Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO352G0080 Selaginella moellendorffii HOM05D005521 ORTHO05D008962 0.0e+00 8889.6 4506 100.0
AagrBONN_evm.TU.Sc2ySwM_228.3514 Anthoceros agrestis HOM05D005521 ORTHO05D008962 0.0e+00 6437.8 4396 72.8
Cre12.g484250 Chlamydomonas reinhardtii HOM05D005521 ORTHO05D008962 0.0e+00 5315.4 4407 60.5
PRCOL_00003512 Prasinoderma coloniale HOM05D005521 ORTHO05D008962 0.0e+00 5287.2 4398 60.1
Pp3c22_18230 Physcomitrium patens HOM05D005521 ORTHO05D008962 0.0e+00 4968.3 3799 65.2
Pp3c22_18240 Physcomitrium patens HOM05D005521 ORTHO05D008962 0.0e+00 4968.3 3799 65.2
MCO11G302 Micromonas commoda HOM05D005521 ORTHO05D008962 0.0e+00 4958.3 4401 57.0
Mapoly0064s0039 Marchantia polymorpha HOM05D005521 ORTHO05D008962 0.0e+00 4344.3 2783 78.0
PRCOL_00002002 Prasinoderma coloniale HOM05D005521 ORTHO05D008962 0.0e+00 2411.3 4450 32.6
Cre14.g624950 Chlamydomonas reinhardtii HOM05D005521 ORTHO05D008962 0.0e+00 2363.6 4494 32.6
SMO332G0013 Selaginella moellendorffii HOM05D005521 ORTHO05D008962 0.0e+00 2340.5 4401 33.0
MCO13G141 Micromonas commoda HOM05D005521 ORTHO05D008962 0.0e+00 2333.9 4495 31.7
CBR_g23890 Chara braunii HOM05D005521 ORTHO05D008962 0.0e+00 2305.8 4472 32.1
CBR_g39582 Chara braunii HOM05D005521 ORTHO05D008962 0.0e+00 2305.4 4524 32.4
MCO12G412 Micromonas commoda HOM05D005521 ORTHO05D008962 0.0e+00 2300.0 4443 32.8
PRCOL_00005933 Prasinoderma coloniale HOM05D005521 ORTHO05D008962 0.0e+00 2295.0 4470 31.8
Cre09.g403800 Chlamydomonas reinhardtii HOM05D005521 ORTHO05D008962 0.0e+00 2292.3 4563 32.7
CBR_g57824 Chara braunii HOM05D005521 ORTHO05D008962 0.0e+00 2273.4 3373 41.8
MCO08G072 Micromonas commoda HOM05D005521 ORTHO05D008962 0.0e+00 2231.8 4519 30.9
PRCOL_00005693 Prasinoderma coloniale HOM05D005521 ORTHO05D008962 0.0e+00 2211.4 4515 31.9
Mapoly0004s0117 Marchantia polymorpha HOM05D005521 ORTHO05D008962 0.0e+00 2205.3 4494 31.9
Mapoly0083s0015 Marchantia polymorpha HOM05D005521 ORTHO05D008962 0.0e+00 2181.8 3361 38.4
Cre14.g627576 Chlamydomonas reinhardtii HOM05D005521 ORTHO05D008962 0.0e+00 2154.4 3467 37.3
SMO117G0259 Selaginella moellendorffii HOM05D005521 ORTHO05D008962 0.0e+00 2146.7 3220 38.8
MCO09G678 Micromonas commoda HOM05D005521 ORTHO05D008962 0.0e+00 2144.4 3552 36.3
PRCOL_00006448 Prasinoderma coloniale HOM05D005521 ORTHO05D008962 0.0e+00 2139.8 3363 37.8
Pp3c7_8280 Physcomitrium patens HOM05D005521 ORTHO05D008962 0.0e+00 2127.8 3299 38.0
CBR_g5736 Chara braunii HOM05D005521 ORTHO05D008962 0.0e+00 2082.0 3597 34.9
