Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO351G0501 Selaginella moellendorffii HOM05D004769 ORTHO05D005605 6.2e-177 624.4 408 100.0
TAR375G0174 Trochodendron aralioides HOM05D004769 ORTHO05D005605 1.7e-110 403.7 418 59.6
Phvul.008G239200 Phaseolus vulgaris HOM05D004769 ORTHO05D005605 2.9e-110 402.9 228 81.6
VMungo0647G0921 Vigna mungo HOM05D004769 ORTHO05D005605 3.2e-109 399.4 230 80.9
ATR0083G043 Amborella trichopoda HOM05D004769 ORTHO05D005605 1.2e-108 397.5 427 63.5
Gohir.A08G052900 Gossypium hirsutum HOM05D004769 ORTHO05D005605 2.7e-108 396.4 230 80.0
Gorai.004G064700 Gossypium raimondii HOM05D004769 ORTHO05D005605 2.7e-108 396.4 230 80.0
Thecc.04G060900 Theobroma cacao HOM05D004769 ORTHO05D005605 4.7e-108 395.6 229 80.3
Glyma.14G211600 Glycine max HOM05D004769 ORTHO05D005605 5.2e-107 392.1 228 78.9
Gohir.D08G062500 Gossypium hirsutum HOM05D004769 ORTHO05D005605 5.2e-107 392.1 420 68.3
Lalb_Chr04g0251441 Lupinus albus HOM05D004769 ORTHO05D005605 6.7e-107 391.7 229 79.0
Prupe.1G069400 Prunus persica HOM05D004769 ORTHO05D005605 8.8e-107 391.3 229 79.9
Aqoxy5G00268 Aquilegia oxysepala HOM05D004769 ORTHO05D005605 1.1e-106 391.0 408 62.7
COL.COLO4_05842 Corchorus olitorius HOM05D004769 ORTHO05D005605 1.1e-106 391.0 408 56.4
Lalb_Chr17g0345901 Lupinus albus HOM05D004769 ORTHO05D005605 1.5e-106 390.6 252 73.4
PGR042G1215 Punica granatum HOM05D004769 ORTHO05D005605 2.6e-106 389.8 229 79.5
Atru.chr1.1954 Acer truncatum HOM05D004769 ORTHO05D005605 3.3e-106 389.4 229 79.0
Cpa.g.sc178.7 Carica papaya HOM05D004769 ORTHO05D005605 4.4e-106 389.0 229 77.7
Ca_05772_v3 Cicer arietinum L. HOM05D004769 ORTHO05D005605 4.4e-106 389.0 408 55.6
Medtr5g077180 Medicago truncatula HOM05D004769 ORTHO05D005605 4.4e-106 389.0 431 63.1
GSVIVG01026312001 Vitis vinifera HOM05D004769 ORTHO05D005605 1.3e-105 387.5 414 62.3
FAN22G0974 Fragaria x ananassa HOM05D004769 ORTHO05D005605 1.7e-105 387.1 229 79.0
Potri.017G144121 Populus trichocarpa HOM05D004769 ORTHO05D005605 1.7e-105 387.1 228 79.8
Cfa007768 Carpinus fangiana HOM05D004769 ORTHO05D005605 2.2e-105 386.7 252 72.6
FvH4_4g06670 Fragaria vesca HOM05D004769 ORTHO05D005605 2.2e-105 386.7 229 78.6
FAN12G3741 Fragaria x ananassa HOM05D004769 ORTHO05D005605 2.2e-105 386.7 229 78.6
RcHm_v2.0_Chr4g0398571 Rosa chinensis HOM05D004769 ORTHO05D005605 2.8e-105 386.3 229 79.0
CiPaw.03G077600 Carya illinoinensis HOM05D004769 ORTHO05D005605 3.7e-105 386.0 230 79.1
FAN07G0829 Fragaria x ananassa HOM05D004769 ORTHO05D005605 3.7e-105 386.0 229 78.6
Haze_14305 Corylus avellana HOM05D004769 ORTHO05D005605 4.8e-105 385.6 231 77.1
