Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO356G0003 Selaginella moellendorffii HOM05D004452 ORTHO05D005358 0.0e+00 1242.3 659 100.0
Mapoly0012s0112 Marchantia polymorpha HOM05D004452 ORTHO05D005358 1.1e-159 567.8 762 48.2
GSVIVG01009484001 Vitis vinifera HOM05D004452 ORTHO05D005358 3.7e-147 526.2 708 45.6
Lj4A59T44 Lonicera japonica HOM05D004452 ORTHO05D005358 1.5e-143 514.2 709 44.7
COL.COLO4_26520 Corchorus olitorius HOM05D004452 ORTHO05D005358 5.5e-143 512.3 710 44.2
ClCG05G019920 Citrullus lanatus HOM05D004452 ORTHO05D005358 1.4e-141 507.7 709 44.0
Dinv39307 Davidia involucrata HOM05D004452 ORTHO05D005358 1.4e-141 507.7 680 47.4
Cc10_g04060 Coffea canephora HOM05D004452 ORTHO05D005358 3.0e-141 506.5 712 44.0
Gohir.D05G206300 Gossypium hirsutum HOM05D004452 ORTHO05D005358 3.0e-141 506.5 710 44.4
Sabra14G0019200 Salix brachista HOM05D004452 ORTHO05D005358 6.8e-141 505.4 700 44.3
CsaV3_4G034360 Cucumis sativus L. HOM05D004452 ORTHO05D005358 2.6e-140 503.4 710 44.2
PGR031G1897 Punica granatum HOM05D004452 ORTHO05D005358 2.6e-140 503.4 705 45.8
Potri.014G028100 Populus trichocarpa HOM05D004452 ORTHO05D005358 3.4e-140 503.1 707 44.4
MELO3C016756.2 Cucumis melo HOM05D004452 ORTHO05D005358 4.4e-140 502.7 712 44.2
TAR381G1434 Trochodendron aralioides HOM05D004452 ORTHO05D005358 4.4e-140 502.7 707 43.3
Ciclev10000290m.g Citrus clementina HOM05D004452 ORTHO05D005358 5.7e-140 502.3 709 43.2
Duzib093G1704 Durio zibethinus HOM05D004452 ORTHO05D005358 7.5e-140 501.9 706 44.2
Nitab4.5_0002760g0030 Nicotiana tabacum HOM05D004452 ORTHO05D005358 9.7e-140 501.5 707 45.8
CSS0026728 Camellia sinensis var. sinensis HOM05D004452 ORTHO05D005358 1.3e-139 501.1 705 44.1
CAN.G1030.10 Capsicum annuum HOM05D004452 ORTHO05D005358 2.2e-139 500.4 710 44.4
Nn5g30286 Nelumbo nucifera HOM05D004452 ORTHO05D005358 2.2e-139 500.4 716 43.3
ATR1126G044 Amborella trichopoda HOM05D004452 ORTHO05D005358 6.3e-139 498.8 710 44.4
MBI06_g02568_MAGBIO Magnolia biondii HOM05D004452 ORTHO05D005358 6.3e-139 498.8 719 42.7
Thecc.08G005800 Theobroma cacao HOM05D004452 ORTHO05D005358 6.3e-139 498.8 712 44.0
TWI56G0235 Tripterygium wilfordii HOM05D004452 ORTHO05D005358 6.3e-139 498.8 709 45.6
CANSAT11G1000 Cannabis sativa HOM05D004452 ORTHO05D005358 8.3e-139 498.4 703 45.8
Aqoxy5G01224 Aquilegia oxysepala HOM05D004452 ORTHO05D005358 1.1e-138 498.0 716 44.1
Lsat_1_v5_gn_1_21181 Lactuca sativa HOM05D004452 ORTHO05D005358 1.1e-138 498.0 714 43.3
Gorai.009G212700 Gossypium raimondii HOM05D004452 ORTHO05D005358 1.4e-138 497.7 708 43.8
FvH4_2g34320 Fragaria vesca HOM05D004452 ORTHO05D005358 1.8e-138 497.3 701 44.7
