Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO352G0047 Selaginella moellendorffii HOM05D004784 ORTHO05D005762 7.0e-237 823.5 410 100.0
Prupe.4G018500 Prunus persica HOM05D004784 ORTHO05D005762 1.2e-167 593.6 387 73.6
Hund21422 Selenicereus undatus HOM05D004784 ORTHO05D005762 5.8e-167 591.3 400 70.5
Hund23455 Selenicereus undatus HOM05D004784 ORTHO05D005762 2.9e-166 589.0 400 69.8
Sed0013135 Sechium edule HOM05D004784 ORTHO05D005762 1.1e-165 587.0 400 70.8
ClCG03G004610 Citrullus lanatus HOM05D004784 ORTHO05D005762 1.9e-165 586.3 376 73.9
FvH4_3g01820 Fragaria vesca HOM05D004784 ORTHO05D005762 2.4e-165 585.9 390 72.1
FAN25G0478 Fragaria x ananassa HOM05D004784 ORTHO05D005762 4.2e-165 585.1 390 72.1
Solyc02g080810.3 Solanum lycopersicum HOM05D004784 ORTHO05D005762 4.2e-165 585.1 387 72.4
Aqoxy1G03119 Aquilegia oxysepala HOM05D004784 ORTHO05D005762 7.1e-165 584.3 400 69.2
RcHm_v2.0_Chr5g0002651 Rosa chinensis HOM05D004784 ORTHO05D005762 9.3e-165 583.9 390 71.8
CANSAT56G2555 Cannabis sativa HOM05D004784 ORTHO05D005762 1.6e-164 583.2 400 69.8
Sed0006727 Sechium edule HOM05D004784 ORTHO05D005762 1.6e-164 583.2 400 69.2
Sopen02g025500 Solanum pennellii HOM05D004784 ORTHO05D005762 1.6e-164 583.2 387 71.8
PGSC0003DMG400016444 Solanum tuberosum HOM05D004784 ORTHO05D005762 1.6e-164 583.2 387 71.8
TWI63G0560 Tripterygium wilfordii HOM05D004784 ORTHO05D005762 1.6e-164 583.2 387 72.4
FAN21G1227 Fragaria x ananassa HOM05D004784 ORTHO05D005762 2.1e-164 582.8 390 71.8
THA.LOC104809494 Tarenaya hassleriana HOM05D004784 ORTHO05D005762 2.1e-164 582.8 400 70.2
MD10G1323700 Malus domestica HOM05D004784 ORTHO05D005762 2.7e-164 582.4 387 72.4
TPR.G37066 Trifolium pratense HOM05D004784 ORTHO05D005762 2.7e-164 582.4 377 73.5
TAR629G2745 Trochodendron aralioides HOM05D004784 ORTHO05D005762 2.7e-164 582.4 400 69.8
AagrBONN_evm.TU.Sc2ySwM_344.1952 Anthoceros agrestis HOM05D004784 ORTHO05D005762 4.6e-164 581.6 394 70.6
Phvul.003G080400 Phaseolus vulgaris HOM05D004784 ORTHO05D005762 4.6e-164 581.6 400 69.5
Lalb_Chr18g0056491 Lupinus albus HOM05D004784 ORTHO05D005762 6.0e-164 581.3 376 72.6
VMungo1215G1817 Vigna mungo HOM05D004784 ORTHO05D005762 6.0e-164 581.3 406 69.5
Hma1.2p1_0298F.1_g117720 Hydrangea macrophylla HOM05D004784 ORTHO05D005762 1.0e-163 580.5 400 69.2
Sc24g0000220 Simmondsia chinensis HOM05D004784 ORTHO05D005762 1.0e-163 580.5 376 72.1
Cc09_g01490 Coffea canephora HOM05D004784 ORTHO05D005762 1.3e-163 580.1 387 71.6
Glyma.15G109300 Glycine max HOM05D004784 ORTHO05D005762 1.3e-163 580.1 371 72.8
Hma1.2p1_0091F.1_g046500 Hydrangea macrophylla HOM05D004784 ORTHO05D005762 1.3e-163 580.1 400 69.0