Sc11g0004750 Simmondsia chinensis HOM05D004769 ORTHO05D005605 4.8e-105 385.6 231 79.7
TPR.G9995 Trifolium pratense HOM05D004769 ORTHO05D005605 4.8e-105 385.6 228 78.5
TWI74G1557 Tripterygium wilfordii HOM05D004769 ORTHO05D005605 4.8e-105 385.6 229 78.6
MELO3C025080.2 Cucumis melo HOM05D004769 ORTHO05D005605 1.4e-104 384.0 230 78.7
CsaV3_5G020660 Cucumis sativus L. HOM05D004769 ORTHO05D005605 1.4e-104 384.0 230 78.7
FAN17G2568 Fragaria x ananassa HOM05D004769 ORTHO05D005605 1.4e-104 384.0 229 77.7
Hma1.2p1_0034F.1_g021310 Hydrangea macrophylla HOM05D004769 ORTHO05D005605 1.4e-104 384.0 228 79.4
CANSAT78G2338 Cannabis sativa HOM05D004769 ORTHO05D005605 1.8e-104 383.6 229 76.4
ClCG01G008650 Citrullus lanatus HOM05D004769 ORTHO05D005605 1.8e-104 383.6 230 78.3
MBI04_g35346_MAGBIO Magnolia biondii HOM05D004769 ORTHO05D005605 3.1e-104 382.9 427 63.7
SHI30114 Sapria himalayana HOM05D002544 ORTHO05D007856 3.1e-104 382.9 231 77.9
HPP92_017811 Vanilla planifolia HOM05D004769 ORTHO05D005605 4.1e-104 382.5 408 62.0
TWI77G0470 Tripterygium wilfordii HOM05D004769 ORTHO05D005605 7.0e-104 381.7 229 77.3
PSO017G5633 Papaver somniferum HOM05D004769 ORTHO05D005605 9.1e-104 381.3 445 60.0
Potri.004G075700 Populus trichocarpa HOM05D004769 ORTHO05D005605 1.2e-103 380.9 229 78.2
Sp7g05100 Schrenkiella parvula HOM05D004769 ORTHO05D005605 1.2e-103 380.9 408 55.9
Rhsim10G0183300 Rhododendron simsii HOM05D004769 ORTHO05D005605 2.6e-103 379.8 408 67.2
Pp3c14_14980 Physcomitrium patens HOM05D004769 ORTHO05D005605 5.9e-103 378.6 230 75.7
Pp3c14_14989 Physcomitrium patens HOM05D004769 ORTHO05D005605 5.9e-103 378.6 230 75.7
vmacro20487 Vaccinium macrocarpon HOM05D004769 ORTHO05D005605 5.9e-103 378.6 228 77.6
BolC4t25993H Brassica oleracea HOM05D004769 ORTHO05D005605 1.0e-102 377.9 408 58.3
Lsat_1_v5_gn_8_18601 Lactuca sativa HOM05D004769 ORTHO05D005605 1.0e-102 377.9 410 62.0
A04p10540 Brassica napus HOM05D004769 ORTHO05D005605 1.3e-102 377.5 408 62.0
C04p44180 Brassica napus HOM05D004769 ORTHO05D005605 1.7e-102 377.1 408 58.6
Sabra04G0050400 Salix brachista HOM05D004769 ORTHO05D005605 1.7e-102 377.1 236 76.7
arahy.Tifrunner.gnm1.ann1.SAK0JK Arachis hypogaea HOM05D004769 ORTHO05D005605 5.0e-102 375.6 249 71.9
Zm00001eb377290 Zea mays HOM05D004769 ORTHO05D005605 5.0e-102 375.6 410 53.4
THA.LOC104823824 Tarenaya hassleriana HOM05D004769 ORTHO05D005605 6.5e-102 375.2 414 62.8
Cc07_g12960 Coffea canephora HOM05D004769 ORTHO05D005605 1.1e-101 374.4 418 59.1
Actinidia35715 Actinidia chinensis HOM05D004769 ORTHO05D005605 1.9e-101 373.6 430 57.2
Glyma.02G241900 Glycine max HOM05D004769 ORTHO05D005605 1.9e-101 373.6 277 65.7