vmacro21515 Vaccinium macrocarpon HOM05D004452 ORTHO05D005358 1.8e-138 497.3 709 43.6
CiPaw.15G055600 Carya illinoinensis HOM05D004452 ORTHO05D005358 2.4e-138 496.9 713 43.2
FAN20G1510 Fragaria x ananassa HOM05D004452 ORTHO05D005358 2.4e-138 496.9 701 44.7
Cfa018088 Carpinus fangiana HOM05D004452 ORTHO05D005358 3.1e-138 496.5 714 42.9
HanXRQChr02g0039511 Helianthus annuus HOM05D004452 ORTHO05D005358 3.1e-138 496.5 707 44.8
Ca_15944_v3 Cicer arietinum L. HOM05D004452 ORTHO05D005358 5.3e-138 495.7 702 42.6
PGSC0003DMG400007967 Solanum tuberosum HOM05D004452 ORTHO05D005358 5.3e-138 495.7 709 45.4
arahy.Tifrunner.gnm1.ann1.UAD7VL Arachis hypogaea HOM05D004452 ORTHO05D005358 9.1e-138 495.0 692 44.9
RcHm_v2.0_Chr6g0308041 Rosa chinensis HOM05D004452 ORTHO05D005358 9.1e-138 495.0 705 43.0
TWI36G0852 Tripterygium wilfordii HOM05D004452 ORTHO05D005358 1.2e-137 494.6 710 46.1
Nitab4.5_0000287g0200 Nicotiana tabacum HOM05D004452 ORTHO05D005358 2.0e-137 493.8 711 45.0
Actinidia23285 Actinidia chinensis HOM05D004452 ORTHO05D005358 2.7e-137 493.4 715 43.5
Manes.18G038000 Manihot esculenta HOM05D004452 ORTHO05D005358 2.7e-137 493.4 663 44.6
arahy.Tifrunner.gnm1.ann1.Y5ZCTQ Arachis hypogaea HOM05D004452 ORTHO05D005358 4.5e-137 492.7 692 44.5
Prupe.1G434400 Prunus persica HOM05D004452 ORTHO05D005358 4.5e-137 492.7 705 42.4
Rhsim06G0050800 Rhododendron simsii HOM05D004452 ORTHO05D005358 4.5e-137 492.7 723 43.3
QL02p004676 Quercus lobata HOM05D004452 ORTHO05D005358 5.9e-137 492.3 708 44.5
Medtr3g101790 Medicago truncatula HOM05D004452 ORTHO05D005358 1.0e-136 491.5 703 42.2
Atru.chr13.704 Acer truncatum HOM05D004452 ORTHO05D005358 1.3e-136 491.1 711 43.0
Lj1g0004160 Lotus japonicus HOM05D004452 ORTHO05D005358 1.3e-136 491.1 700 43.1
FAN15G1326 Fragaria x ananassa HOM05D004452 ORTHO05D005358 1.7e-136 490.7 707 44.3
DCAR_019448 Daucus carota HOM05D004452 ORTHO05D005358 3.8e-136 489.6 711 43.6
Psat5g042600 Pisum sativum HOM05D004452 ORTHO05D005358 3.8e-136 489.6 681 42.6
FAN27G2914 Fragaria x ananassa HOM05D004452 ORTHO05D005358 8.5e-136 488.4 708 44.2
PSO170G2588 Papaver somniferum HOM05D004452 ORTHO05D005358 8.5e-136 488.4 709 43.9
Oeu043579.4 Olea europaea HOM05D004452 ORTHO05D005358 1.1e-135 488.0 709 43.0
Glyma.06G040600 Glycine max HOM05D004452 ORTHO05D005358 1.9e-135 487.3 693 42.4
PSO210G0441 Papaver somniferum HOM05D004452 ORTHO05D005358 3.2e-135 486.5 709 43.9
SGA_v2.0_scaffold28G11777 Striga asiatica HOM05D004452 ORTHO05D005358 3.2e-135 486.5 707 43.3
Lalb_Chr11g0062611 Lupinus albus HOM05D004452 ORTHO05D005358 4.2e-135 486.1 669 44.1
Sed0009272 Sechium edule HOM05D004452 ORTHO05D005358 5.5e-135 485.7 714 42.4
