Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO353G0102 Selaginella moellendorffii HOM05D003384 ORTHO05D018108 2.2e-88 328.9 166 100.0
SMO199G0120 Selaginella moellendorffii HOM05D003384 ORTHO05D376227 1.2e-54 216.9 135 85.9
SMO009G0025 Selaginella moellendorffii HOM05D003384 ORTHO05D378488 3.9e-45 185.3 129 81.4
SMO036G0002 Selaginella moellendorffii HOM05D003384 ORTHO05D374652 6.6e-45 184.5 127 81.9
SMO353G0290 Selaginella moellendorffii HOM05D003384 ORTHO05D018108 9.9e-41 170.6 119 80.7
SMO112G0025 Selaginella moellendorffii HOM05D003384 ORTHO05D378420 1.3e-40 170.2 117 82.1
SMO364G0055 Selaginella moellendorffii HOM05D003384 ORTHO05D018108 3.7e-35 152.1 95 85.3
SMO077G0006 Selaginella moellendorffii HOM05D003384 ORTHO05D018108 3.1e-34 149.1 104 80.8
SMO360G0013 Selaginella moellendorffii HOM05D003384 ORTHO05D377588 7.9e-30 134.4 73 94.5
SMO358G0063 Selaginella moellendorffii HOM05D003384 ORTHO05D005024 1.4e-26 123.6 149 55.7
SMO286G0018 Selaginella moellendorffii HOM05D003384 ORTHO05D018108 5.8e-25 118.2 66 93.9
SMO149G0003 Selaginella moellendorffii HOM05D003384 ORTHO05D375727 7.6e-25 117.9 85 78.8
SMO162G0012 Selaginella moellendorffii HOM05D003384 ORTHO05D375018 2.7e-22 109.4 106 65.1
SMO244G0098 Selaginella moellendorffii HOM05D003384 ORTHO05D376564 4.6e-22 108.6 80 77.5
AagrBONN_evm.TU.Sc2ySwM_344.2607 Anthoceros agrestis HOM05D003384 ORTHO05D005024 5.7e-20 101.7 149 47.7
Mapoly0047s0031 Marchantia polymorpha HOM05D003384 ORTHO05D005024 7.4e-20 101.3 149 48.3
Pp3c6_8600 Physcomitrium patens HOM05D003384 ORTHO05D005024 1.6e-19 100.1 149 47.7
Hund07041 Selenicereus undatus HOM05D003384 ORTHO05D005024 4.1e-18 95.5 119 52.9
Sed0002627 Sechium edule HOM05D003384 ORTHO05D005024 1.2e-17 94.0 94 58.5
EL10Ac2g04005 Beta vulgaris HOM05D003384 ORTHO05D005024 1.5e-17 93.6 119 51.3
MELO3C018382.2 Cucumis melo HOM05D003384 ORTHO05D005024 2.0e-17 93.2 125 48.8
CsaV3_5G010490 Cucumis sativus L. HOM05D003384 ORTHO05D005024 2.0e-17 93.2 125 48.8
Gohir.A06G008900 Gossypium hirsutum HOM05D003384 ORTHO05D005024 2.0e-17 93.2 119 50.4
Os01g0888500 Oryza sativa ssp. japonica HOM05D003384 ORTHO05D005024 2.6e-17 92.8 119 52.1
AUR62002272 Chenopodium quinoa HOM05D003384 ORTHO05D005024 3.4e-17 92.4 118 50.0
CBR_g19873 Chara braunii HOM05D003384 ORTHO05D005024 4.5e-17 92.0 94 57.4
Duzib093G0913 Durio zibethinus HOM05D003384 ORTHO05D005024 5.9e-17 91.7 119 50.4
SGA_v2.0_scaffold2G01034 Striga asiatica HOM05D003384 ORTHO05D005024 5.9e-17 91.7 119 50.4
Thecc.05G055600 Theobroma cacao HOM05D003384 ORTHO05D005024 5.9e-17 91.7 119 49.6
Oeu001502.2 Olea europaea HOM05D003384 ORTHO05D005024 7.7e-17 91.3 119 50.4
Os05g0104650 Oryza sativa ssp. japonica HOM05D003384 ORTHO05D005024 7.7e-17 91.3 124 50.0