Cre09.g392282 Chlamydomonas reinhardtii HOM05D005521 ORTHO05D008962 0.0e+00 2072.0 3330 36.9
Cre05.g244250 Chlamydomonas reinhardtii HOM05D005521 ORTHO05D008962 0.0e+00 2050.4 3488 35.3
Pp3c17_1970 Physcomitrium patens HOM05D005521 ORTHO05D008962 0.0e+00 2041.2 3468 35.4
SMO364G0392 Selaginella moellendorffii HOM05D005521 ORTHO05D008962 0.0e+00 2041.2 3350 36.6
Cre02.g141606 Chlamydomonas reinhardtii HOM05D005521 ORTHO05D008962 0.0e+00 2018.8 3426 35.4
AagrBONN_evm.TU.Sc2ySwM_344.5243 Anthoceros agrestis HOM05D005521 ORTHO05D008962 0.0e+00 2010.0 3048 37.3
AagrBONN_evm.TU.Sc2ySwM_117.2769 Anthoceros agrestis HOM05D005521 ORTHO05D008962 0.0e+00 2003.8 3365 36.0
PRCOL_00006358 Prasinoderma coloniale HOM05D005521 ORTHO05D008962 0.0e+00 2000.3 3378 35.8
Pp3c27_6210 Physcomitrium patens HOM05D005521 ORTHO05D008962 0.0e+00 1996.1 3252 36.4
MCO02G109 Micromonas commoda HOM05D005521 ORTHO05D008962 0.0e+00 1995.3 3442 34.6
Cre02.g107050 Chlamydomonas reinhardtii HOM05D005521 ORTHO05D008962 0.0e+00 1994.2 3372 36.0
Pp3c6_28550 Physcomitrium patens HOM05D005521 ORTHO05D008962 0.0e+00 1993.8 3497 35.1
Cre16.g685450 Chlamydomonas reinhardtii HOM05D005521 ORTHO05D008962 0.0e+00 1990.3 3493 34.6
MCO02G369 Micromonas commoda HOM05D005521 ORTHO05D008962 0.0e+00 1988.8 3431 35.2
Mapoly0043s0089 Marchantia polymorpha HOM05D005521 ORTHO05D008962 0.0e+00 1983.4 3605 34.7
MCO10G182 Micromonas commoda HOM05D005521 ORTHO05D008962 0.0e+00 1980.3 3507 34.4
PRCOL_00006702 Prasinoderma coloniale HOM05D005521 ORTHO05D008962 0.0e+00 1979.1 3677 33.9
Mapoly0032s0050 Marchantia polymorpha HOM05D005521 ORTHO05D008962 0.0e+00 1978.8 3593 34.1
MCO12G056 Micromonas commoda HOM05D005521 ORTHO05D008962 0.0e+00 1965.7 3422 35.0
Mapoly0035s0021 Marchantia polymorpha HOM05D005521 ORTHO05D008962 0.0e+00 1961.8 3630 33.3
SMO116G0311 Selaginella moellendorffii HOM05D005521 ORTHO05D008962 0.0e+00 1951.8 3249 35.1
Mapoly0022s0169 Marchantia polymorpha HOM05D005521 ORTHO05D008962 0.0e+00 1946.8 3674 33.1
PRCOL_00001499 Prasinoderma coloniale HOM05D005521 ORTHO05D008962 0.0e+00 1941.8 3828 32.8
Pp3c12_9940 Physcomitrium patens HOM05D005521 ORTHO05D008962 0.0e+00 1910.6 3418 34.0
PRCOL_00006732 Prasinoderma coloniale HOM05D005521 ORTHO05D008962 0.0e+00 1904.4 3408 34.0
Pp3c23_17280 Physcomitrium patens HOM05D005521 ORTHO05D008962 0.0e+00 1881.3 3474 33.6
Mapoly0015s0073 Marchantia polymorpha HOM05D005521 ORTHO05D008962 0.0e+00 1864.7 3479 33.6