MapolyY_B0025 Marchantia polymorpha HOM05D004769 ORTHO05D005605 1.9e-101 373.6 228 77.2
Dinv19070 Davidia involucrata HOM05D004769 ORTHO05D005605 3.2e-101 372.9 438 59.1
Hma1.2p1_0158F.1_g069800 Hydrangea macrophylla HOM05D004769 ORTHO05D005605 5.5e-101 372.1 416 55.5
TAR374G1377 Trochodendron aralioides HOM05D004769 ORTHO05D005605 5.5e-101 372.1 421 60.1
Mapoly0017s0020 Marchantia polymorpha HOM05D004769 ORTHO05D005605 9.4e-101 371.3 225 76.9
BraA04t16720Z Brassica rapa HOM05D004769 ORTHO05D005605 1.2e-100 370.9 408 64.5
CSS0001926 Camellia sinensis var. sinensis HOM05D004769 ORTHO05D005605 1.2e-100 370.9 287 65.2
HanXRQChr08g0218471 Helianthus annuus HOM05D004769 ORTHO05D005605 2.7e-100 369.8 222 78.4
Lj2C513G15 Lonicera japonica HOM05D004769 ORTHO05D005605 6.1e-100 368.6 222 78.8
Carub.0007s3249 Capsella rubella HOM05D004769 ORTHO05D005605 8.0e-100 368.2 423 57.2
AUR62017457 Chenopodium quinoa HOM05D004769 ORTHO05D005605 1.4e-99 367.5 391 56.8
Sed0006929 Sechium edule HOM05D004769 ORTHO05D005605 1.4e-99 367.5 233 75.5
Thhalv10027788m.g Eutrema salsugineum HOM05D004769 ORTHO05D005605 2.3e-99 366.7 408 60.5
MD16G1242400 Malus domestica HOM05D004769 ORTHO05D005605 2.3e-99 366.7 211 81.0
MD13G1237000 Malus domestica HOM05D004769 ORTHO05D005605 4.0e-99 365.9 211 80.6
BcaC02g09560 Brassica carinata HOM05D004769 ORTHO05D005605 5.2e-99 365.5 406 57.1
AL7G46000 Arabidopsis lyrata HOM05D004769 ORTHO05D005605 1.2e-98 364.4 421 56.8
Os05g0178900 Oryza sativa ssp. japonica HOM05D004769 ORTHO05D005605 1.2e-98 364.4 441 59.9
EL10Ac6g13916 Beta vulgaris HOM05D004769 ORTHO05D005605 5.7e-98 362.1 477 49.7
SMO231G0026 Selaginella moellendorffii HOM05D004769 ORTHO05D005605 1.7e-97 360.5 401 76.8
Lj4A255T24 Lonicera japonica HOM05D004769 ORTHO05D005605 2.8e-97 359.8 222 76.6
Peaxi162Scf00442g00627 Petunia axillaris HOM05D004769 ORTHO05D005605 3.7e-97 359.4 229 72.9
ECA233G3826 Erigeron canadensis HOM05D000002 ORTHO05D000001 6.3e-97 358.6 401 57.4
AUR62032521 Chenopodium quinoa HOM05D004769 ORTHO05D005605 8.3e-97 358.2 391 50.4
CAN.G525.4 Capsicum annuum HOM05D004769 ORTHO05D005605 1.4e-96 357.5 230 72.6
SGA_v2.0_scaffold45G17131 Striga asiatica HOM05D004769 ORTHO05D005605 3.1e-96 356.3 225 75.6
unitig_748.g7024 Utricularia gibba HOM05D004769 ORTHO05D005605 3.1e-96 356.3 230 73.5
DCAR_028435 Daucus carota HOM05D004769 ORTHO05D005605 5.3e-96 355.5 224 76.8
MSTRG.3686 Avicennia marina HOM05D004769 ORTHO05D005605 1.2e-95 354.4 231 72.3
Nn1g02020 Nelumbo nucifera HOM05D004769 ORTHO05D005605 1.6e-95 354.0 207 78.7
SGA_v2.0_scaffold115G32089 Striga asiatica HOM05D004769 ORTHO05D005605 1.6e-95 354.0 231 73.6
