Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO351G0117 Selaginella moellendorffii HOM05D004725 ORTHO05D005683 4.5e-121 438.0 223 100.0
SEGI_00745 Sequoiadendron giganteum HOM05D004725 ORTHO05D005683 1.1e-63 247.3 212 58.0
Mapoly0029s0136 Marchantia polymorpha HOM05D004725 ORTHO05D005683 2.6e-60 236.1 224 53.6
MBI18_g03518_MAGBIO Magnolia biondii HOM05D004725 ORTHO05D005683 9.8e-60 234.2 211 56.4
Pp3c12_20580 Physcomitrium patens HOM05D004725 ORTHO05D005683 2.2e-59 233.0 199 57.3
CDE02G0725 Ceratophyllum demersum HOM05D004725 ORTHO05D005683 1.9e-58 229.9 216 55.6
Nn3g21748 Nelumbo nucifera HOM05D004725 ORTHO05D005683 4.1e-58 228.8 221 52.5
TAR376G0735 Trochodendron aralioides HOM05D004725 ORTHO05D005683 3.3e-55 219.2 221 51.6
Aqoxy6G02121 Aquilegia oxysepala HOM05D004725 ORTHO05D005683 5.6e-55 218.4 209 54.1
GSVIVG01034975001 Vitis vinifera HOM05D004725 ORTHO05D005683 7.3e-55 218.0 221 52.5
Zm00001eb108600 Zea mays HOM05D004725 ORTHO05D005683 9.5e-55 217.6 216 52.8
Os05g0143400 Oryza sativa ssp. japonica HOM05D004725 ORTHO05D005683 2.1e-54 216.5 201 55.2
Oeu038772.1 Olea europaea HOM05D004725 ORTHO05D005683 1.8e-53 213.4 218 50.9
PGSC0003DMG400007347 Solanum tuberosum HOM05D004725 ORTHO05D005683 2.3e-53 213.0 209 51.7
Solyc11g065900.2 Solanum lycopersicum HOM05D004725 ORTHO05D005683 6.8e-53 211.5 209 51.7
Sopen11g025640 Solanum pennellii HOM05D004725 ORTHO05D005683 6.8e-53 211.5 209 51.7
SGA_v2.0_scaffold157G37322 Striga asiatica HOM05D004725 ORTHO05D005683 6.8e-53 211.5 218 50.9
Cc00_g03440 Coffea canephora HOM05D004725 ORTHO05D005683 8.9e-53 211.1 219 50.7
ECA236G4776 Erigeron canadensis HOM05D004725 ORTHO05D005683 2.0e-52 209.9 200 54.0
Peaxi162Scf00057g02232 Petunia axillaris HOM05D004725 ORTHO05D005683 4.4e-52 208.8 232 48.3
Lsat_1_v5_gn_8_139661 Lactuca sativa HOM05D004725 ORTHO05D005683 5.8e-52 208.4 223 49.8
DCAR_030461 Daucus carota HOM05D004725 ORTHO05D005683 7.5e-52 208.0 205 53.2
Nitab4.5_0000160g0190 Nicotiana tabacum HOM05D004725 ORTHO05D005683 7.5e-52 208.0 217 50.7
AagrBONN_evm.TU.Sc2ySwM_228.2917 Anthoceros agrestis HOM05D004725 ORTHO05D005683 1.3e-51 207.2 219 47.0
CSS0037380 Camellia sinensis var. sinensis HOM05D004725 ORTHO05D005683 2.2e-51 206.5 205 52.7
Migut.G00073 Erythranthe guttata HOM05D004725 ORTHO05D005683 2.2e-51 206.5 218 50.0
SalBow8G1743 Salvia bowleyana HOM05D004725 ORTHO05D005683 8.3e-51 204.5 218 48.6
BolC7t44486H Brassica oleracea HOM05D004725 ORTHO05D005683 1.1e-50 204.1 218 50.9
PSO782G1146 Papaver somniferum HOM05D004725 ORTHO05D005683 1.9e-50 203.4 203 51.2
PSO384G4206 Papaver somniferum HOM05D004725 ORTHO05D005683 2.4e-50 203.0 215 50.2
Carub.0008s0897 Capsella rubella HOM05D004725 ORTHO05D005683 3.2e-50 202.6 225 51.6
Sp2g19380 Schrenkiella parvula HOM05D004725 ORTHO05D005683 3.2e-50 202.6 206 53.9
A06p38630 Brassica napus HOM05D004725 ORTHO05D005683 7.1e-50 201.4 218 50.9
BraA06t26778Z Brassica rapa HOM05D004725 ORTHO05D005683 7.1e-50 201.4 218 50.9