Gohir.A04G076000 Gossypium hirsutum HOM05D003384 ORTHO05D005024 1.0e-16 90.9 119 49.6
Sc09g0005970 Simmondsia chinensis HOM05D003384 ORTHO05D005024 1.0e-16 90.9 124 50.0
Gohir.D04G115100 Gossypium hirsutum HOM05D003384 ORTHO05D005024 1.3e-16 90.5 94 55.3
Gorai.009G419700 Gossypium raimondii HOM05D003384 ORTHO05D005024 1.3e-16 90.5 94 55.3
HanXRQChr08g0232581 Helianthus annuus HOM05D003384 ORTHO05D005024 1.3e-16 90.5 117 48.7
COL.COLO4_27063 Corchorus olitorius HOM05D003384 ORTHO05D005024 1.7e-16 90.1 119 49.6
ClCG07G004540 Citrullus lanatus HOM05D003384 ORTHO05D005024 2.2e-16 89.7 163 42.3
PGSC0003DMG400025849 Solanum tuberosum HOM05D003384 ORTHO05D005024 2.9e-16 89.4 119 49.6
GSVIVG01016499001 Vitis vinifera HOM05D003384 ORTHO05D005024 2.9e-16 89.4 119 49.6
ATR0580G036 Amborella trichopoda HOM05D003384 ORTHO05D005024 3.8e-16 89.0 119 48.7
AUR62042439 Chenopodium quinoa HOM05D003384 ORTHO05D005024 3.8e-16 89.0 118 47.5
Sabra10G0154400 Salix brachista HOM05D003384 ORTHO05D005024 3.8e-16 89.0 94 55.3
Nitab4.5_0000333g0100 Nicotiana tabacum HOM05D003384 ORTHO05D005024 5.0e-16 88.6 119 49.6
Ah.03g145450 Amaranthus hybridus HOM05D003384 ORTHO05D005024 6.5e-16 88.2 119 48.7
Ciclev10030516m.g Citrus clementina HOM05D003384 ORTHO05D005024 6.5e-16 88.2 150 44.0
Haze_17110 Corylus avellana HOM05D003384 ORTHO05D005024 6.5e-16 88.2 119 50.4
Prupe.8G024000 Prunus persica HOM05D003384 ORTHO05D005024 6.5e-16 88.2 119 47.1
PGR004G0663 Punica granatum HOM05D003384 ORTHO05D005024 6.5e-16 88.2 119 50.4
TWI18G1054 Tripterygium wilfordii HOM05D003384 ORTHO05D005024 6.5e-16 88.2 119 48.7
Zm00001eb067720 Zea mays HOM05D003384 ORTHO05D005024 6.5e-16 88.2 124 48.4
Cfa001433 Carpinus fangiana HOM05D003384 ORTHO05D005024 8.5e-16 87.8 119 49.6
Cfa014646 Carpinus fangiana HOM05D003384 ORTHO05D005024 8.5e-16 87.8 119 50.4
DCAR_011724 Daucus carota HOM05D003384 ORTHO05D005024 8.5e-16 87.8 119 48.7
Migut.F00756 Erythranthe guttata HOM05D003384 ORTHO05D005024 8.5e-16 87.8 94 54.3
Peaxi162Scf00668g00439 Petunia axillaris HOM05D003384 ORTHO05D005024 8.5e-16 87.8 119 48.7
Potri.008G058600 Populus trichocarpa HOM05D003384 ORTHO05D005024 8.5e-16 87.8 103 52.4
Zm00001eb055170 Zea mays HOM05D003384 ORTHO05D005024 8.5e-16 87.8 124 46.8
FAN04G2139 Fragaria x ananassa HOM05D003384 ORTHO05D005024 1.1e-15 87.4 121 49.6
Lsat_1_v5_gn_6_96581 Lactuca sativa HOM05D003384 ORTHO05D005024 1.1e-15 87.4 94 54.3
Lj1C941G12 Lonicera japonica HOM05D003384 ORTHO05D005024 1.1e-15 87.4 94 54.3
Nitab4.5_0001169g0010 Nicotiana tabacum HOM05D003384 ORTHO05D005024 1.1e-15 87.4 119 49.6
SEGI_27631 Sequoiadendron giganteum HOM05D003384 ORTHO05D005024 1.1e-15 87.4 119 48.7
A07p40090 Brassica napus HOM05D003384 ORTHO05D005024 1.4e-15 87.0 93 54.8