Cre03.g145127 Chlamydomonas reinhardtii HOM05D005521 ORTHO05D008962 0.0e+00 1840.1 3529 33.5
Cre12.g555950 Chlamydomonas reinhardtii HOM05D005521 ORTHO05D008962 0.0e+00 1798.9 3484 32.9
MCO14G480 Micromonas commoda HOM05D005521 ORTHO05D008962 0.0e+00 1791.2 3552 32.5
PRCOL_00005761 Prasinoderma coloniale HOM05D005521 ORTHO05D008962 0.0e+00 1751.9 3536 33.4
Cre02.g107350 Chlamydomonas reinhardtii HOM05D005521 ORTHO05D008962 0.0e+00 1729.9 3659 32.4
SMO011G0045 Selaginella moellendorffii HOM05D005521 ORTHO05D008962 0.0e+00 1654.0 2801 35.2
Cre06.g265950 Chlamydomonas reinhardtii HOM05D005521 ORTHO05D008962 0.0e+00 1600.1 4420 28.1
Cre11.g476050 Chlamydomonas reinhardtii HOM05D005521 ORTHO05D008962 0.0e+00 1594.7 2658 35.0
Pp3c20_6270 Physcomitrium patens HOM05D005521 ORTHO05D008962 0.0e+00 1487.6 2750 33.3
AagrBONN_evm.TU.Sc2ySwM_228.4355 Anthoceros agrestis HOM05D005521 ORTHO05D008962 0.0e+00 1429.1 2614 34.2
SMO367G1221 Selaginella moellendorffii HOM05D005521 ORTHO05D008962 0.0e+00 1379.4 2473 34.0
CBR_g57822 Chara braunii HOM05D005521 ORTHO05D008962 0.0e+00 1331.2 880 71.9
AagrBONN_evm.TU.Sc2ySwM_117.2559 Anthoceros agrestis HOM05D005521 ORTHO05D008962 0.0e+00 1279.6 1962 37.3
Cre06.g250300 Chlamydomonas reinhardtii HOM05D005521 ORTHO05D017330 0.0e+00 1276.5 3639 27.9
Cfa025692 Carpinus fangiana HOM05D005521 ORTHO05D008962 0.0e+00 1255.0 4209 25.8
MCO14G126 Micromonas commoda HOM05D005521 ORTHO05D017330 0.0e+00 1243.0 3945 25.9
CBR_g12673 Chara braunii HOM05D000019 ORTHO05D000002 0.0e+00 1162.1 3093 29.4
PRCOL_00001970 Prasinoderma coloniale HOM05D005521 ORTHO05D017330 0.0e+00 1115.5 3324 27.2
AagrBONN_evm.TU.Sc2ySwM_362.572 Anthoceros agrestis HOM05D005521 ORTHO05D008962 4.0e-309 1067.0 1819 34.9
Mapoly0108s0011 Marchantia polymorpha HOM05D005521 ORTHO05D017330 4.9e-299 1033.5 3455 25.4
Mapoly0070s0015 Marchantia polymorpha HOM05D005521 ORTHO05D008962 5.1e-288 996.9 3729 23.8
CBR_g45840 Chara braunii HOM05D000019 ORTHO05D008962 1.7e-283 981.9 1666 35.5
AagrBONN_evm.TU.Sc2ySwM_117.525 Anthoceros agrestis HOM05D005521 ORTHO05D008962 8.4e-275 953.0 1506 36.1
CBR_g45837 Chara braunii HOM05D005521 ORTHO05D008962 3.2e-234 818.1 1233 38.0
AagrBONN_evm.TU.Sc2ySwM_362.573 Anthoceros agrestis HOM05D005521 ORTHO05D008962 7.0e-221 773.9 1083 41.7
Pp3c22_18130 Physcomitrium patens HOM05D005521 ORTHO05D000001 2.0e-212 745.7 694 58.8
Mapoly0064s0041 Marchantia polymorpha HOM05D005521 ORTHO05D008962 1.7e-211 742.7 598 61.2
AagrBONN_evm.TU.Sc2ySwM_117.524 Anthoceros agrestis HOM05D005521 ORTHO05D008962 1.5e-202 713.0 1257 36.0