C07p39630 Brassica napus HOM05D004725 ORTHO05D005683 9.2e-50 201.1 218 50.9
Thhalv10004892m.g Eutrema salsugineum HOM05D004725 ORTHO05D005683 1.2e-49 200.7 206 52.9
CARHR056790 Cardamine hirsuta HOM05D004725 ORTHO05D005683 2.1e-49 199.9 203 54.2
PSO063G5877 Papaver somniferum HOM05D004725 ORTHO05D005683 2.1e-49 199.9 215 50.2
AT5G49010 Arabidopsis thaliana HOM05D004725 ORTHO05D005683 3.5e-49 199.1 203 53.2
Carub.0008s0882 Capsella rubella HOM05D004725 ORTHO05D005683 4.6e-49 198.7 225 51.1
unitig_37.g12782 Utricularia gibba HOM05D004725 ORTHO05D005683 4.6e-49 198.7 220 49.1
MSTRG.3853 Avicennia marina HOM05D004725 ORTHO05D005683 6.0e-49 198.4 218 49.5
Dinv15152 Davidia involucrata HOM05D004725 ORTHO05D005683 7.8e-49 198.0 183 55.7
Lj3A833G37 Lonicera japonica HOM05D004725 ORTHO05D005683 1.0e-48 197.6 217 48.4
Actinidia31555 Actinidia chinensis HOM05D004725 ORTHO05D005683 1.3e-48 197.2 205 50.7
HanXRQChr17g0554971 Helianthus annuus HOM05D004725 ORTHO05D005683 1.3e-48 197.2 217 48.4
AL8G22680 Arabidopsis lyrata HOM05D004725 ORTHO05D005683 3.0e-48 196.1 203 52.7
Psat1g138600 Pisum sativum HOM05D004725 ORTHO05D005683 3.0e-48 196.1 225 48.4
HanXRQChr10g0291591 Helianthus annuus HOM05D004725 ORTHO05D005683 3.9e-48 195.7 217 47.5
ATR0691G022 Amborella trichopoda HOM05D004725 ORTHO05D005683 8.6e-48 194.5 189 55.0
Eucgr.D00314 Eucalyptus grandis HOM05D004725 ORTHO05D005683 8.6e-48 194.5 227 44.1
Oeu001165.1 Olea europaea HOM05D004725 ORTHO05D005683 1.5e-47 193.7 228 45.2
Sed0009995 Sechium edule HOM05D004725 ORTHO05D005683 2.5e-47 193.0 230 46.5
Aa31LG11G8130 Aethionema arabicum HOM05D004725 ORTHO05D005683 3.3e-47 192.6 203 52.2
THA.LOC104827096 Tarenaya hassleriana HOM05D004725 ORTHO05D005683 3.3e-47 192.6 203 52.2
VMungo0331G0107 Vigna mungo HOM05D004725 ORTHO05D005683 3.3e-47 192.6 221 46.6
Sc25g0003230 Simmondsia chinensis HOM05D004725 ORTHO05D005683 5.6e-47 191.8 199 50.8
AL8G22360 Arabidopsis lyrata HOM05D004725 ORTHO05D005683 1.2e-46 190.7 220 49.5
Phvul.010G140100 Phaseolus vulgaris HOM05D004725 ORTHO05D005683 1.2e-46 190.7 227 47.6
Nitab4.5_0002789g0040 Nicotiana tabacum HOM05D004725 ORTHO05D005683 2.8e-46 189.5 209 49.3
ClCG05G001400 Citrullus lanatus HOM05D004725 ORTHO05D005683 3.6e-46 189.1 230 45.2
TPR.G27119 Trifolium pratense HOM05D004725 ORTHO05D005683 4.7e-46 188.7 228 45.6
CiPaw.02G073900 Carya illinoinensis HOM05D004725 ORTHO05D005683 6.2e-46 188.3 217 45.6
CANSAT35G1772 Cannabis sativa HOM05D004725 ORTHO05D005683 1.4e-45 187.2 219 45.2
CsaV3_3G008790 Cucumis sativus L. HOM05D004725 ORTHO05D005683 2.3e-45 186.4 230 44.3
Potri.008G103800 Populus trichocarpa HOM05D004725 ORTHO05D005683 5.2e-45 185.3 200 49.0
Manes.03G206000 Manihot esculenta HOM05D004725 ORTHO05D005683 6.8e-45 184.9 200 49.5
Sabra08G0078400 Salix brachista HOM05D004725 ORTHO05D005683 6.8e-45 184.9 218 46.8
Lj3g0003769 Lotus japonicus HOM05D004725 ORTHO05D005683 8.9e-45 184.5 205 45.9
Glyma.08G194400 Glycine max HOM05D004725 ORTHO05D005683 2.6e-44 183.0 205 47.3
