Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO356G0059 Selaginella moellendorffii HOM05D004333 ORTHO05D005363 0.0e+00 2330.1 1205 100.0
Mapoly0143s0007 Marchantia polymorpha HOM05D004333 ORTHO05D005363 5.5e-197 692.6 827 45.2
Pp3c1_3140 Physcomitrium patens HOM05D004333 ORTHO05D005363 4.3e-186 656.4 781 45.2
FvH4_7g32380 Fragaria vesca HOM05D004333 ORTHO05D005363 1.8e-184 651.0 796 44.1
PGR142G3828 Punica granatum HOM05D004333 ORTHO05D005363 2.2e-182 644.0 786 43.8
arahy.Tifrunner.gnm1.ann1.SMAV3X Arachis hypogaea HOM05D004333 ORTHO05D005363 6.5e-182 642.5 802 44.0
Lalb_Chr08g0240011 Lupinus albus HOM05D004333 ORTHO05D005363 6.5e-182 642.5 793 43.6
Medtr3g091940 Medicago truncatula HOM05D004333 ORTHO05D005363 6.5e-182 642.5 791 43.7
CANSAT21G1061 Cannabis sativa HOM05D004333 ORTHO05D005363 1.1e-181 641.7 811 42.8
Sabra15G0006500 Salix brachista HOM05D004333 ORTHO05D005363 1.4e-181 641.3 786 43.3
DCAR_020346 Daucus carota HOM05D004333 ORTHO05D005363 1.9e-181 641.0 779 43.6
Potri.015G008500 Populus trichocarpa HOM05D004333 ORTHO05D005363 2.5e-181 640.6 809 42.8
Lj1g0003347 Lotus japonicus HOM05D004333 ORTHO05D005363 3.2e-181 640.2 793 43.3
Prupe.2G315300 Prunus persica HOM05D004333 ORTHO05D005363 7.2e-181 639.0 796 43.5
ATR0697G293 Amborella trichopoda HOM05D004333 ORTHO05D005363 1.2e-180 638.3 832 41.8
Glyma.04G232700 Glycine max HOM05D004333 ORTHO05D005363 1.6e-180 637.9 783 43.7
AagrBONN_evm.TU.Sc2ySwM_362.1567 Anthoceros agrestis HOM05D004333 ORTHO05D005363 2.7e-180 637.1 811 42.5
TPR.G33633 Trifolium pratense HOM05D004333 ORTHO05D005363 3.6e-180 636.7 791 43.2
arahy.Tifrunner.gnm1.ann1.F5KWPZ Arachis hypogaea HOM05D004333 ORTHO05D005363 1.8e-179 634.4 795 43.9
MD07G1295800 Malus domestica HOM05D004333 ORTHO05D005363 2.3e-179 634.0 789 43.2
TAR633G0098 Trochodendron aralioides HOM05D004333 ORTHO05D005363 5.1e-179 632.9 791 43.1
C07p43390 Brassica napus HOM05D004333 ORTHO05D005363 6.7e-179 632.5 793 43.1
FAN06G4186 Fragaria x ananassa HOM05D004333 ORTHO05D005363 6.7e-179 632.5 830 42.2
Hund21026 Selenicereus undatus HOM05D004333 ORTHO05D005363 8.7e-179 632.1 819 43.5
Sabra12G0012900 Salix brachista HOM05D004333 ORTHO05D005363 1.1e-178 631.7 809 42.3
AL6G35880 Arabidopsis lyrata HOM05D004333 ORTHO05D005363 1.9e-178 630.9 791 43.1
FAN01G1860 Fragaria x ananassa HOM05D004333 ORTHO05D005363 1.9e-178 630.9 830 42.0
FAN10G0319 Fragaria x ananassa HOM05D004333 ORTHO05D005363 1.9e-178 630.9 830 42.0
MD01G1225300 Malus domestica HOM05D004333 ORTHO05D005363 1.9e-178 630.9 789 42.7
Dinv32109 Davidia involucrata HOM05D004333 ORTHO05D005363 2.5e-178 630.6 819 42.5
Ah.01g018970 Amaranthus hybridus HOM05D004333 ORTHO05D005363 5.7e-178 629.4 801 42.7
FAN10G1078 Fragaria x ananassa HOM05D004333 ORTHO05D005363 5.7e-178 629.4 830 41.9
Thhalv10003502m.g Eutrema salsugineum HOM05D004333 ORTHO05D005363 7.4e-178 629.0 790 42.7
Manes.01G037200 Manihot esculenta HOM05D004333 ORTHO05D005363 7.4e-178 629.0 864 41.0
