Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO351G0141 Selaginella moellendorffii HOM05D005168 ORTHO05D006358 1.5e-64 249.2 116 100.0
Pp3c24_7070 Physcomitrium patens HOM05D005168 ORTHO05D006358 4.5e-24 114.8 155 41.9
AagrBONN_evm.TU.Sc2ySwM_368.3393 Anthoceros agrestis HOM05D005168 ORTHO05D006358 1.0e-23 113.6 123 48.0
Nn3g19859 Nelumbo nucifera HOM05D005168 ORTHO05D006358 1.1e-22 110.2 116 47.4
Mapoly0043s0107 Marchantia polymorpha HOM05D005168 ORTHO05D006358 7.2e-22 107.5 125 48.0
SEGI_04309 Sequoiadendron giganteum HOM05D005168 ORTHO05D006358 7.2e-22 107.5 123 48.8
TAR622G0958 Trochodendron aralioides HOM05D005168 ORTHO05D006358 7.2e-22 107.5 116 46.6
CDE11G0347 Ceratophyllum demersum HOM05D005168 ORTHO05D006358 3.6e-21 105.1 116 45.7
Thhalv10019327m.g Eutrema salsugineum HOM05D005168 ORTHO05D006358 3.0e-20 102.1 108 43.5
Thhalv10009132m.g Eutrema salsugineum HOM05D005168 ORTHO05D006358 4.0e-20 101.7 108 43.5
Os03g0711700 Oryza sativa ssp. japonica HOM05D005168 ORTHO05D006358 8.8e-20 100.5 115 42.6
PSO541G4324 Papaver somniferum HOM05D005168 ORTHO05D006358 8.8e-20 100.5 116 43.1
PSO675G5410 Papaver somniferum HOM05D005168 ORTHO05D006358 8.8e-20 100.5 116 43.1
AL5G14600 Arabidopsis lyrata HOM05D005168 ORTHO05D006358 4.4e-19 98.2 108 42.6
BcaB03g14336 Brassica carinata HOM05D005168 ORTHO05D006358 4.4e-19 98.2 108 42.6
BcaB03g14344 Brassica carinata HOM05D005168 ORTHO05D006358 4.4e-19 98.2 108 42.6
C07p23400 Brassica napus HOM05D005168 ORTHO05D006358 4.4e-19 98.2 108 42.6
BolC7t42872H Brassica oleracea HOM05D005168 ORTHO05D006358 4.4e-19 98.2 108 42.6
CARHR020540 Cardamine hirsuta HOM05D005168 ORTHO05D006358 4.4e-19 98.2 108 42.6
AT3G25940 Arabidopsis thaliana HOM05D005168 ORTHO05D006358 9.7e-19 97.1 108 42.6
BcaB07g32021 Brassica carinata HOM05D005168 ORTHO05D006358 1.7e-18 96.3 108 42.6
A07p16030 Brassica napus HOM05D005168 ORTHO05D006358 1.7e-18 96.3 108 42.6
BraA07t29331Z Brassica rapa HOM05D005168 ORTHO05D006358 1.7e-18 96.3 108 42.6
Sp1g17830 Schrenkiella parvula HOM05D005168 ORTHO05D006358 1.7e-18 96.3 108 42.6
A06p16200 Brassica napus HOM05D005168 ORTHO05D006358 2.2e-18 95.9 108 41.7
BolC5t30566H Brassica oleracea HOM05D005168 ORTHO05D006358 2.8e-18 95.5 108 41.7
Carub.0005s0380 Capsella rubella HOM05D005168 ORTHO05D006358 2.8e-18 95.5 108 40.7
BcaC05g25900 Brassica carinata HOM05D005168 ORTHO05D006358 3.7e-18 95.1 108 41.7
C05p18550 Brassica napus HOM05D005168 ORTHO05D006358 3.7e-18 95.1 108 41.7
BraA06t24725Z Brassica rapa HOM05D005168 ORTHO05D006358 4.8e-18 94.7 108 40.7