CBR_g62 Chara braunii HOM05D005521 ORTHO05D008962 1.2e-201 709.9 1307 32.7
CBR_g34178 Chara braunii HOM05D000409 ORTHO05D008962 3.6e-201 708.4 1251 33.9
Cre06.g297850 Chlamydomonas reinhardtii HOM05D005521 ORTHO05D008962 6.6e-195 687.6 3130 22.9
CBR_g53503 Chara braunii HOM05D005521 ORTHO05D008962 4.0e-192 678.3 989 38.6
CBR_g34182 Chara braunii HOM05D000019 ORTHO05D008962 1.6e-177 629.8 872 40.6
PRCOL_00001999 Prasinoderma coloniale HOM05D005521 ORTHO05D008962 4.0e-176 625.2 1865 27.7
CBR_g64 Chara braunii HOM05D005521 ORTHO05D008962 1.3e-174 620.2 1027 36.7
Pp3c22_18120 Physcomitrium patens HOM05D005521 ORTHO05D008962 4.9e-174 618.2 419 68.7
AagrBONN_evm.TU.Sc2ySwM_117.2560 Anthoceros agrestis HOM05D005521 ORTHO05D008962 6.6e-171 607.8 1229 35.4
CBR_g57826 Chara braunii HOM05D005521 ORTHO05D008962 9.9e-151 540.8 460 60.4
SMO367G0359 Selaginella moellendorffii HOM05D005521 ORTHO05D008962 7.9e-148 531.2 817 37.6
CBR_g4417 Chara braunii HOM05D005521 ORTHO05D008962 2.5e-138 499.6 2187 24.1
CBR_g22156 Chara braunii HOM05D005521 ORTHO05D008962 9.6e-130 471.1 866 32.6
CBR_g26004 Chara braunii HOM05D005521 ORTHO05D008962 1.8e-128 466.8 1041 29.9
AagrBONN_evm.TU.Sc2ySwM_344.1203 Anthoceros agrestis HOM05D005521 ORTHO05D008962 3.6e-116 426.0 1346 25.6
Pp3c20_6280 Physcomitrium patens HOM05D005521 ORTHO05D008962 2.1e-108 400.2 722 33.4
CBR_g57832 Chara braunii HOM05D000019 ORTHO05D000048 5.0e-102 379.0 317 61.5
CBR_g38121 Chara braunii HOM05D005521 ORTHO05D017330 8.8e-83 315.1 1581 22.1
CBR_g31470 Chara braunii HOM05D000019 ORTHO05D000353 3.9e-62 246.5 199 60.3
CBR_g57828 Chara braunii HOM05D005521 ORTHO05D132823 6.0e-55 222.6 172 58.1
AagrBONN_evm.TU.Sc2ySwM_344.4756 Anthoceros agrestis HOM05D005521 ORTHO05D008962 1.3e-49 204.9 212 51.4
AagrBONN_evm.TU.Sc2ySwM_344.4755 Anthoceros agrestis HOM05D005521 ORTHO05D008962 5.4e-48 199.5 441 33.6
CBR_g31015 Chara braunii HOM05D005521 ORTHO05D000002 7.1e-48 199.1 427 29.3
CBR_g51641 Chara braunii HOM05D005521 ORTHO05D008962 9.2e-48 198.7 475 28.0
CBR_g49351 Chara braunii HOM05D005521 ORTHO05D008962 1.3e-46 194.9 558 26.3
CBR_g4424 Chara braunii HOM05D000019 ORTHO05D000048 6.2e-44 186.0 619 25.2
CBR_g34179 Chara braunii HOM05D005521 ORTHO05D008962 1.2e-42 181.8 317 31.9
CBR_g52364 Chara braunii HOM05D000019 ORTHO05D000002 6.4e-41 176.0 578 25.3
CBR_g53520 Chara braunii HOM05D005521 ORTHO05D008962 1.9e-40 174.5 234 38.0
CBR_g52377 Chara braunii HOM05D005521 ORTHO05D008962 9.3e-40 172.2 284 38.0