FAN20G1934 Fragaria x ananassa HOM05D004333 ORTHO05D005363 9.7e-178 628.6 830 41.9
RcHm_v2.0_Chr1g0381961 Rosa chinensis HOM05D004333 ORTHO05D005363 9.7e-178 628.6 796 43.1
Psat5g074840 Pisum sativum HOM05D004333 ORTHO05D005363 1.6e-177 627.9 783 43.3
AT5G24350 Arabidopsis thaliana HOM05D004333 ORTHO05D005363 2.2e-177 627.5 791 43.0
Cc02_g01170 Coffea canephora HOM05D004333 ORTHO05D005363 2.2e-177 627.5 811 41.3
Potri.012G020000 Populus trichocarpa HOM05D004333 ORTHO05D005363 2.2e-177 627.5 830 41.4
CiPaw.05G200800 Carya illinoinensis HOM05D004333 ORTHO05D005363 3.7e-177 626.7 807 43.4
Ca_16734_v3 Cicer arietinum L. HOM05D004333 ORTHO05D005363 3.7e-177 626.7 791 42.7
Glyma.06G132300 Glycine max HOM05D004333 ORTHO05D005363 4.8e-177 626.3 783 42.9
Sopen03g022440 Solanum pennellii HOM05D004333 ORTHO05D005363 4.8e-177 626.3 786 43.1
FAN03G1314 Fragaria x ananassa HOM05D004333 ORTHO05D005363 8.2e-177 625.5 830 41.8
Haze_00260 Corylus avellana HOM05D004333 ORTHO05D005363 1.1e-176 625.2 833 42.3
PSO063G3257 Papaver somniferum HOM05D004333 ORTHO05D005363 1.1e-176 625.2 784 42.7
vmacro06413 Vaccinium macrocarpon HOM05D004333 ORTHO05D005363 4.1e-176 623.2 805 42.1
CARHR189090 Cardamine hirsuta HOM05D004333 ORTHO05D005363 5.3e-176 622.9 791 42.9
CDE02G3740 Ceratophyllum demersum HOM05D004333 ORTHO05D005363 5.3e-176 622.9 784 41.6
Sc19g0000760 Simmondsia chinensis HOM05D004333 ORTHO05D005363 6.9e-176 622.5 796 43.2
SGA_v2.0_scaffold18G08437 Striga asiatica HOM05D004333 ORTHO05D005363 1.2e-175 621.7 795 42.3
Phvul.009G048100 Phaseolus vulgaris HOM05D004333 ORTHO05D005363 4.5e-175 619.8 785 42.3
MBI06_g06689_MAGBIO Magnolia biondii HOM05D004333 ORTHO05D005363 1.7e-174 617.8 809 42.2
Nitab4.5_0010367g0010 Nicotiana tabacum HOM05D004333 ORTHO05D005363 2.2e-174 617.5 790 42.4
Lj1C1024G7 Lonicera japonica HOM05D004333 ORTHO05D005363 2.9e-174 617.1 819 41.3
Nn7g38041 Nelumbo nucifera HOM05D004333 ORTHO05D005363 2.9e-174 617.1 795 41.9
Migut.F00177 Erythranthe guttata HOM05D004333 ORTHO05D005363 6.5e-174 615.9 820 40.5
Nitab4.5_0008197g0020 Nicotiana tabacum HOM05D004333 ORTHO05D005363 1.1e-173 615.1 793 42.0
Sp2g22970 Schrenkiella parvula HOM05D004333 ORTHO05D005363 1.1e-173 615.1 795 42.1
A06p35170 Brassica napus HOM05D004333 ORTHO05D005363 1.9e-173 614.4 793 42.0
BolC7t44866H Brassica oleracea HOM05D004333 ORTHO05D005363 1.9e-173 614.4 820 41.6
Gohir.A09G185800 Gossypium hirsutum HOM05D004333 ORTHO05D005363 1.9e-173 614.4 788 42.8
Actinidia08674 Actinidia chinensis HOM05D004333 ORTHO05D005363 3.2e-173 613.6 799 41.4
Rhsim03G0212200 Rhododendron simsii HOM05D004333 ORTHO05D005363 3.2e-173 613.6 787 42.4
QL11p010725 Quercus lobata HOM05D004333 ORTHO05D005363 4.2e-173 613.2 831 40.7
AUR62010404 Chenopodium quinoa HOM05D004333 ORTHO05D005363 5.5e-173 612.8 783 42.8
EL10Ac9g21652 Beta vulgaris HOM05D004333 ORTHO05D005363 7.2e-173 612.5 796 41.8
TWI39G1232 Tripterygium wilfordii HOM05D004333 ORTHO05D005363 9.4e-173 612.1 820 42.1
AUR62016813 Chenopodium quinoa HOM05D004333 ORTHO05D005363 2.1e-172 610.9 883 40.9