TWI56G1449 Tripterygium wilfordii HOM05D005168 ORTHO05D006358 6.3e-18 94.4 106 40.6
CARHR146930 Cardamine hirsuta HOM05D005168 ORTHO05D006358 8.3e-18 94.0 108 39.8
CANSAT11G0916 Cannabis sativa HOM05D005168 ORTHO05D006358 1.8e-17 92.8 109 41.3
ATR0057G015 Amborella trichopoda HOM05D005168 ORTHO05D006358 2.4e-17 92.4 49 81.6
CDE09G0329 Ceratophyllum demersum HOM05D005168 ORTHO05D006358 2.4e-17 92.4 45 86.7
CiPaw.07G147200 Carya illinoinensis HOM05D005168 ORTHO05D006358 4.1e-17 91.7 106 41.5
Cpa.g.sc58.102 Carica papaya HOM05D005168 ORTHO05D006358 1.2e-16 90.1 113 41.6
Haze_22662 Corylus avellana HOM05D005168 ORTHO05D006358 1.6e-16 89.7 110 40.9
Gohir.A06G002600 Gossypium hirsutum HOM05D005168 ORTHO05D006358 1.6e-16 89.7 112 39.3
Gohir.D06G005600 Gossypium hirsutum HOM05D005168 ORTHO05D006358 1.6e-16 89.7 112 39.3
Gorai.010G002800 Gossypium raimondii HOM05D005168 ORTHO05D006358 1.6e-16 89.7 112 39.3
GSVIVG01009945001 Vitis vinifera HOM05D005168 ORTHO05D006358 1.6e-16 89.7 120 42.5
Psat5g045240 Pisum sativum HOM05D005168 ORTHO05D006358 2.7e-16 89.0 106 39.6
Cfa012889 Carpinus fangiana HOM05D005168 ORTHO05D006358 3.5e-16 88.6 106 39.6
Manes.14G063600 Manihot esculenta HOM05D005168 ORTHO05D006358 3.5e-16 88.6 107 39.3
CBR_g23850 Chara braunii HOM05D005168 ORTHO05D006358 4.5e-16 88.2 50 74.0
Haze_17776 Corylus avellana HOM05D005168 ORTHO05D006358 4.5e-16 88.2 110 40.9
QL01p031168 Quercus lobata HOM05D005168 ORTHO05D006358 5.9e-16 87.8 109 38.5
Lalb_Chr11g0067001 Lupinus albus HOM05D005168 ORTHO05D006358 7.7e-16 87.4 106 39.6
Thecc.08G047200 Theobroma cacao HOM05D005168 ORTHO05D006358 1.0e-15 87.0 112 38.4
Aa31LG4G6030 Aethionema arabicum HOM05D005168 ORTHO05D006358 1.7e-15 86.3 109 39.4
Ca_00384_v3 Cicer arietinum L. HOM05D005168 ORTHO05D006358 1.7e-15 86.3 106 38.7
Duzib093G1099 Durio zibethinus HOM05D005168 ORTHO05D006358 2.2e-15 85.9 113 39.8
ECA238G1857 Erigeron canadensis HOM05D005168 ORTHO05D006358 2.2e-15 85.9 116 39.7
THA.LOC104825467 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 2.2e-15 85.9 109 38.5
THA.LOC104825468 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 2.2e-15 85.9 109 38.5
HanXRQChr04g0101211 Helianthus annuus HOM05D005168 ORTHO05D006358 3.8e-15 85.1 116 40.5
Lj1g0018211 Lotus japonicus HOM05D005168 ORTHO05D006358 3.8e-15 85.1 106 38.7
Cre01.g018000 Chlamydomonas reinhardtii HOM05D005168 ORTHO05D006358 5.0e-15 84.7 50 74.0
THA.LOC104811420 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 5.0e-15 84.7 109 38.5
vmacro04368 Vaccinium macrocarpon HOM05D005168 ORTHO05D006358 5.0e-15 84.7 115 37.4