QL05p072692 Quercus lobata HOM05D004784 ORTHO05D005762 1.3e-163 580.1 376 73.1
TWI38G1114 Tripterygium wilfordii HOM05D004784 ORTHO05D005762 1.3e-163 580.1 387 71.6
CiPaw.09G093700 Carya illinoinensis HOM05D004784 ORTHO05D005762 1.8e-163 579.7 376 72.6
Duzib192G0808 Durio zibethinus HOM05D004784 ORTHO05D005762 1.8e-163 579.7 387 72.4
Eucgr.L02773 Eucalyptus grandis HOM05D004784 ORTHO05D005762 3.0e-163 578.9 387 72.1
CiPaw.10G073000 Carya illinoinensis HOM05D004784 ORTHO05D005762 3.9e-163 578.6 376 72.6
CDE02G4424 Ceratophyllum demersum HOM05D004784 ORTHO05D005762 3.9e-163 578.6 399 69.2
MELO3C002444.2 Cucumis melo HOM05D004784 ORTHO05D005762 3.9e-163 578.6 376 72.9
CsaV3_1G010620 Cucumis sativus L. HOM05D004784 ORTHO05D005762 3.9e-163 578.6 376 73.1
Nitab4.5_0007963g0010 Nicotiana tabacum HOM05D004784 ORTHO05D005762 3.9e-163 578.6 387 70.8
Psat4g005920 Pisum sativum HOM05D004784 ORTHO05D005762 3.9e-163 578.6 406 68.5
PGR142G1596 Punica granatum HOM05D004784 ORTHO05D005762 3.9e-163 578.6 388 71.9
CDE05G1701 Ceratophyllum demersum HOM05D004784 ORTHO05D005762 5.1e-163 578.2 400 69.2
Nitab4.5_0002695g0040 Nicotiana tabacum HOM05D004784 ORTHO05D005762 5.1e-163 578.2 387 70.8
AT1G11860 Arabidopsis thaliana HOM05D004784 ORTHO05D005762 6.7e-163 577.8 400 69.5
Glyma.07G262100 Glycine max HOM05D004784 ORTHO05D005762 6.7e-163 577.8 387 70.5
Glyma.09G004700 Glycine max HOM05D004784 ORTHO05D005762 6.7e-163 577.8 387 70.8
MBI02_g15378_MAGBIO Magnolia biondii HOM05D004784 ORTHO05D005762 6.7e-163 577.8 371 72.8
Ah.14g087950 Amaranthus hybridus HOM05D004784 ORTHO05D005762 8.7e-163 577.4 400 68.5
Medtr4g132360 Medicago truncatula HOM05D004784 ORTHO05D005762 8.7e-163 577.4 371 72.8
Phvul.006G148700 Phaseolus vulgaris HOM05D004784 ORTHO05D005762 1.1e-162 577.0 371 72.0
Aa31LG1G2870 Aethionema arabicum HOM05D004784 ORTHO05D005762 1.5e-162 576.6 400 69.2
Haze_06821 Corylus avellana HOM05D004784 ORTHO05D005762 1.5e-162 576.6 376 71.8
Oeu002744.1 Olea europaea HOM05D004784 ORTHO05D005762 1.5e-162 576.6 400 69.0
QL02p099920 Quercus lobata HOM05D004784 ORTHO05D005762 1.5e-162 576.6 400 69.0
Dinv13913 Davidia involucrata HOM05D004784 ORTHO05D005762 1.9e-162 576.2 401 68.1
Gohir.A05G171500 Gossypium hirsutum HOM05D004784 ORTHO05D005762 1.9e-162 576.2 399 69.7
AL1G23030 Arabidopsis lyrata HOM05D004784 ORTHO05D005762 2.5e-162 575.9 394 70.6
Gohir.D05G174600 Gossypium hirsutum HOM05D004784 ORTHO05D005762 2.5e-162 575.9 399 69.9
PSO541G3045 Papaver somniferum HOM05D004784 ORTHO05D005762 3.3e-162 575.5 377 71.6
Thecc.06G223500 Theobroma cacao HOM05D004784 ORTHO05D005762 3.3e-162 575.5 400 69.5
Ah.09g234740 Amaranthus hybridus HOM05D004784 ORTHO05D005762 4.3e-162 575.1 400 67.8