MSTRG.24335 Avicennia marina HOM05D004452 ORTHO05D005358 1.2e-134 484.6 708 44.9
Glyma.04G039400 Glycine max HOM05D004452 ORTHO05D005358 2.1e-134 483.8 693 43.1
Eucgr.F02336 Eucalyptus grandis HOM05D004452 ORTHO05D005358 3.6e-134 483.0 713 43.3
MD15G1081700 Malus domestica HOM05D004452 ORTHO05D005358 3.6e-134 483.0 707 42.9
THA.LOC104822853 Tarenaya hassleriana HOM05D004452 ORTHO05D005358 6.1e-134 482.3 673 44.1
Solyc04g078830.3 Solanum lycopersicum HOM05D004452 ORTHO05D005358 1.0e-133 481.5 710 44.6
TPR.G24198 Trifolium pratense HOM05D004452 ORTHO05D005358 8.8e-133 478.4 694 41.6
ECA247G0253 Erigeron canadensis HOM05D004452 ORTHO05D005358 3.4e-132 476.5 708 43.9
FAN24G0195 Fragaria x ananassa HOM05D004452 ORTHO05D005358 3.4e-132 476.5 750 42.0
Migut.N02714 Erythranthe guttata HOM05D004452 ORTHO05D005358 1.3e-131 474.6 709 44.0
Gohir.A05G203100 Gossypium hirsutum HOM05D004452 ORTHO05D005358 1.3e-131 474.6 636 45.6
VMungo1309G1308 Vigna mungo HOM05D004452 ORTHO05D005358 4.8e-131 472.6 695 42.7
Phvul.009G065600 Phaseolus vulgaris HOM05D004452 ORTHO05D005358 1.1e-130 471.5 695 42.9
Aa31LG9G12980 Aethionema arabicum HOM05D004452 ORTHO05D005358 1.4e-130 471.1 708 43.2
AUR62041892 Chenopodium quinoa HOM05D004452 ORTHO05D005358 4.1e-130 469.5 709 44.3
Sc15g0006090 Simmondsia chinensis HOM05D004452 ORTHO05D005358 4.5e-129 466.1 710 42.4
Hma1.2p1_2046F.1_g312410 Hydrangea macrophylla HOM05D004452 ORTHO05D005358 1.3e-128 464.5 731 40.9
Peaxi162Scf00252g00221 Petunia axillaris HOM05D004452 ORTHO05D005358 3.8e-128 463.0 708 43.6
CARHR181170 Cardamine hirsuta HOM05D004452 ORTHO05D005358 5.0e-128 462.6 714 43.8
Pp3c7_25670 Physcomitrium patens HOM05D004452 ORTHO05D005358 1.9e-127 460.7 658 43.0
AT5G42920 Arabidopsis thaliana HOM05D004452 ORTHO05D005358 5.5e-127 459.1 711 43.6
Carub.0008s0587 Capsella rubella HOM05D004452 ORTHO05D005358 5.5e-127 459.1 714 43.3
EL10Ac1g01836 Beta vulgaris HOM05D004452 ORTHO05D005358 9.5e-127 458.4 709 43.3
Sp2g07660 Schrenkiella parvula HOM05D004452 ORTHO05D005358 1.2e-126 458.0 685 43.5
Cpa.g.sc49.27 Carica papaya HOM05D004452 ORTHO05D005358 4.0e-125 453.0 703 41.5
CDE04G2017 Ceratophyllum demersum HOM05D004452 ORTHO05D005358 8.9e-125 451.8 593 46.0
Thhalv10003147m.g Eutrema salsugineum HOM05D004452 ORTHO05D005358 7.5e-124 448.7 682 42.8
Hund23866 Selenicereus undatus HOM05D004452 ORTHO05D005358 9.8e-124 448.4 717 43.1
CDE08G0013 Ceratophyllum demersum HOM05D004452 ORTHO05D005358 1.7e-123 447.6 697 40.7
AL8G17930 Arabidopsis lyrata HOM05D004452 ORTHO05D005358 2.2e-123 447.2 711 42.3
Zm00001eb255990 Zea mays HOM05D004452 ORTHO05D005358 4.9e-123 446.0 702 42.6
BcaC06g31738 Brassica carinata HOM05D004452 ORTHO05D005358 6.3e-123 445.7 681 43.3