CBR_g38132 Chara braunii HOM05D005521 ORTHO05D000014 1.6e-39 171.4 201 41.8
AagrBONN_evm.TU.Sc2ySwM_117.2296 Anthoceros agrestis HOM05D005521 ORTHO05D017330 4.6e-39 169.9 481 23.3
AagrBONN_evm.TU.Sc2ySwM_344.4757 Anthoceros agrestis HOM05D005521 ORTHO05D008962 5.6e-37 162.9 151 55.0
CBR_g51368 Chara braunii HOM05D005521 ORTHO05D038443 1.3e-36 161.8 275 34.9
AagrBONN_evm.TU.Sc2ySwM_117.2295 Anthoceros agrestis HOM05D005521 ORTHO05D017330 4.5e-34 153.3 611 22.1
AagrBONN_evm.TU.Sc2ySwM_344.4551 Anthoceros agrestis HOM05D005521 ORTHO05D008962 4.5e-34 153.3 290 36.9
CBR_g31001 Chara braunii HOM05D005521 ORTHO05D008962 1.8e-30 141.4 348 27.6
AagrBONN_evm.TU.Sc2ySwM_228.4356 Anthoceros agrestis HOM05D005521 ORTHO05D038443 3.9e-30 140.2 244 32.0
CBR_g54114 Chara braunii HOM05D000019 ORTHO05D000002 2.4e-27 131.0 164 41.5
CBR_g4416 Chara braunii HOM05D005521 ORTHO05D008962 1.7e-25 124.8 171 36.3
CBR_g65 Chara braunii HOM05D000019 ORTHO05D000048 1.9e-24 121.3 144 45.8
AagrBONN_evm.TU.Sc2ySwM_344.1202 Anthoceros agrestis HOM05D005521 ORTHO05D008962 5.3e-19 103.2 338 24.6
CBR_g49350 Chara braunii HOM05D000019 ORTHO05D000048 1.1e-16 95.5 319 22.3
Pp3c22_18220 Physcomitrium patens HOM05D005521 ORTHO05D008962 1.0e-14 89.0 107 41.1
SMO269G0026 Selaginella moellendorffii HOM05D005521 ORTHO05D376179 1.3e-14 88.6 187 26.2
AagrBONN_evm.TU.Sc2ySwM_344.5278 Anthoceros agrestis HOM05D005500 ORTHO05D006906 1.8e-14 88.2 465 21.3
AagrBONN_evm.TU.Sc2ySwM_344.5244 Anthoceros agrestis HOM05D005521 ORTHO05D070413 3.3e-13 84.0 369 22.0
Mapoly0032s0058 Marchantia polymorpha HOM05D005521 ORTHO05D008962 4.8e-12 80.1 160 29.4
CBR_g57834 Chara braunii HOM05D005521 ORTHO05D008962 1.1e-11 79.0 112 43.8
CBR_g31463 Chara braunii HOM05D008971 ORTHO05D011892 2.4e-11 77.8 73 50.7
Mapoly0043s0088 Marchantia polymorpha HOM05D005521 ORTHO05D253589 1.4e-08 68.6 106 31.1
AagrBONN_evm.TU.Sc2ySwM_344.4543 Anthoceros agrestis HOM05D005521 ORTHO05D008962 3.2e-08 67.4 55 56.4
CBR_g54073 Chara braunii HOM05D000019 ORTHO05D000002 1.6e-07 65.1 193 24.9
CBR_g50869 Chara braunii HOM05D000019 ORTHO05D000002 3.6e-07 63.9 107 30.8
AagrBONN_evm.TU.Sc2ySwM_344.4739 Anthoceros agrestis HOM05D005521 ORTHO05D008962 7.9e-07 62.8 72 44.4
Cre01.g021950 Chlamydomonas reinhardtii HOM05D005521 ORTHO05D146048 5.1e-06 60.1 563 19.5
Pp3c1_36760 Physcomitrium patens HOM05D005521 ORTHO05D319434 5.1e-06 60.1 130 26.2


User provided reference genes

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