangea macrophylla HOM05D004374 ORTHO05D005430 1.1e-14 84.7 209 30.1
PSO478G4198 Papaver somniferum HOM05D004374 ORTHO05D005430 1.1e-14 84.7 207 30.4
Psat4g038960 Pisum sativum HOM05D004374 ORTHO05D005430 1.1e-14 84.7 239 28.5
PGR042G2992 Punica granatum HOM05D004374 ORTHO05D005430 1.1e-14 84.7 227 27.8
Migut.K00426 Erythranthe guttata HOM05D004374 ORTHO05D005430 1.4e-14 84.3 200 31.0
SalBow1G4424 Salvia bowleyana HOM05D004374 ORTHO05D005430 1.8e-14 84.0 196 31.1
Gohir.D05G015500 Gossypium hirsutum HOM05D004374 ORTHO05D005430 2.4e-14 83.6 238 27.3
SGA_v2.0_scaffold154G37188 Striga asiatica HOM05D004374 ORTHO05D005430 2.4e-14 83.6 200 31.0
HPP92_020472 Vanilla planifolia HOM05D004374 ORTHO05D005430 2.4e-14 83.6 248 29.4
Ca_06940_v3 Cicer arietinum L. HOM05D004374 ORTHO05D005430 3.2e-14 83.2 238 29.4
Hma1.2p1_0343F.1_g130960 Hydrangea macrophylla HOM05D004374 ORTHO05D005430 3.2e-14 83.2 209 30.1
Lj4g0025213 Lotus japonicus HOM05D004374 ORTHO05D005430 3.2e-14 83.2 232 29.3
Zm00001eb288690 Zea mays HOM05D004374 ORTHO05D005430 3.2e-14 83.2 196 27.0
Medtr4g115320 Medicago truncatula HOM05D004374 ORTHO05D005430 4.1e-14 82.8 237 28.3
AT3G53270 Arabidopsis thaliana HOM05D004374 ORTHO05D005430 5.4e-14 82.4 203 29.6
Gorai.009G015600 Gossypium raimondii HOM05D004374 ORTHO05D005430 5.4e-14 82.4 238 27.3
HanXRQChr06g0168691 Helianthus annuus HOM05D004374 ORTHO05D005430 5.4e-14 82.4 197 29.9
Sp5g09070 Schrenkiella parvula HOM05D004374 ORTHO05D005430 5.4e-14 82.4 214 28.0
Zm00001eb030790 Zea mays HOM05D004374 ORTHO05D005430 5.4e-14 82.4 196 27.0
Zm00001eb030830 Zea mays HOM05D004374 ORTHO05D005430 5.4e-14 82.4 196 27.0
Peaxi162Scf00088g01332 Petunia axillaris HOM05D004374 ORTHO05D005430 7.0e-14 82.0 196 29.1
SEGI_36985 Sequoiadendron giganteum HOM05D004374 ORTHO05D005430 1.2e-13 81.3 215 30.7
HPP92_026160 Vanilla planifolia HOM05D004374 ORTHO05D005430 1.2e-13 81.3 247 28.7
SGA_v2.0_scaffold138G35279 Striga asiatica HOM05D004374 ORTHO05D005430 1.6e-13 80.9 165 33.9
MSTRG.26430 Avicennia marina HOM05D004374 ORTHO05D005430 2.0e-13 80.5 196 29.6
BcaB02g07796 Brassica carinata HOM05D004374 ORTHO05D005430 2.7e-13 80.1 207 27.5
Haze_11824 Corylus avellana HOM05D004374 ORTHO05D005430 2.7e-13 80.1 159 36.5
Potri.006G065800 Populus trichocarpa HOM05D004374 ORTHO05D005430 2.7e-13 80.1 237 27.8
AL5G34180 Arabidopsis lyrata HOM05D004374 ORTHO05D005430 3.5e-13 79.7 225 29.3
Carub.0005s1981 Capsella rubella HOM05D004374 ORTHO05D005430 3.5e-13 79.7 212 26.9
Duzib168G1544 Durio zibethinus HOM05D004374 ORTHO05D005430 3.5e-13 79.7 243 26.7
Phvul.003G168700 Phaseolus vulgaris HOM05D004374 ORTHO05D005430 3.5e-13 79.7 215 31.6
BolC6t37295H Brassica oleracea HOM05D004374 ORTHO05D005430 4.6e-13 79.3 207 27.5
PSO384G0227 Papaver somniferum HOM05D004374 ORTHO05D005430 4.6e-13 79.3 189 29.6
Sopen07g003820 Solanum pennellii HOM05D004374 ORTHO05D005430 4.6e-13 79.3 204 28.9
C06p21110 Brassica napus HOM05D004374 ORTHO05D005430 5.9e-13 79.0 207 27.5
THA.LOC104826552 Tarenaya hassleriana HOM05D004374 ORTHO05D005430 5.9e-13 79.0 201 26.9
ECA240G2062 Erigeron canadensis HOM05D004374 ORTHO05D005430 7.8e-13 78.6 227 29.5