Cc07_g16480 Coffea canephora HOM05D003384 ORTHO05D005024 1.4e-15 87.0 119 48.7
ECA246G5320 Erigeron canadensis HOM05D003384 ORTHO05D005024 1.4e-15 87.0 119 47.9
FvH4_5g19530 Fragaria vesca HOM05D003384 ORTHO05D005024 1.4e-15 87.0 94 55.3
FAN18G2272 Fragaria x ananassa HOM05D003384 ORTHO05D005024 1.4e-15 87.0 94 55.3
FAN18G2911 Fragaria x ananassa HOM05D003384 ORTHO05D005024 1.4e-15 87.0 94 55.3
Lj8C80T4 Lonicera japonica HOM05D003384 ORTHO05D005024 1.4e-15 87.0 119 46.2
Peaxi162Scf00685g00122 Petunia axillaris HOM05D003384 ORTHO05D005024 1.4e-15 87.0 94 54.3
Carub.0002s2105 Capsella rubella HOM05D003384 ORTHO05D005024 1.9e-15 86.7 95 53.7
HanXRQChr05g0161141 Helianthus annuus HOM05D003384 ORTHO05D005024 1.9e-15 86.7 119 47.9
Lalb_Chr15g0084621 Lupinus albus HOM05D003384 ORTHO05D005024 1.9e-15 86.7 119 46.2
Lalb_Chr18g0053121 Lupinus albus HOM05D003384 ORTHO05D005024 1.9e-15 86.7 94 53.2
Potri.010G200200 Populus trichocarpa HOM05D003384 ORTHO05D005024 1.9e-15 86.7 94 55.3
CAN.G370.86 Capsicum annuum HOM05D003384 ORTHO05D005024 2.5e-15 86.3 119 48.7
QL08p061129 Quercus lobata HOM05D003384 ORTHO05D005024 2.5e-15 86.3 119 47.9
SalBow6G5500 Salvia bowleyana HOM05D003384 ORTHO05D005024 2.5e-15 86.3 119 47.9
C06p33470 Brassica napus HOM05D003384 ORTHO05D005024 3.2e-15 85.9 96 53.1
C06p48450 Brassica napus HOM05D003384 ORTHO05D005024 3.2e-15 85.9 96 53.1
BolC6t38461H Brassica oleracea HOM05D003384 ORTHO05D005024 3.2e-15 85.9 96 53.1
BolC6t39873H Brassica oleracea HOM05D003384 ORTHO05D005024 3.2e-15 85.9 96 53.1
BraA07t30586Z Brassica rapa HOM05D003384 ORTHO05D005024 3.2e-15 85.9 96 53.1
SMO011G0040 Selaginella moellendorffii HOM05D003384 ORTHO05D018108 3.2e-15 85.9 47 93.6
SMO116G0212 Selaginella moellendorffii HOM05D003384 ORTHO05D018108 3.2e-15 85.9 47 93.6
SMO347G0175 Selaginella moellendorffii HOM05D003384 ORTHO05D018108 3.2e-15 85.9 47 93.6
VMungo1309G0201 Vigna mungo HOM05D003384 ORTHO05D005024 3.2e-15 85.9 117 49.6
BraA07t31553Z Brassica rapa HOM05D003384 ORTHO05D005024 4.2e-15 85.5 96 52.1
Cc04_g11240 Coffea canephora HOM05D003384 ORTHO05D005024 4.2e-15 85.5 119 47.9
Dinv42277 Davidia involucrata HOM05D003384 ORTHO05D005024 4.2e-15 85.5 119 47.9
Lj2g0004466 Lotus japonicus HOM05D003384 ORTHO05D005024 4.2e-15 85.5 119 47.1
MD03G1203100 Malus domestica HOM05D003384 ORTHO05D005024 4.2e-15 85.5 142 43.7
Prupe.1G542100 Prunus persica HOM05D003384 ORTHO05D005024 4.2e-15 85.5 119 47.9
Solyc02g076720.3 Solanum lycopersicum HOM05D003384 ORTHO05D005024 4.2e-15 85.5 119 48.7
Sopen02g021650 Solanum pennellii HOM05D003384 ORTHO05D005024 4.2e-15 85.5 119 48.7
TPR.G25489 Trifolium pratense HOM05D003384 ORTHO05D005024 4.2e-15 85.5 94 53.2
Cre08.g364800 Chlamydomonas reinhardtii HOM05D003384 ORTHO05D005024 5.5e-15 85.1 94 52.1