BcaC02g10792 Brassica carinata HOM05D004452 ORTHO05D005358 1.4e-122 444.5 687 43.2
C04p25060 Brassica napus HOM05D004452 ORTHO05D005358 1.4e-122 444.5 687 43.2
BolC4t24007H Brassica oleracea HOM05D004452 ORTHO05D005358 1.4e-122 444.5 687 43.2
A06p48170 Brassica napus HOM05D004452 ORTHO05D005358 1.2e-121 441.4 675 43.3
AagrBONN_evm.TU.Sc2ySwM_228.4151 Anthoceros agrestis HOM05D004452 ORTHO05D005358 3.9e-120 436.4 671 42.3
BraA06t27686Z Brassica rapa HOM05D004452 ORTHO05D005358 2.5e-119 433.7 675 43.3
Dinv35952 Davidia involucrata HOM05D004452 ORTHO05D005358 4.3e-119 433.0 438 57.1
SHI08268 Sapria himalayana HOM05D004452 ORTHO05D005358 1.2e-118 431.4 689 40.2
SalBow8G3632 Salvia bowleyana HOM05D004452 ORTHO05D005358 1.6e-105 387.9 650 41.5
SalBow8G0374 Salvia bowleyana HOM05D004452 ORTHO05D005358 2.1e-105 387.5 650 41.5
Lalb_Chr08g0245391 Lupinus albus HOM05D004452 ORTHO05D005358 3.7e-99 366.7 379 55.1
Os02g0767100 Oryza sativa ssp. japonica HOM05D004452 ORTHO05D005358 5.1e-96 356.3 372 50.5
CANSAT11G0118 Cannabis sativa HOM05D004452 ORTHO05D005358 6.6e-96 355.9 372 53.2
Sc02g0007190 Simmondsia chinensis HOM05D004452 ORTHO05D005358 6.6e-96 355.9 378 55.8
CiPaw.16G042900 Carya illinoinensis HOM05D004452 ORTHO05D005358 1.5e-95 354.8 377 50.7
Glyma.17G241800 Glycine max HOM05D004452 ORTHO05D005358 1.8e-93 347.8 378 50.3
Phvul.001G022500 Phaseolus vulgaris HOM05D004452 ORTHO05D005358 7.6e-92 342.4 379 49.3
Glyma.14G083300 Glycine max HOM05D004452 ORTHO05D005358 1.7e-91 341.3 378 50.0
MSTRG.25087 Avicennia marina HOM05D004452 ORTHO05D005358 1.1e-90 338.6 375 51.2
Oeu023860.1 Olea europaea HOM05D004452 ORTHO05D005358 5.4e-90 336.3 372 50.0
THA.LOC104812571 Tarenaya hassleriana HOM05D004452 ORTHO05D005358 5.4e-90 336.3 379 52.2
arahy.Tifrunner.gnm1.ann1.IXK305 Arachis hypogaea HOM05D004452 ORTHO05D005358 2.7e-89 334.0 378 48.9
arahy.Tifrunner.gnm1.ann1.VB8FSW Arachis hypogaea HOM05D004452 ORTHO05D005358 2.7e-89 334.0 378 48.9
VMungo0647G1811 Vigna mungo HOM05D004452 ORTHO05D005358 7.3e-87 325.9 401 45.6
SEGI_30975 Sequoiadendron giganteum HOM05D004452 ORTHO05D005358 1.5e-84 318.2 334 56.3
AT1G45233 Arabidopsis thaliana HOM05D004452 ORTHO05D005358 2.1e-81 307.8 373 46.4
Thhalv10011479m.g Eutrema salsugineum HOM05D004452 ORTHO05D005358 7.9e-81 305.8 373 46.1
Nn7g37344 Nelumbo nucifera HOM05D004452 ORTHO05D005358 3.9e-80 303.5 295 55.6
AL1G52910 Arabidopsis lyrata HOM05D004452 ORTHO05D005358 1.5e-79 301.6 373 45.0
Sp1g34090 Schrenkiella parvula HOM05D004452 ORTHO05D005358 1.5e-79 301.6 368 45.4
AagrBONN_evm.TU.Sc2ySwM_117.2784 Anthoceros agrestis HOM05D004452 ORTHO05D005358 1.9e-79 301.2 381 45.1
