Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO347G0200 Selaginella moellendorffii HOM05D005621 ORTHO05D007248 3.5e-21 104.0 51 100.0
AL4G29560 Arabidopsis lyrata HOM05D005621 ORTHO05D007248 2.7e-13 77.8 51 72.5
AT2G33800 Arabidopsis thaliana HOM05D005621 ORTHO05D007248 2.7e-13 77.8 51 72.5
Carub.0004s1547 Capsella rubella HOM05D005621 ORTHO05D007248 2.7e-13 77.8 51 72.5
CARHR127910 Cardamine hirsuta HOM05D005621 ORTHO05D007248 2.7e-13 77.8 51 72.5
Lalb_Chr09g0327691 Lupinus albus HOM05D005621 ORTHO05D007248 2.7e-13 77.8 51 72.5
Lalb_Chr16g0383871 Lupinus albus HOM05D005621 ORTHO05D007248 3.5e-13 77.4 51 72.5
MSTRG.14706 Avicennia marina HOM05D005621 ORTHO05D007248 4.6e-13 77.0 51 72.5
Hma1.2p1_0208F.1_g088250 Hydrangea macrophylla HOM05D005621 ORTHO05D007248 4.6e-13 77.0 51 72.5
Lj4g0015429 Lotus japonicus HOM05D005621 ORTHO05D007248 4.6e-13 77.0 51 72.5
Medtr4g088615 Medicago truncatula HOM05D005621 ORTHO05D007248 4.6e-13 77.0 51 70.6
Sp4g16190 Schrenkiella parvula HOM05D005621 ORTHO05D007248 4.6e-13 77.0 51 72.5
Solyc02g077990.3 Solanum lycopersicum HOM05D005621 ORTHO05D007248 4.6e-13 77.0 51 72.5
Sopen02g022830 Solanum pennellii HOM05D005621 ORTHO05D007248 4.6e-13 77.0 51 72.5
PGSC0003DMG400029704 Solanum tuberosum HOM05D005621 ORTHO05D007248 4.6e-13 77.0 51 72.5
TWI63G1165 Tripterygium wilfordii HOM05D005621 ORTHO05D007248 4.6e-13 77.0 51 72.5
Aa31sc652G50 Aethionema arabicum HOM05D005621 ORTHO05D007248 6.0e-13 76.6 51 72.5
Aa31sc652G80 Aethionema arabicum HOM05D005621 ORTHO05D007248 6.0e-13 76.6 51 72.5
Nitab4.5_0005745g0010 Nicotiana tabacum HOM05D005621 ORTHO05D007248 6.0e-13 76.6 51 72.5
Nitab4.5_0013984g0010 Nicotiana tabacum HOM05D005621 ORTHO05D007248 6.0e-13 76.6 51 72.5
Rhsim02G0132300 Rhododendron simsii HOM05D005621 ORTHO05D007248 6.0e-13 76.6 51 70.6
ATR0217G013 Amborella trichopoda HOM05D005621 ORTHO05D007248 7.8e-13 76.3 51 72.5
SGA_v2.0_scaffold109G31092 Striga asiatica HOM05D005621 ORTHO05D007248 7.8e-13 76.3 51 72.5
DCAR_004062 Daucus carota HOM05D005621 ORTHO05D007248 1.0e-12 75.9 51 72.5
ECA236G3692 Erigeron canadensis HOM05D005621 ORTHO05D007248 1.0e-12 75.9 51 72.5
Migut.H01481 Erythranthe guttata HOM05D005621 ORTHO05D007248 1.0e-12 75.9 51 70.6
Glyma.07G198500 Glycine max HOM05D005621 ORTHO05D007248 1.0e-12 75.9 51 70.6
Lj2A290T34 Lonicera japonica HOM05D005621 ORTHO05D007248 1.0e-12 75.9 51 70.6
Nitab4.5_0012909g0010 Nicotiana tabacum HOM05D005621 ORTHO05D007248 1.0e-12 75.9 51 72.5