Ca_17447_v3 Cicer arietinum L. HOM05D003384 ORTHO05D005024 5.5e-15 85.1 119 46.2
Ca_30022_v3 Cicer arietinum L. HOM05D003384 ORTHO05D005024 5.5e-15 85.1 119 46.2
Eucgr.I00206 Eucalyptus grandis HOM05D003384 ORTHO05D005024 5.5e-15 85.1 119 47.9
Thhalv10018011m.g Eutrema salsugineum HOM05D003384 ORTHO05D005024 5.5e-15 85.1 94 53.2
FAN08G1276 Fragaria x ananassa HOM05D003384 ORTHO05D005024 5.5e-15 85.1 119 48.7
FAN13G0754 Fragaria x ananassa HOM05D003384 ORTHO05D005024 5.5e-15 85.1 119 48.7
MBI14_g11677_MAGBIO Magnolia biondii HOM05D003384 ORTHO05D005024 5.5e-15 85.1 94 54.3
Phvul.009G004700 Phaseolus vulgaris HOM05D003384 ORTHO05D005024 5.5e-15 85.1 142 44.4
TPR.G18022 Trifolium pratense HOM05D003384 ORTHO05D005024 5.5e-15 85.1 94 53.2
TAR633G2052 Trochodendron aralioides HOM05D003384 ORTHO05D005024 5.5e-15 85.1 119 47.9
BcaC08g46858 Brassica carinata HOM05D003384 ORTHO05D005024 7.2e-15 84.7 96 52.1
CARHR067520 Cardamine hirsuta HOM05D003384 ORTHO05D005024 7.2e-15 84.7 95 52.6
CiPaw.01G290900 Carya illinoinensis HOM05D003384 ORTHO05D005024 7.2e-15 84.7 119 47.1
ClCG07G004570 Citrullus lanatus HOM05D003384 ORTHO05D005024 7.2e-15 84.7 119 47.1
Lj6g0002532 Lotus japonicus HOM05D003384 ORTHO05D005024 7.2e-15 84.7 119 46.2
PSO782G4051 Papaver somniferum HOM05D003384 ORTHO05D005024 7.2e-15 84.7 119 47.9
Sp5g29440 Schrenkiella parvula HOM05D003384 ORTHO05D005024 7.2e-15 84.7 95 52.6
THA.LOC104816583 Tarenaya hassleriana HOM05D003384 ORTHO05D005024 7.2e-15 84.7 124 46.8
vmacro20478 Vaccinium macrocarpon HOM05D003384 ORTHO05D005024 7.2e-15 84.7 119 49.6
AT1G74260 Arabidopsis thaliana HOM05D003384 ORTHO05D005024 9.4e-15 84.3 95 51.6
A07p29480 Brassica napus HOM05D003384 ORTHO05D005024 9.4e-15 84.3 96 52.1
MD04G1022300 Malus domestica HOM05D003384 ORTHO05D005024 9.4e-15 84.3 119 47.1
PSO478G4441 Papaver somniferum HOM05D003384 ORTHO05D005024 9.4e-15 84.3 119 47.9
RcHm_v2.0_Chr7g0204141 Rosa chinensis HOM05D003384 ORTHO05D005024 9.4e-15 84.3 119 47.9
SalBow6G5425 Salvia bowleyana HOM05D003384 ORTHO05D005024 9.4e-15 84.3 119 47.1
PGSC0003DMG400010235 Solanum tuberosum HOM05D003384 ORTHO05D005024 9.4e-15 84.3 119 47.9
CAN.G606.41 Capsicum annuum HOM05D003384 ORTHO05D005024 1.2e-14 84.0 89 57.3
Rhsim08G0242600 Rhododendron simsii HOM05D003384 ORTHO05D005024 1.2e-14 84.0 94 54.3
Medtr6g011360 Medicago truncatula HOM05D003384 ORTHO05D005024 1.6e-14 83.6 119 46.2
Glyma.11G221100 Glycine max HOM05D003384 ORTHO05D005024 2.1e-14 83.2 119 47.1
Psat7g023040 Pisum sativum HOM05D003384 ORTHO05D005024 2.1e-14 83.2 119 45.4
VMungo1383G2986 Vigna mungo HOM05D003384 ORTHO05D005024 2.1e-14 83.2 94 52.1
CDE05G1365 Ceratophyllum demersum HOM05D003384 ORTHO05D005024 2.7e-14 82.8 94 53.2
Glyma.18G036300 Glycine max HOM05D003384 ORTHO05D005024 2.7e-14 82.8 94 52.1