Nitab4.5_0000574g0160 Nicotiana tabacum HOM05D004769 ORTHO05D005605 3.5e-95 352.8 229 71.6
Solyc04g014560.4 Solanum lycopersicum HOM05D004769 ORTHO05D005605 4.5e-95 352.4 229 72.1
PGSC0003DMG400023617 Solanum tuberosum HOM05D004769 ORTHO05D005605 4.5e-95 352.4 229 72.1
Sopen04g006720 Solanum pennellii HOM05D004769 ORTHO05D005605 5.9e-95 352.1 229 72.1
CBR_g22246 Chara braunii HOM05D004769 ORTHO05D005605 2.9e-94 349.7 230 73.5
Ah.02g128700 Amaranthus hybridus HOM05D004769 ORTHO05D005605 3.8e-94 349.4 294 60.2
Migut.H02243 Erythranthe guttata HOM05D004769 ORTHO05D005605 1.5e-93 347.4 427 53.9
QL02p060102 Quercus lobata HOM05D004769 ORTHO05D005605 4.7e-92 342.4 336 54.2
Migut.K01113 Erythranthe guttata HOM05D004769 ORTHO05D005605 8.0e-92 341.7 227 70.5
Oeu032315.1 Olea europaea HOM05D004769 ORTHO05D005605 2.0e-90 337.0 480 51.0
Oeu029083.1 Olea europaea HOM05D004769 ORTHO05D005605 2.4e-88 330.1 485 50.9
LjContig00141g0012428 Lotus japonicus HOM05D004769 ORTHO05D005605 7.7e-87 325.1 262 61.8
CARHR215720 Cardamine hirsuta HOM05D004769 ORTHO05D005605 4.0e-83 312.8 368 58.4
PSO170G3102 Papaver somniferum HOM05D004769 ORTHO05D005605 2.7e-79 300.1 387 55.8
Eucgr.J01630 Eucalyptus grandis HOM05D004769 ORTHO05D005605 2.3e-78 297.0 175 80.0
Pp3c17_5870 Physcomitrium patens HOM05D004769 ORTHO05D005605 4.0e-75 286.2 175 74.3
CDE02G3274 Ceratophyllum demersum HOM05D004769 ORTHO05D005605 8.3e-73 278.5 154 78.6
Lalb_Chr10g0104091 Lupinus albus HOM05D004769 ORTHO05D005605 4.3e-69 266.2 167 70.1
CDE02G0598 Ceratophyllum demersum HOM05D004769 ORTHO05D005605 3.0e-62 243.4 136 77.2
Cre03.g178300 Chlamydomonas reinhardtii HOM05D004769 ORTHO05D005605 1.5e-61 241.1 280 48.2
Ciclev10018227m.g Citrus clementina HOM05D004769 ORTHO05D005605 7.6e-58 228.8 144 72.9
MCO07G113 Micromonas commoda HOM05D004769 ORTHO05D005605 9.9e-58 228.4 219 50.2
PRCOL_00000163 Prasinoderma coloniale HOM05D004769 ORTHO05D005605 4.6e-55 219.5 205 51.7
SMO231G0020 Selaginella moellendorffii HOM05D004769 ORTHO05D005605 3.0e-54 216.9 154 70.8
Sed0026946 Sechium edule HOM05D004769 ORTHO05D005605 3.3e-53 213.4 135 74.1
SEGI_40758 Sequoiadendron giganteum HOM05D004769 ORTHO05D005605 9.6e-53 211.8 133 74.4
Dinv28230 Davidia involucrata HOM05D004769 ORTHO05D005605 2.8e-52 210.3 326 53.1
Lj1g0013060 Lotus japonicus HOM05D004769 ORTHO05D005605 2.6e-50 203.8 174 59.2
CDE02G1258 Ceratophyllum demersum HOM05D004769 ORTHO05D005605 2.1e-47 194.1 299 50.2
Nitab4.5_0005193g0040 Nicotiana tabacum HOM05D004769 ORTHO05D005605 2.1e-47 194.1 133 67.7
Oeu048972.1 Olea europaea HOM05D004769 ORTHO05D005605 2.1e-44 184.1 112 73.2