PGR004G2009 Punica granatum HOM05D005621 ORTHO05D007248 1.0e-12 75.9 51 72.5
unitig_0.g964 Utricularia gibba HOM05D005621 ORTHO05D007248 1.0e-12 75.9 51 70.6
VMungo0251G0522 Vigna mungo HOM05D005621 ORTHO05D007248 1.0e-12 75.9 51 70.6
BcaC02g07768 Brassica carinata HOM05D005621 ORTHO05D007248 1.3e-12 75.5 51 72.5
A04p26030 Brassica napus HOM05D005621 ORTHO05D007248 1.3e-12 75.5 51 72.5
C04p63370 Brassica napus HOM05D005621 ORTHO05D007248 1.3e-12 75.5 51 72.5
BolC4t27812H Brassica oleracea HOM05D005621 ORTHO05D007248 1.3e-12 75.5 51 72.5
BraA04t18105Z Brassica rapa HOM05D005621 ORTHO05D007248 1.3e-12 75.5 51 72.5
CSS0032010 Camellia sinensis var. sinensis HOM05D005621 ORTHO05D007248 1.3e-12 75.5 51 72.5
CAN.G529.17 Capsicum annuum HOM05D005621 ORTHO05D007248 1.3e-12 75.5 51 70.6
Dinv17326 Davidia involucrata HOM05D005621 ORTHO05D007248 1.3e-12 75.5 51 68.6
Oeu029361.1 Olea europaea HOM05D005621 ORTHO05D007248 1.3e-12 75.5 51 70.6
SalBow7G0434 Salvia bowleyana HOM05D005621 ORTHO05D007248 1.3e-12 75.5 51 70.6
SalBow7G3926 Salvia bowleyana HOM05D005621 ORTHO05D007248 1.3e-12 75.5 51 70.6
Glyma.13G177900 Glycine max HOM05D005621 ORTHO05D007248 1.7e-12 75.1 51 68.6
Sed0019345 Sechium edule HOM05D005621 ORTHO05D007248 1.7e-12 75.1 51 68.6
ClCG01G023060 Citrullus lanatus HOM05D005621 ORTHO05D007248 2.3e-12 74.7 51 68.6
HanXRQChr09g0253381 Helianthus annuus HOM05D005621 ORTHO05D007248 2.3e-12 74.7 51 70.6
EL10Ac8g20402 Beta vulgaris HOM05D005621 ORTHO05D007248 3.0e-12 74.3 51 68.6
TPR.G16335 Trifolium pratense HOM05D005621 ORTHO05D007248 3.0e-12 74.3 51 68.6
Actinidia16560 Actinidia chinensis HOM05D005621 ORTHO05D007248 3.9e-12 73.9 51 70.6
AUR62014837 Chenopodium quinoa HOM05D005621 ORTHO05D007248 3.9e-12 73.9 51 70.6
AUR62017033 Chenopodium quinoa HOM05D005621 ORTHO05D007248 3.9e-12 73.9 51 70.6
Ca_18557_v3 Cicer arietinum L. HOM05D005621 ORTHO05D007248 3.9e-12 73.9 51 68.6
COL.COLO4_31445 Corchorus olitorius HOM05D005621 ORTHO05D007248 3.9e-12 73.9 51 68.6
Gohir.A06G211100 Gossypium hirsutum HOM05D005621 ORTHO05D007248 3.9e-12 73.9 51 68.6
Gohir.D05G163500 Gossypium hirsutum HOM05D005621 ORTHO05D007248 3.9e-12 73.9 51 68.6
Gohir.D06G210100 Gossypium hirsutum HOM05D005621 ORTHO05D007248 3.9e-12 73.9 51 68.6
Gorai.010G256400 Gossypium raimondii HOM05D005621 ORTHO05D007248 3.9e-12 73.9 51 68.6
Peaxi162Scf02261g00011 Petunia axillaris HOM05D005621 ORTHO05D007248 3.9e-12 73.9 51 66.7