CsaV3_1G044960 Cucumis sativus L. HOM05D004333 ORTHO05D005363 2.1e-172 610.9 813 40.6
HanXRQChr04g0107121 Helianthus annuus HOM05D004333 ORTHO05D005363 2.1e-172 610.9 795 41.0
Gorai.006G202800 Gossypium raimondii HOM05D004333 ORTHO05D005363 6.1e-172 609.4 867 40.6
MSTRG.27005 Avicennia marina HOM05D004333 ORTHO05D005363 1.0e-171 608.6 802 41.3
MELO3C010103.2 Cucumis melo HOM05D004333 ORTHO05D005363 1.0e-171 608.6 813 40.7
Cfa016195 Carpinus fangiana HOM05D004333 ORTHO05D005363 1.4e-171 608.2 843 41.4
Lsat_1_v5_gn_9_49400 Lactuca sativa HOM05D004333 ORTHO05D005363 2.3e-171 607.4 810 40.9
ClCG03G011440 Citrullus lanatus HOM05D004333 ORTHO05D005363 2.0e-170 604.4 799 40.9
Gohir.D09G180800 Gossypium hirsutum HOM05D004333 ORTHO05D005363 2.6e-170 604.0 867 40.1
Aa31LG11G3630 Aethionema arabicum HOM05D004333 ORTHO05D005363 5.7e-170 602.8 848 40.9
Aqoxy5G04259 Aquilegia oxysepala HOM05D004333 ORTHO05D005363 7.4e-170 602.4 878 39.7
CSS0015753 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 6.3e-169 599.4 770 42.5
CSS0025528 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 8.2e-169 599.0 770 42.3
Peaxi162Scf00740g00426 Petunia axillaris HOM05D004333 ORTHO05D005363 4.1e-168 596.7 790 41.3
Zm00001eb359130 Zea mays HOM05D004333 ORTHO05D005363 4.1e-168 596.7 794 42.9
BraA06t26437Z Brassica rapa HOM05D004333 ORTHO05D005363 5.3e-168 596.3 814 40.3
HPP92_002817 Vanilla planifolia HOM05D004333 ORTHO05D005363 1.2e-167 595.1 816 41.4
THA.LOC104798907 Tarenaya hassleriana HOM05D004333 ORTHO05D005363 4.2e-165 586.6 791 40.7
BcaNung01227 Brassica carinata HOM05D004333 ORTHO05D005363 1.2e-164 585.1 791 41.2
Atru.chr12.2311 Acer truncatum HOM05D004333 ORTHO05D005363 2.1e-164 584.3 876 38.7
Gorai.008G266500 Gossypium raimondii HOM05D004333 ORTHO05D005363 3.6e-164 583.6 788 41.2
Gohir.D12G248500 Gossypium hirsutum HOM05D004333 ORTHO05D005363 5.2e-163 579.7 788 41.1
Sed0018682 Sechium edule HOM05D004333 ORTHO05D005363 6.7e-163 579.3 793 39.7
Gohir.A12G247800 Gossypium hirsutum HOM05D004333 ORTHO05D005363 8.8e-163 578.9 788 41.0
Thecc.03G204400 Theobroma cacao HOM05D004333 ORTHO05D005363 7.4e-162 575.9 811 40.3
GSVIVG01038603001 Vitis vinifera HOM05D004333 ORTHO05D005363 7.4e-162 575.9 897 38.6
SalBow4G2088 Salvia bowleyana HOM05D004333 ORTHO05D005363 8.0e-156 555.8 768 40.5
unitig_0.g2452 Utricularia gibba HOM05D004333 ORTHO05D005363 9.4e-149 532.3 695 40.1
CBR_g48777 Chara braunii HOM05D004333 ORTHO05D005363 2.2e-145 521.2 836 36.4
Ciclev10000006m.g Citrus clementina HOM05D004333 ORTHO05D005363 6.3e-145 519.6 819 37.7
ECA232G2446 Erigeron canadensis HOM05D004333 ORTHO05D005363 1.6e-143 515.0 817 36.0
Duzib068G0008 Durio zibethinus HOM05D004333 ORTHO05D005363 1.5e-141 508.4 713 40.3
COL.COLO4_16822 Corchorus olitorius HOM05D004333 ORTHO05D005363 4.7e-132 476.9 785 36.4
Eucgr.D00250 Eucalyptus grandis HOM05D004333 ORTHO05D005363 4.7e-132 476.9 736 38.5
Carub.0006s2218 Capsella rubella HOM05D004333 ORTHO05D005363 1.8e-115 421.8 488 44.9