Medtr8g100045 Medicago truncatula HOM05D003384 ORTHO05D005024 2.7e-14 82.8 119 46.2
Actinidia02926 Actinidia chinensis HOM05D003384 ORTHO05D005024 3.6e-14 82.4 119 48.7
AL2G34140 Arabidopsis lyrata HOM05D003384 ORTHO05D005024 3.6e-14 82.4 95 50.5
PSO837G0041 Papaver somniferum HOM05D003384 ORTHO05D005024 3.6e-14 82.4 119 47.9
Phvul.001G234500 Phaseolus vulgaris HOM05D003384 ORTHO05D005024 3.6e-14 82.4 94 51.1
HPP92_005602 Vanilla planifolia HOM05D003384 ORTHO05D005024 3.6e-14 82.4 94 52.1
arahy.Tifrunner.gnm1.ann1.Z31J18 Arachis hypogaea HOM05D003384 ORTHO05D005024 4.6e-14 82.0 94 54.3
TAR629G0479 Trochodendron aralioides HOM05D003384 ORTHO05D005024 4.6e-14 82.0 119 47.1
Rhsim10G0184100 Rhododendron simsii HOM05D003384 ORTHO05D005024 6.1e-14 81.6 119 47.9
SHI22710 Sapria himalayana HOM05D003384 ORTHO05D005024 6.1e-14 81.6 94 52.1
Solyc01g107270.4 Solanum lycopersicum HOM05D003384 ORTHO05D005024 6.1e-14 81.6 115 47.8
Hma1.2p1_0998F.1_g246010 Hydrangea macrophylla HOM05D003384 ORTHO05D005024 7.9e-14 81.3 89 52.8
SMO032G0004 Selaginella moellendorffii HOM05D003320 ORTHO05D003941 1.0e-13 80.9 80 60.0
CDE05G0219 Ceratophyllum demersum HOM05D003384 ORTHO05D005024 1.4e-13 80.5 94 52.1
SMO341G0001 Selaginella moellendorffii HOM05D003384 ORTHO05D018108 1.4e-13 80.5 48 85.4
CSS0027778 Camellia sinensis var. sinensis HOM05D003384 ORTHO05D005024 1.8e-13 80.1 121 46.3
CSS0047277 Camellia sinensis var. sinensis HOM05D003384 ORTHO05D005024 2.3e-13 79.7 121 47.1
Manes.10G027300 Manihot esculenta HOM05D003384 ORTHO05D005024 3.0e-13 79.3 119 46.2
Aqoxy1G00556 Aquilegia oxysepala HOM05D003384 ORTHO05D005024 5.1e-13 78.6 94 52.1
Aa31LG7G13860 Aethionema arabicum HOM05D003384 ORTHO05D005024 6.7e-13 78.2 94 50.0
AUR62009267 Chenopodium quinoa HOM05D003384 ORTHO05D005024 6.7e-13 78.2 88 52.3
PRCOL_00000695 Prasinoderma coloniale HOM05D003384 ORTHO05D005024 6.7e-13 78.2 88 51.1
Aqoxy5G02953 Aquilegia oxysepala HOM05D003384 ORTHO05D005024 1.5e-12 77.0 94 52.1
BcaC08g45597 Brassica carinata HOM05D003384 ORTHO05D005024 2.0e-12 76.6 85 56.5
Dinv10579 Davidia involucrata HOM05D003384 ORTHO05D005024 2.0e-12 76.6 108 49.1
AUR62034627 Chenopodium quinoa HOM05D003384 ORTHO05D005024 3.3e-12 75.9 101 51.5
MCO14G233 Micromonas commoda HOM05D003384 ORTHO05D005024 2.8e-11 72.8 97 47.4
Sopen01g049520 Solanum pennellii HOM05D003384 ORTHO05D005024 2.4e-10 69.7 98 50.0
SMO286G0001 Selaginella moellendorffii HOM05D003384 ORTHO05D374823 3.4e-09 65.9 35 97.1
MD07G1195900 Malus domestica HOM05D003384 ORTHO05D005024 3.6e-06 55.8 46 60.9
Sabra08G0043100 Salix brachista HOM05D001467 ORTHO05D001447 4.7e-06 55.5 49 63.3


User provided reference genes

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