PSO675G1799 Papaver somniferum HOM05D004784 ORTHO05D005762 4.3e-162 575.1 377 71.6
arahy.Tifrunner.gnm1.ann1.EH8QHL Arachis hypogaea HOM05D004784 ORTHO05D005762 5.6e-162 574.7 387 70.5
CARHR012170 Cardamine hirsuta HOM05D004784 ORTHO05D005762 5.6e-162 574.7 387 71.8
Glyma.17G012000 Glycine max HOM05D004784 ORTHO05D005762 5.6e-162 574.7 387 70.3
Carub.0001s1151 Capsella rubella HOM05D004784 ORTHO05D005762 7.4e-162 574.3 400 69.5
COL.COLO4_31797 Corchorus olitorius HOM05D004784 ORTHO05D005762 7.4e-162 574.3 400 69.0
Dinv20065 Davidia involucrata HOM05D004784 ORTHO05D005762 7.4e-162 574.3 400 68.0
Lalb_Chr15g0087671 Lupinus albus HOM05D004784 ORTHO05D005762 7.4e-162 574.3 383 70.8
C08p47920 Brassica napus HOM05D004784 ORTHO05D005762 9.6e-162 573.9 400 69.5
Cfa000202 Carpinus fangiana HOM05D004784 ORTHO05D005762 9.6e-162 573.9 376 71.5
Ca_21072_v3 Cicer arietinum L. HOM05D004784 ORTHO05D005762 9.6e-162 573.9 387 70.8
Thhalv10007781m.g Eutrema salsugineum HOM05D004784 ORTHO05D005762 9.6e-162 573.9 400 69.2
SEGI_27497 Sequoiadendron giganteum HOM05D004784 ORTHO05D005762 9.6e-162 573.9 403 68.0
Peaxi162Scf00131g01117 Petunia axillaris HOM05D004784 ORTHO05D005762 1.3e-161 573.5 387 70.0
Sc05g0009310 Simmondsia chinensis HOM05D004784 ORTHO05D005762 1.6e-161 573.2 399 69.7
A09p64310 Brassica napus HOM05D004784 ORTHO05D005762 2.1e-161 572.8 376 72.1
BraA08t35239Z Brassica rapa HOM05D004784 ORTHO05D005762 2.1e-161 572.8 387 71.1
BraA09t41774Z Brassica rapa HOM05D004784 ORTHO05D005762 2.1e-161 572.8 376 72.1
BolC8t52329H Brassica oleracea HOM05D004784 ORTHO05D005762 2.8e-161 572.4 387 71.6
SalBow8G0639 Salvia bowleyana HOM05D004784 ORTHO05D005762 3.7e-161 572.0 400 69.2
Lj1A1232G87 Lonicera japonica HOM05D004784 ORTHO05D005762 4.8e-161 571.6 400 68.0
Lj6g0010262 Lotus japonicus HOM05D004784 ORTHO05D005762 4.8e-161 571.6 400 68.5
Oeu013835.1 Olea europaea HOM05D004784 ORTHO05D005762 6.2e-161 571.2 400 67.8
Os04g0623800 Oryza sativa ssp. japonica HOM05D004784 ORTHO05D005762 6.2e-161 571.2 408 68.9
C08p14960 Brassica napus HOM05D004784 ORTHO05D005762 8.1e-161 570.9 387 70.5
BolC8t49127H Brassica oleracea HOM05D004784 ORTHO05D005762 8.1e-161 570.9 387 70.5
AUR62012328 Chenopodium quinoa HOM05D004784 ORTHO05D005762 8.1e-161 570.9 400 69.5
Gohir.D06G155300 Gossypium hirsutum HOM05D004784 ORTHO05D005762 8.1e-161 570.9 387 71.1
Gorai.010G181500 Gossypium raimondii HOM05D004784 ORTHO05D005762 8.1e-161 570.9 387 71.3
CAN.G1014.12 Capsicum annuum HOM05D004784 ORTHO05D005762 1.1e-160 570.5 387 69.8
Sp1g10470 Schrenkiella parvula HOM05D004784 ORTHO05D005762 1.1e-160 570.5 400 69.0
AUR62022970 Chenopodium quinoa HOM05D004784 ORTHO05D005762 1.4e-160 570.1 376 72.6