CBR_g54313 Chara braunii HOM05D004374 ORTHO05D005430 1.0e-12 78.2 262 27.9
VMungo1215G2312 Vigna mungo HOM05D004374 ORTHO05D005430 1.0e-12 78.2 190 31.6
TAR383G0672 Trochodendron aralioides HOM05D004374 ORTHO05D005430 1.3e-12 77.8 224 29.0
Dinv36480 Davidia involucrata HOM05D004374 ORTHO05D005430 1.7e-12 77.4 196 31.1
Nitab4.5_0005465g0010 Nicotiana tabacum HOM05D004374 ORTHO05D005430 1.7e-12 77.4 162 32.1
Solyc07g007940.3 Solanum lycopersicum HOM05D004374 ORTHO05D005430 1.7e-12 77.4 204 28.4
A07p21500 Brassica napus HOM05D004374 ORTHO05D005430 2.3e-12 77.0 207 27.1
BraA07t29837Z Brassica rapa HOM05D004374 ORTHO05D005430 3.0e-12 76.6 207 27.5
Lsat_1_v5_gn_7_43761 Lactuca sativa HOM05D004374 ORTHO05D005430 3.0e-12 76.6 197 27.4
Lj5A680G20 Lonicera japonica HOM05D004374 ORTHO05D005430 3.9e-12 76.3 173 30.6
Lj7A483G16 Lonicera japonica HOM05D004374 ORTHO05D005430 3.9e-12 76.3 192 29.7
Nitab4.5_0002008g0060 Nicotiana tabacum HOM05D004374 ORTHO05D005430 3.9e-12 76.3 197 28.4
Sabra06G0048000 Salix brachista HOM05D004374 ORTHO05D005430 3.9e-12 76.3 248 27.8
vmacro15378 Vaccinium macrocarpon HOM05D004374 ORTHO05D005430 5.0e-12 75.9 204 28.4
Nitab4.5_0009218g0020 Nicotiana tabacum HOM05D004374 ORTHO05D005430 2.5e-11 73.6 197 29.9
TPR.G24785 Trifolium pratense HOM05D004374 ORTHO05D005430 2.5e-11 73.6 226 29.2
Lj3g0009396 Lotus japonicus HOM05D004374 ORTHO05D005430 3.3e-11 73.2 217 28.6
Os10g0493800 Oryza sativa ssp. japonica HOM05D004374 ORTHO05D005430 4.3e-11 72.8 178 28.1
Sp1g13120 Schrenkiella parvula HOM05D004374 ORTHO05D005430 7.3e-11 72.0 219 26.9
Aa31LG9G14420 Aethionema arabicum HOM05D004374 ORTHO05D005430 2.8e-10 70.1 235 24.7
Carub.0001s3232 Capsella rubella HOM05D004374 ORTHO05D005430 6.2e-10 68.9 106 39.6
Lj3g0021552 Lotus japonicus HOM05D004374 ORTHO05D005430 8.0e-10 68.6 212 27.8
MBI04_g39649_MAGBIO Magnolia biondii HOM05D004374 ORTHO05D005430 1.0e-09 68.2 189 30.7
vmacro07719 Vaccinium macrocarpon HOM05D004374 ORTHO05D005430 2.3e-09 67.0 93 43.0
COL.COLO4_35152 Corchorus olitorius HOM05D004374 ORTHO05D005430 3.1e-09 66.6 242 25.2
Medtr3g113180 Medicago truncatula HOM05D004374 ORTHO05D005430 5.2e-09 65.9 237 27.4
DCAR_017779 Daucus carota HOM05D004374 ORTHO05D005430 6.8e-09 65.5 180 28.3
Nitab4.5_0000245g0220 Nicotiana tabacum HOM05D004374 ORTHO05D005430 1.2e-08 64.7 101 40.6
CAN.G1963.3 Capsicum annuum HOM05D004374 ORTHO05D005430 4.4e-08 62.8 150 28.0
Thhalv10000991m.g Eutrema salsugineum HOM05D004374 ORTHO05D005430 4.4e-08 62.8 201 27.4
AUR62013310 Chenopodium quinoa HOM05D004374 ORTHO05D005430 5.8e-08 62.4 130 30.0
Gohir.A05G014400 Gossypium hirsutum HOM05D004374 ORTHO05D005430 2.9e-07 60.1 173 26.6
Oeu032455.1 Olea europaea HOM05D004374 ORTHO05D005430 2.9e-07 60.1 96 36.5
unitig_0.g2039 Utricularia gibba HOM05D004374 ORTHO05D005430 1.1e-06 58.2 110 33.6
Potri.004G126720 Populus trichocarpa HOM05D004374 ORTHO05D005430 2.4e-06 57.0 141 28.4
arahy.Tifrunner.gnm1.ann1.9N6VAH Arachis hypogaea HOM05D004374 ORTHO05D005430 5.4e-06 55.8 132 28.8


User provided reference genes

Program Settings