Carub.0001s3568 Capsella rubella HOM05D004452 ORTHO05D005358 4.8e-78 296.6 373 44.2
CARHR036370 Cardamine hirsuta HOM05D004452 ORTHO05D005358 1.1e-77 295.4 370 44.6
Sed0026470 Sechium edule HOM05D004452 ORTHO05D005358 1.4e-77 295.0 375 46.4
Aa31sc108G100 Aethionema arabicum HOM05D004452 ORTHO05D005358 3.1e-77 293.9 377 45.1
Sopen04g032430 Solanum pennellii HOM05D004452 ORTHO05D005358 9.9e-76 288.9 567 38.1
A10p06900 Brassica napus HOM05D004452 ORTHO05D005358 2.2e-75 287.7 367 44.7
BcaC08g42910 Brassica carinata HOM05D004452 ORTHO05D005358 2.9e-75 287.3 366 44.3
C06p01470 Brassica napus HOM05D004452 ORTHO05D005358 4.9e-75 286.6 366 44.3
BraA10t42942Z Brassica rapa HOM05D004452 ORTHO05D005358 2.4e-74 284.3 367 46.6
BolC6t35279H Brassica oleracea HOM05D004452 ORTHO05D005358 5.4e-74 283.1 367 44.1
HPP92_016717 Vanilla planifolia HOM05D004452 ORTHO05D005358 5.4e-74 283.1 619 35.1
unitig_26.g10021 Utricularia gibba HOM05D002518 ORTHO05D002630 3.3e-71 273.9 372 46.5
BcaB07g33871 Brassica carinata HOM05D004452 ORTHO05D005358 5.6e-71 273.1 354 44.9
AUR62038817 Chenopodium quinoa HOM05D004452 ORTHO05D005358 6.9e-69 266.2 499 38.1
CBR_g24409 Chara braunii HOM05D004452 ORTHO05D005358 4.6e-65 253.4 359 42.3
TAR625G1031 Trochodendron aralioides HOM05D004452 ORTHO05D005358 5.5e-58 229.9 177 65.0
unitig_749.g13678 Utricularia gibba HOM05D004452 ORTHO05D005358 3.0e-56 224.2 568 31.5
Potri.002G125300 Populus trichocarpa HOM05D004452 ORTHO05D005358 5.3e-53 213.4 334 41.6
Nn3g17073 Nelumbo nucifera HOM05D004452 ORTHO05D005358 5.9e-52 209.9 193 58.0
MCO13G423 Micromonas commoda HOM05D004452 ORTHO05D005358 3.8e-51 207.2 702 29.5
Cre17.g705550 Chlamydomonas reinhardtii HOM05D004452 ORTHO05D005358 3.9e-40 170.6 399 34.1
MD08G1099200 Malus domestica HOM05D004452 ORTHO05D005358 2.6e-36 157.9 120 70.0
SEGI_02411 Sequoiadendron giganteum HOM05D004452 ORTHO05D000001 3.0e-32 144.4 366 32.0
MD08G1099300 Malus domestica HOM05D004452 ORTHO05D005358 1.2e-25 122.5 148 43.2
SalBow8G2832 Salvia bowleyana HOM05D004452 ORTHO05D005358 3.2e-18 97.8 64 70.3
SalBow8G5418 Salvia bowleyana HOM05D004452 ORTHO05D005358 3.2e-18 97.8 64 70.3
Aa31LG7G10550 Aethionema arabicum HOM05D004452 ORTHO05D005358 8.8e-16 89.7 91 50.5
Aa31LG7G10540 Aethionema arabicum HOM05D004452 ORTHO05D005358 4.1e-13 80.9 87 55.2
Dinv35953 Davidia involucrata HOM05D004452 ORTHO05D005358 3.5e-12 77.8 142 35.2
MD08G1099500 Malus domestica HOM05D004452 ORTHO05D005358 8.6e-11 73.2 134 35.1
CARHR174670 Cardamine hirsuta HOM05D004452 ORTHO05D005358 7.5e-07 60.1 58 48.3


User provided reference genes

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