Gohir.A06G149200 Gossypium hirsutum HOM05D004784 ORTHO05D005762 4.0e-160 568.5 400 68.5
Migut.M01336 Erythranthe guttata HOM05D004784 ORTHO05D005762 5.3e-160 568.2 400 67.8
Rhsim13G0152700 Rhododendron simsii HOM05D004784 ORTHO05D005762 5.3e-160 568.2 387 70.5
unitig_92.g28113 Utricularia gibba HOM05D004784 ORTHO05D005762 5.3e-160 568.2 400 69.0
Ciclev10015433m.g Citrus clementina HOM05D004784 ORTHO05D005762 6.9e-160 567.8 400 67.5
DCAR_008168 Daucus carota HOM05D004784 ORTHO05D005762 6.9e-160 567.8 412 67.5
Mapoly0129s0024 Marchantia polymorpha HOM05D004784 ORTHO05D005762 9.0e-160 567.4 390 69.2
HPP92_004130 Vanilla planifolia HOM05D004784 ORTHO05D005762 9.0e-160 567.4 381 69.3
Pp3c12_9500 Physcomitrium patens HOM05D004784 ORTHO05D005762 1.5e-159 566.6 409 66.0
Atru.chr10.2254 Acer truncatum HOM05D004784 ORTHO05D005762 2.0e-159 566.2 376 71.5
MSTRG.7197 Avicennia marina HOM05D004784 ORTHO05D005762 2.0e-159 566.2 387 69.8
Manes.17G025900 Manihot esculenta HOM05D004784 ORTHO05D005762 5.8e-159 564.7 400 67.5
Potri.004G009600 Populus trichocarpa HOM05D004784 ORTHO05D005762 7.6e-159 564.3 400 68.0
arahy.Tifrunner.gnm1.ann1.PLZ2LX Arachis hypogaea HOM05D004784 ORTHO05D005762 1.0e-158 563.9 380 70.5
MSTRG.14637 Avicennia marina HOM05D004784 ORTHO05D005762 1.3e-158 563.5 407 66.6
Sabra11G0005900 Salix brachista HOM05D004784 ORTHO05D005762 1.7e-158 563.1 400 68.0
SGA_v2.0_scaffold7G03812 Striga asiatica HOM05D004784 ORTHO05D005762 1.7e-158 563.1 426 65.0
Nn1g03473 Nelumbo nucifera HOM05D004784 ORTHO05D005762 2.9e-158 562.4 430 64.2
Pp3c4_15010 Physcomitrium patens HOM05D004784 ORTHO05D005762 1.1e-157 560.5 389 68.1
ATR0794G107 Amborella trichopoda HOM05D004784 ORTHO05D005762 1.4e-157 560.1 407 66.1
Potri.011G006800 Populus trichocarpa HOM05D004784 ORTHO05D005762 3.2e-157 558.9 387 70.0
vmacro03682 Vaccinium macrocarpon HOM05D004784 ORTHO05D005762 7.1e-157 557.8 416 66.1
Zm00001eb070250 Zea mays HOM05D004784 ORTHO05D005762 1.6e-156 556.6 396 67.7
Lsat_1_v5_gn_7_16480 Lactuca sativa HOM05D004784 ORTHO05D005762 1.3e-155 553.5 398 68.3
Nn030s41595 Nelumbo nucifera HOM05D004784 ORTHO05D005762 2.3e-155 552.7 361 72.6
GSVIVG01012702001 Vitis vinifera HOM05D004784 ORTHO05D005762 5.1e-155 551.6 355 73.0
RhsimUnG0232700 Rhododendron simsii HOM05D004784 ORTHO05D005762 9.6e-154 547.4 430 63.5
Gorai.009G179900 Gossypium raimondii HOM05D004784 ORTHO05D005762 2.8e-153 545.8 376 70.2
HanXRQChr15g0470421 Helianthus annuus HOM05D004784 ORTHO05D005762 2.8e-153 545.8 355 71.8
EL10Ac6g15683 Beta vulgaris HOM05D004784 ORTHO05D005762 8.2e-153 544.3 443 60.3
BcaB03g13227 Brassica carinata HOM05D004784 ORTHO05D005762 1.4e-152 543.5 355 72.1