BcaC06g30733 Brassica carinata HOM05D004725 ORTHO05D005683 5.8e-44 181.8 172 55.8
FAN07G1636 Fragaria x ananassa HOM05D004725 ORTHO05D005683 5.8e-44 181.8 232 44.8
QL06p012630 Quercus lobata HOM05D004725 ORTHO05D005683 7.6e-44 181.4 172 52.9
TWI09G0594 Tripterygium wilfordii HOM05D004725 ORTHO05D005683 9.9e-44 181.0 218 47.2
RcHm_v2.0_Chr4g0425721 Rosa chinensis HOM05D004725 ORTHO05D005683 1.3e-43 180.6 234 44.0
CBR_g34308 Chara braunii HOM05D004725 ORTHO05D005683 1.7e-43 180.3 218 41.3
FvH4_4g13700 Fragaria vesca HOM05D004725 ORTHO05D005683 3.8e-43 179.1 232 44.4
CSS0018454 Camellia sinensis var. sinensis HOM05D004725 ORTHO05D005683 6.4e-43 178.3 203 47.3
Gohir.A10G173400 Gossypium hirsutum HOM05D004725 ORTHO05D005683 1.9e-42 176.8 226 44.7
Glyma.07G011200 Glycine max HOM05D004725 ORTHO05D005683 7.1e-42 174.9 192 47.4
SHI00123 Sapria himalayana HOM05D004725 ORTHO05D005683 7.1e-42 174.9 208 45.2
Ciclev10005849m.g Citrus clementina HOM05D004725 ORTHO05D005683 1.6e-41 173.7 216 44.9
Gohir.D10G179900 Gossypium hirsutum HOM05D004725 ORTHO05D005683 1.6e-41 173.7 226 44.2
SalBow6G0528 Salvia bowleyana HOM05D004725 ORTHO05D005683 1.6e-41 173.7 218 44.5
Gorai.011G201500 Gossypium raimondii HOM05D004725 ORTHO05D005683 2.1e-41 173.3 227 44.1
Medtr2g044210 Medicago truncatula HOM05D004725 ORTHO05D005683 6.0e-41 171.8 190 49.5
Thecc.04G302700 Theobroma cacao HOM05D004725 ORTHO05D005683 6.0e-41 171.8 226 43.4
COL.COLO4_09634 Corchorus olitorius HOM05D004725 ORTHO05D005683 1.3e-40 170.6 225 43.6
HPP92_027744 Vanilla planifolia HOM05D004725 ORTHO05D005683 5.1e-40 168.7 173 49.7
arahy.Tifrunner.gnm1.ann1.ASV3U0 Arachis hypogaea HOM05D004725 ORTHO05D005683 6.6e-40 168.3 248 40.7
GSVIVG01034912001 Vitis vinifera HOM05D004725 ORTHO05D005683 6.6e-40 168.3 198 47.5
MELO3C006096.2 Cucumis melo HOM05D004725 ORTHO05D005683 1.5e-39 167.2 245 40.4
PGR031G0191 Punica granatum HOM05D004725 ORTHO05D005683 1.9e-39 166.8 213 45.1
vmacro08028 Vaccinium macrocarpon HOM05D004725 ORTHO05D005683 4.3e-39 165.6 233 44.6
Duzib212G0103 Durio zibethinus HOM05D004725 ORTHO05D005683 5.6e-39 165.2 226 43.4
COL.COLO4_34597 Corchorus olitorius HOM05D004725 ORTHO05D005683 2.1e-38 163.3 190 46.3
Prupe.1G115500 Prunus persica HOM05D004725 ORTHO05D005683 2.8e-38 162.9 175 46.9
CAN.G598.3 Capsicum annuum HOM05D004725 ORTHO05D005683 8.1e-38 161.4 152 55.3
Ah.13g071340 Amaranthus hybridus HOM05D004725 ORTHO05D005683 3.1e-37 159.5 205 43.4
Rhsim05G0134600 Rhododendron simsii HOM05D004725 ORTHO05D005683 3.1e-37 159.5 291 37.1
BcaC06g30731 Brassica carinata HOM05D004725 ORTHO05D005683 2.0e-36 156.8 147 57.1
Ca_09654_v3 Cicer arietinum L. HOM05D004725 ORTHO05D005683 2.0e-36 156.8 176 48.3
FAN12G0808 Fragaria x ananassa HOM05D004725 ORTHO05D005683 9.9e-36 154.5 232 41.4
CARHR182700 Cardamine hirsuta HOM05D004725 ORTHO05D005683 4.2e-34 149.1 188 45.7
MD13G1151200 Malus domestica HOM05D004725 ORTHO05D005683 1.6e-33 147.1 201 44.8