HPP92_028162 Vanilla planifolia HOM05D005168 ORTHO05D006358 5.0e-15 84.7 49 73.5
Medtr3g102420 Medicago truncatula HOM05D005168 ORTHO05D006358 6.5e-15 84.3 106 38.7
Phvul.001G175600 Phaseolus vulgaris HOM05D005168 ORTHO05D006358 1.5e-14 83.2 111 36.9
VMungo1080G1160 Vigna mungo HOM05D005168 ORTHO05D006358 1.5e-14 83.2 106 36.8
PGR031G0142 Punica granatum HOM05D005168 ORTHO05D006358 2.5e-14 82.4 106 36.8
Sc15g0004820 Simmondsia chinensis HOM05D005168 ORTHO05D006358 3.2e-14 82.0 122 38.5
Atru.chr1.3654 Acer truncatum HOM05D005168 ORTHO05D006358 7.2e-14 80.9 119 39.5
Hma1.2p1_0733F.1_g210170 Hydrangea macrophylla HOM05D005168 ORTHO05D006358 7.2e-14 80.9 111 36.0
Lsat_1_v5_gn_2_14120 Lactuca sativa HOM05D005168 ORTHO05D006358 7.2e-14 80.9 116 38.8
CSS0038486 Camellia sinensis var. sinensis HOM05D005168 ORTHO05D006358 9.4e-14 80.5 115 35.7
Glyma.03G178900 Glycine max HOM05D005168 ORTHO05D006358 9.4e-14 80.5 112 38.4
Actinidia37940 Actinidia chinensis HOM05D005168 ORTHO05D006358 1.2e-13 80.1 115 35.7
Rhsim07G0250400 Rhododendron simsii HOM05D005168 ORTHO05D006358 1.2e-13 80.1 111 38.7
SalBow8G1113 Salvia bowleyana HOM05D005168 ORTHO05D006358 2.1e-13 79.3 115 37.4
Potri.013G015000 Populus trichocarpa HOM05D005168 ORTHO05D006358 3.6e-13 78.6 110 34.5
CsaV3_2G024260 Cucumis sativus L. HOM05D005168 ORTHO05D006358 4.7e-13 78.2 106 35.8
MCO15G369 Micromonas commoda HOM05D005168 ORTHO05D006358 4.7e-13 78.2 133 35.3
MELO3C011355.2 Cucumis melo HOM05D005168 ORTHO05D006358 6.1e-13 77.8 106 36.8
MD08G1010500 Malus domestica HOM05D005168 ORTHO05D006358 6.1e-13 77.8 107 37.4
arahy.Tifrunner.gnm1.ann1.GU7A1M Arachis hypogaea HOM05D005168 ORTHO05D006358 8.0e-13 77.4 109 38.5
arahy.Tifrunner.gnm1.ann1.TKX6L5 Arachis hypogaea HOM05D005168 ORTHO05D006358 8.0e-13 77.4 109 38.5
MSTRG.22344 Avicennia marina HOM05D005168 ORTHO05D006358 8.0e-13 77.4 115 35.7
Ciclev10003775m.g Citrus clementina HOM05D005168 ORTHO05D006358 8.0e-13 77.4 115 36.5
Zm00001eb054840 Zea mays HOM05D005168 ORTHO05D006358 1.0e-12 77.0 103 36.9
Eucgr.C01258 Eucalyptus grandis HOM05D005168 ORTHO05D006358 1.8e-12 76.3 106 34.9
Hund09202 Selenicereus undatus HOM05D005168 ORTHO05D006358 1.8e-12 76.3 122 36.9
CSS0004439 Camellia sinensis var. sinensis HOM05D005168 ORTHO05D006358 2.3e-12 75.9 117 35.9
DCAR_015742 Daucus carota HOM05D005168 ORTHO05D006358 2.3e-12 75.9 112 34.8
Peaxi162Scf00553g00216 Petunia axillaris HOM05D005168 ORTHO05D006358 2.3e-12 75.9 115 33.0
Nitab4.5_0003251g0060 Nicotiana tabacum HOM05D005168 ORTHO05D006358 3.0e-12 75.5 115 33.0