Psat0s2221g0080 Pisum sativum HOM05D004333 ORTHO05D005363 2.7e-111 407.9 599 39.4
Aa31LG11G3970 Aethionema arabicum HOM05D004333 ORTHO05D005363 5.6e-101 373.6 581 37.5
VMungo1309G3147 Vigna mungo HOM05D004333 ORTHO05D005363 9.6e-101 372.9 335 53.4
CAN.G481.56 Capsicum annuum HOM05D004333 ORTHO05D005363 1.6e-100 372.1 617 36.3
SEGI_24760 Sequoiadendron giganteum HOM05D004333 ORTHO05D005363 9.6e-77 293.1 249 55.8
SEGI_07013 Sequoiadendron giganteum HOM05D004333 ORTHO05D000001 1.4e-75 289.3 427 38.9
Solyc03g082680.4 Solanum lycopersicum HOM05D004333 ORTHO05D005363 2.0e-74 285.4 249 53.8
VMungo1309G1648 Vigna mungo HOM05D004333 ORTHO05D005363 2.0e-74 285.4 444 38.3
Psat1g135480 Pisum sativum HOM05D004333 ORTHO05D005363 6.7e-70 270.4 257 51.0
Cre09.g415400 Chlamydomonas reinhardtii HOM05D004333 ORTHO05D005363 6.5e-57 227.3 1017 24.5
Cpa.g.c45444 Carica papaya HOM05D004333 ORTHO05D005363 8.5e-57 226.9 311 41.2
Carub.0006s2217 Capsella rubella HOM05D004333 ORTHO05D005363 2.9e-49 201.8 289 39.8
SHI08285 Sapria himalayana HOM05D004333 ORTHO05D000009 1.1e-48 199.9 366 34.7
Cpa.g.c29767.1 Carica papaya HOM05D004333 ORTHO05D005363 1.4e-48 199.5 250 45.2
CAN.G481.57 Capsicum annuum HOM05D004333 ORTHO05D005363 2.3e-46 192.2 170 54.1
CAN.G481.60 Capsicum annuum HOM05D004333 ORTHO05D005363 2.3e-46 192.2 170 54.1
SHI08278 Sapria himalayana HOM05D004333 ORTHO05D005363 5.9e-42 177.6 221 45.7
Psat0s3076g0080 Pisum sativum HOM05D004333 ORTHO05D001713 7.0e-35 154.1 142 51.4
CAN.G481.58 Capsicum annuum HOM05D004333 ORTHO05D005363 1.7e-33 149.4 204 41.7
CAN.G481.59 Capsicum annuum HOM05D004333 ORTHO05D005363 1.0e-30 140.2 122 50.8
Psat4g066600 Pisum sativum HOM05D004333 ORTHO05D005363 2.8e-28 132.1 153 43.8
SHI08279 Sapria himalayana HOM05D004333 ORTHO05D005363 2.4e-27 129.0 126 46.8
MCO09G360 Micromonas commoda HOM05D004333 ORTHO05D005363 2.6e-21 109.0 195 33.8
arahy.Tifrunner.gnm1.ann1.7A8JPA Arachis hypogaea HOM05D004333 ORTHO05D005363 4.4e-21 108.2 107 53.3
Psat1g176920 Pisum sativum HOM05D004333 ORTHO05D005363 3.1e-19 102.1 141 44.0
Nitab4.5_0004178g0050 Nicotiana tabacum HOM05D004333 ORTHO05D005363 4.1e-19 101.7 123 43.1
Os12g0233600 Oryza sativa ssp. japonica HOM05D004333 ORTHO05D005363 1.0e-17 97.1 330 26.7
Oeu049088.1 Olea europaea HOM05D004333 ORTHO05D005363 5.2e-14 84.7 94 43.6
SEGI_10720 Sequoiadendron giganteum HOM05D004333 ORTHO05D005363 2.6e-13 82.4 99 40.4
Psat1g176800 Pisum sativum HOM05D004029 ORTHO05D004613 9.8e-13 80.5 108 41.7
Oeu001936.1 Olea europaea HOM05D004333 ORTHO05D005363 1.1e-11 77.0 96 40.6
CSS0044449 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 1.5e-08 66.6 96 37.5
Nitab4.5_0004178g0040 Nicotiana tabacum HOM05D004333 ORTHO05D005363 5.6e-08 64.7 135 31.1
Eucgr.D00251 Eucalyptus grandis HOM05D004333 ORTHO05D005363 1.6e-07 63.2 342 24.3
SHI08286 Sapria himalayana HOM05D004333 ORTHO05D005363 6.8e-06 57.8 131 28.2


User provided reference genes

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