A08p33210 Brassica napus HOM05D004784 ORTHO05D005762 5.8e-151 538.1 387 67.7
vmacro22539 Vaccinium macrocarpon HOM05D004784 ORTHO05D005762 7.6e-151 537.7 467 58.7
Sabra04G0005000 Salix brachista HOM05D004784 ORTHO05D005762 2.9e-150 535.8 379 68.1
Oeu040336.3 Olea europaea HOM05D004784 ORTHO05D005762 4.6e-148 528.5 508 54.5
ECA236G1893 Erigeron canadensis HOM05D004784 ORTHO05D005762 2.3e-139 499.6 330 72.1
Cre03.g193750 Chlamydomonas reinhardtii HOM05D004784 ORTHO05D005762 1.7e-137 493.4 375 64.3
TAR627G1106 Trochodendron aralioides HOM05D004784 ORTHO05D005762 3.0e-131 472.6 314 72.0
TAR626G0807 Trochodendron aralioides HOM05D004784 ORTHO05D005762 6.1e-124 448.4 279 75.6
CSS0014504 Camellia sinensis var. sinensis HOM05D004784 ORTHO05D005762 1.6e-116 423.7 382 56.8
PRCOL_00007041 Prasinoderma coloniale HOM05D004784 ORTHO05D005762 4.7e-116 422.2 367 59.7
Actinidia26902 Actinidia chinensis HOM05D004784 ORTHO05D005762 5.2e-115 418.7 310 66.1
MCO15G045 Micromonas commoda HOM05D004784 ORTHO05D005762 9.8e-114 414.5 374 55.3
A06p08340 Brassica napus HOM05D004784 ORTHO05D005762 3.5e-111 406.0 400 53.8
Eucgr.E03909 Eucalyptus grandis HOM05D004784 ORTHO05D005762 4.7e-108 395.6 244 75.0
Atru.chr8.533 Acer truncatum HOM05D004784 ORTHO05D005762 1.2e-95 354.4 228 72.4
MD05G1348800 Malus domestica HOM05D004784 ORTHO05D005762 4.6e-87 325.9 219 71.2
Lalb_Chr20g0118761 Lupinus albus HOM05D004784 ORTHO05D005762 5.6e-85 318.9 193 74.6
Cfa026602 Carpinus fangiana HOM05D004784 ORTHO05D005762 3.5e-79 299.7 408 43.4
BraA06t24032Z Brassica rapa HOM05D000911 ORTHO05D001266 1.3e-78 297.7 233 63.1
Cpa.g.sc152.29 Carica papaya HOM05D004784 ORTHO05D005762 1.8e-75 287.3 194 71.1
Haze_26660 Corylus avellana HOM05D004784 ORTHO05D005762 1.7e-70 270.8 389 42.9
CBR_g24348 Chara braunii HOM05D004784 ORTHO05D005762 1.3e-62 244.6 180 66.7
Sopen07g011340 Solanum pennellii HOM05D004784 ORTHO05D005762 2.8e-52 210.3 179 57.5
EL10Ac1g01135 Beta vulgaris HOM05D004784 ORTHO05D005762 5.1e-46 189.5 142 62.0
EL10Ac2g03767 Beta vulgaris HOM05D004784 ORTHO05D005762 8.7e-46 188.7 141 62.4
Atru.chr8.531 Acer truncatum HOM05D004784 ORTHO05D005762 4.5e-42 176.4 130 64.6
Actinidia05506 Actinidia chinensis HOM05D004784 ORTHO05D005762 1.4e-40 171.4 130 68.5
Actinidia11861 Actinidia chinensis HOM05D004784 ORTHO05D005762 1.8e-19 101.3 97 52.6
Actinidia15969 Actinidia chinensis HOM05D004784 ORTHO05D058202 1.9e-16 91.3 64 60.9
Lsat_1_v5_gn_9_118621 Lactuca sativa HOM05D006894 ORTHO05D008724 9.1e-11 72.4 382 23.6
PGR042G0448 Punica granatum HOM05D006894 ORTHO05D008724 3.2e-08 63.9 320 22.2


User provided reference genes

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