Haze_01314 Corylus avellana HOM05D004725 ORTHO05D005683 3.5e-33 146.0 158 48.1
AUR62039263 Chenopodium quinoa HOM05D004725 ORTHO05D005683 3.0e-32 142.9 207 40.1
FAN12G0673 Fragaria x ananassa HOM05D004725 ORTHO05D005683 2.5e-31 139.8 244 38.1
Rhsim04G0240300 Rhododendron simsii HOM05D004725 ORTHO05D005683 4.3e-31 139.0 263 38.0
arahy.Tifrunner.gnm1.ann1.NMZ4WG Arachis hypogaea HOM05D004725 ORTHO05D005683 4.0e-29 132.5 333 30.6
HPP92_026068 Vanilla planifolia HOM05D004725 ORTHO05D005683 9.0e-29 131.3 116 54.3
Dinv44275 Davidia involucrata HOM05D004725 ORTHO05D005683 4.5e-28 129.0 138 51.4
MCO14G052 Micromonas commoda HOM05D004725 ORTHO05D005683 6.4e-27 125.2 216 37.0
EL10Ac3g05524 Beta vulgaris HOM05D004725 ORTHO05D005683 1.6e-25 120.6 225 36.4
Hma1.2p1_0013F.1_g008380 Hydrangea macrophylla HOM05D004725 ORTHO05D005683 1.6e-25 120.6 130 46.9
Atru.chr4.3042 Acer truncatum HOM05D004725 ORTHO05D005683 7.9e-25 118.2 129 48.8
Cpa.g.sc9.42 Carica papaya HOM05D004725 ORTHO05D005683 3.9e-24 115.9 157 44.6
Lalb_Chr20g0110441 Lupinus albus HOM05D004725 ORTHO05D005683 1.5e-23 114.0 135 48.1
MD16G1152100 Malus domestica HOM05D004725 ORTHO05D005683 7.4e-23 111.7 152 44.7
Cre09.g393600 Chlamydomonas reinhardtii HOM05D004725 ORTHO05D005683 9.6e-23 111.3 218 31.7
Ca_02282_v3 Cicer arietinum L. HOM05D004725 ORTHO05D005683 1.3e-22 110.9 106 52.8
FAN07G0549 Fragaria x ananassa HOM05D004725 ORTHO05D005683 2.1e-22 110.2 145 43.4
FvH4_4g20000 Fragaria vesca HOM05D004725 ORTHO05D005683 3.4e-20 102.8 164 40.2
Potri.010G147050 Populus trichocarpa HOM05D004725 ORTHO05D005683 7.6e-20 101.7 209 34.4
HPP92_026067 Vanilla planifolia HOM05D004725 ORTHO05D005683 6.7e-16 88.6 89 50.6
CSS0006068 Camellia sinensis var. sinensis HOM05D004725 ORTHO05D005683 3.3e-15 86.3 87 50.6
FAN22G2356 Fragaria x ananassa HOM05D004725 ORTHO05D005683 6.2e-14 82.0 92 48.9
CAN.G327.11 Capsicum annuum HOM05D004725 ORTHO05D005683 2.4e-13 80.1 158 32.9
PRCOL_00004769 Prasinoderma coloniale HOM05D004725 ORTHO05D005683 3.1e-13 79.7 231 28.1
AUR62016226 Chenopodium quinoa HOM05D004725 ORTHO05D005683 2.0e-12 77.0 199 30.7
RcHm_v2.0_Chr7g0210081 Rosa chinensis HOM05D004725 ORTHO05D005683 1.7e-11 73.9 99 41.4
RcHm_v2.0_Chr6g0255221 Rosa chinensis HOM05D004725 ORTHO05D005683 3.8e-11 72.8 84 48.8
Zm00001eb143530 Zea mays HOM05D004725 ORTHO05D005683 4.9e-11 72.4 89 46.1
Lalb_Chr20g0115601 Lupinus albus HOM05D004725 ORTHO05D005683 6.5e-11 72.0 99 42.4
Zm00001eb401350 Zea mays HOM05D004725 ORTHO05D005683 6.5e-11 72.0 89 46.1
Actinidia18458 Actinidia chinensis HOM05D004725 ORTHO05D005683 3.2e-10 69.7 54 63.0
CARHR287810 Cardamine hirsuta HOM05D004725 ORTHO05D005683 9.3e-10 68.2 163 33.7
Zm00001eb228430 Zea mays HOM05D004725 ORTHO05D005683 3.3e-07 59.7 90 42.2
Atru.chr3.3242 Acer truncatum HOM05D004725 ORTHO05D005683 5.7e-07 58.9 196 25.0
TWI73G0983 Tripterygium wilfordii HOM05D004725 ORTHO05D005683 9.6e-07 58.2 66 48.5


User provided reference genes

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