Zm00001eb283000 Zea mays HOM05D004769 ORTHO05D005605 8.1e-44 182.2 313 51.8
Sed0001997 Sechium edule HOM05D004769 ORTHO05D005605 9.0e-43 178.7 101 79.2
CSS0045560 Camellia sinensis var. sinensis HOM05D004769 ORTHO05D005605 1.7e-41 174.5 96 77.1
Duzib211G0206 Durio zibethinus HOM05D004769 ORTHO05D005605 1.9e-40 171.0 107 77.6
Ciclev10015797m.g Citrus clementina HOM05D004769 ORTHO05D005605 7.1e-40 169.1 148 61.5
Gohir.A02G124601 Gossypium hirsutum HOM05D004769 ORTHO05D005605 7.9e-39 165.6 96 78.1
Aa31LG9G17630 Aethionema arabicum HOM05D004769 ORTHO05D005605 1.7e-38 164.5 106 71.7
Zm00001eb361740 Zea mays HOM05D004769 ORTHO05D005605 3.6e-36 156.8 96 74.0
AT5G37370 Arabidopsis thaliana HOM05D004769 ORTHO05D005605 2.4e-35 154.1 281 51.2
Manes.02G080000 Manihot esculenta HOM05D004769 ORTHO05D005605 1.2e-34 151.8 95 80.0
Zm00001eb046660 Zea mays HOM05D004769 ORTHO05D005605 2.6e-34 150.6 84 79.8
Zm00001eb221230 Zea mays HOM05D004769 ORTHO05D005605 2.2e-33 147.5 83 79.5
Gohir.A11G193800 Gossypium hirsutum HOM05D004769 ORTHO05D005605 7.1e-32 142.5 85 77.6
HanXRQChr14g0429111 Helianthus annuus HOM05D004769 ORTHO05D005605 1.0e-30 138.7 80 80.0
Psat2g044720 Pisum sativum HOM05D004769 ORTHO05D005605 3.3e-29 133.7 88 76.1
HanXRQChr14g0429051 Helianthus annuus HOM05D004769 ORTHO05D005605 4.3e-29 133.3 80 77.5
MD01G1153700 Malus domestica HOM05D004769 ORTHO05D005605 1.2e-26 125.2 79 74.7
Lalb_Chr10g0104101 Lupinus albus HOM05D004769 ORTHO05D005605 2.9e-25 120.6 82 74.4
Gohir.A08G086562 Gossypium hirsutum HOM05D004769 ORTHO05D005605 1.1e-24 118.6 83 67.5
SMO351G0097 Selaginella moellendorffii HOM05D007698 ORTHO05D009663 1.2e-23 115.2 72 77.8
ATR0127G005 Amborella trichopoda HOM05D004769 ORTHO05D005605 7.4e-21 105.9 77 71.4
HanXRQChr08g0224021 Helianthus annuus HOM05D004769 ORTHO05D005605 1.2e-18 98.6 60 76.7
Lj2g0009880 Lotus japonicus HOM05D004769 ORTHO05D005605 1.0e-17 95.5 54 74.1
Lj1g0013083 Lotus japonicus HOM05D004769 ORTHO05D005605 2.5e-16 90.9 53 71.7
CDE02G3573 Ceratophyllum demersum HOM05D004769 ORTHO05D005605 7.9e-15 85.9 238 39.5
FAN05G2233 Fragaria x ananassa HOM05D004769 ORTHO05D005605 1.3e-14 85.1 54 81.5
CSS0036345 Camellia sinensis var. sinensis HOM05D004769 ORTHO05D005605 1.5e-13 81.6 61 68.9
AagrBONN_evm.TU.Sc2ySwM_344.2680 Anthoceros agrestis HOM05D004769 ORTHO05D005605 3.7e-12 77.0 236 52.1
FAN07G1815 Fragaria x ananassa HOM05D004769 ORTHO05D005605 1.4e-11 75.1 258 44.2
Zm00001eb313200 Zea mays HOM05D004769 ORTHO05D005605 1.2e-10 72.0 43 79.1


User provided reference genes

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