Sed0007604 Sechium edule HOM05D005168 ORTHO05D006358 3.0e-12 75.5 110 38.2
SGA_v2.0_scaffold47G17500 Striga asiatica HOM05D005168 ORTHO05D006358 3.0e-12 75.5 115 33.0
Nitab4.5_0000337g0010 Nicotiana tabacum HOM05D005168 ORTHO05D006358 4.0e-12 75.1 115 35.7
Prupe.6G147400 Prunus persica HOM05D005168 ORTHO05D006358 4.0e-12 75.1 110 36.4
SGA_v2.0_scaffold19G08553 Striga asiatica HOM05D005168 ORTHO05D006358 4.0e-12 75.1 115 33.0
CAN.G727.4 Capsicum annuum HOM05D005168 ORTHO05D006358 6.8e-12 74.3 115 33.9
unitig_22.g6797 Utricularia gibba HOM05D005168 ORTHO05D006358 6.8e-12 74.3 115 32.2
Cc10_g01450 Coffea canephora HOM05D005168 ORTHO05D006358 8.8e-12 73.9 121 34.7
Eucgr.H00960 Eucalyptus grandis HOM05D005168 ORTHO05D006358 1.2e-11 73.6 106 34.0
Migut.N03173 Erythranthe guttata HOM05D005168 ORTHO05D006358 5.7e-11 71.2 115 33.0
Solyc04g054510.4 Solanum lycopersicum HOM05D005168 ORTHO05D006358 7.5e-11 70.9 115 32.2
PGSC0003DMG400022038 Solanum tuberosum HOM05D005168 ORTHO05D006358 7.5e-11 70.9 115 32.2
EL10Ac1g02165 Beta vulgaris HOM05D005168 ORTHO05D006358 1.7e-10 69.7 122 35.2
Aqoxy2G01931 Aquilegia oxysepala HOM05D005168 ORTHO05D006358 8.3e-10 67.4 122 34.4
Sopen04g024330 Solanum pennellii HOM05D005168 ORTHO05D006358 2.4e-09 65.9 109 31.2
Dinv40488 Davidia involucrata HOM05D005168 ORTHO05D006358 4.1e-09 65.1 105 35.2
FvH4_1g24780 Fragaria vesca HOM05D005168 ORTHO05D006358 1.6e-08 63.2 131 30.5
FAN23G3095 Fragaria x ananassa HOM05D005168 ORTHO05D006358 2.7e-08 62.4 131 30.5
BcaC05g25904 Brassica carinata HOM05D005168 ORTHO05D006358 1.3e-07 60.1 92 39.1
Ah.01g021000 Amaranthus hybridus HOM05D005168 ORTHO05D006358 1.7e-07 59.7 50 52.0
AUR62040557 Chenopodium quinoa HOM05D005168 ORTHO05D006358 1.7e-07 59.7 50 52.0
SHI17132 Sapria himalayana HOM05D005168 ORTHO05D006358 1.7e-07 59.7 68 39.7
AUR62041475 Chenopodium quinoa HOM05D005168 ORTHO05D006358 2.3e-07 59.3 50 52.0
Medtr5g030180 Medicago truncatula HOM05D006029 ORTHO05D007439 5.0e-07 58.2 121 29.8
TPR.G9182 Trifolium pratense HOM05D005168 ORTHO05D006358 1.1e-06 57.0 42 50.0
Glyma.08G246200 Glycine max HOM05D005168 ORTHO05D006358 1.5e-06 56.6 43 51.2
Lj4A21T59 Lonicera japonica HOM05D005168 ORTHO05D006358 1.5e-06 56.6 44 54.5
RcHm_v2.0_Chr2g0124111 Rosa chinensis HOM05D005168 ORTHO05D006358 4.2e-06 55.1 113 31.0
FAN26G0870 Fragaria x ananassa HOM05D005168 ORTHO05D006358 5.5e-06 54.7 39 53.8
SGA_v2.0_scaffold22G09953 Striga asiatica HOM05D006029 ORTHO05D007439 5.5e-06 54.7 111 31.5


User provided reference genes

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