Hund21218 Selenicereus undatus HOM05D005621 ORTHO05D007248 3.9e-12 73.9 51 70.6
Sc05g0007560 Simmondsia chinensis HOM05D005621 ORTHO05D007248 3.9e-12 73.9 51 68.6
THA.LOC104814219 Tarenaya hassleriana HOM05D005621 ORTHO05D007248 3.9e-12 73.9 51 70.6
Atru.chr10.1848 Acer truncatum HOM05D005621 ORTHO05D007248 5.1e-12 73.6 51 68.6
CDE02G0355 Ceratophyllum demersum HOM05D005621 ORTHO05D007248 5.1e-12 73.6 51 70.6
CDE05G0202 Ceratophyllum demersum HOM05D005621 ORTHO05D007248 5.1e-12 73.6 51 70.6
MELO3C007277.2 Cucumis melo HOM05D005621 ORTHO05D007248 5.1e-12 73.6 51 66.7
CsaV3_6G050190 Cucumis sativus L. HOM05D005621 ORTHO05D007248 5.1e-12 73.6 51 66.7
Gohir.A05G160800 Gossypium hirsutum HOM05D005621 ORTHO05D007248 5.1e-12 73.6 51 68.6
Gorai.009G168600 Gossypium raimondii HOM05D005621 ORTHO05D007248 5.1e-12 73.6 51 66.7
Thecc.06G184600 Theobroma cacao HOM05D005621 ORTHO05D007248 5.1e-12 73.6 51 68.6
CANSAT35G1861 Cannabis sativa HOM05D005621 ORTHO05D007248 6.6e-12 73.2 50 68.0
Cc02_g13570 Coffea canephora HOM05D005621 ORTHO05D007248 6.6e-12 73.2 51 68.6
MD00G1115700 Malus domestica HOM05D005621 ORTHO05D007248 6.6e-12 73.2 51 68.6
MD10G1292500 Malus domestica HOM05D005621 ORTHO05D007248 6.6e-12 73.2 51 68.6
Nn1g06478 Nelumbo nucifera HOM05D005621 ORTHO05D007248 6.6e-12 73.2 51 68.6
Aqoxy1G02371 Aquilegia oxysepala HOM05D005621 ORTHO05D007248 8.7e-12 72.8 51 66.7
Duzib235G0013 Durio zibethinus HOM05D005621 ORTHO05D007248 8.7e-12 72.8 51 66.7
FvH4_3g08970 Fragaria vesca HOM05D005621 ORTHO05D007248 8.7e-12 72.8 51 70.6
FAN11G2270 Fragaria x ananassa HOM05D005621 ORTHO05D007248 8.7e-12 72.8 51 70.6
FAN16G3294 Fragaria x ananassa HOM05D005621 ORTHO05D007248 8.7e-12 72.8 51 70.6
Psat7g115360 Pisum sativum HOM05D005621 ORTHO05D007248 8.7e-12 72.8 51 66.7
RcHm_v2.0_Chr5g0008741 Rosa chinensis HOM05D005621 ORTHO05D007248 8.7e-12 72.8 51 70.6
Cfa000492 Carpinus fangiana HOM05D005621 ORTHO05D007248 1.1e-11 72.4 51 68.6
CiPaw.09G061400 Carya illinoinensis HOM05D005621 ORTHO05D007248 1.1e-11 72.4 51 68.6
Haze_06422 Corylus avellana HOM05D005621 ORTHO05D007248 1.1e-11 72.4 51 68.6
Dinv40577 Davidia involucrata HOM05D005621 ORTHO05D007248 1.1e-11 72.4 51 64.7
MBI18_g13183_MAGBIO Magnolia biondii HOM05D005621 ORTHO05D007248 1.1e-11 72.4 51 68.6
Phvul.002G229700 Phaseolus vulgaris HOM05D005621 ORTHO05D007248 1.1e-11 72.4 51 68.6
QL05p041319 Quercus lobata HOM05D005621 ORTHO05D007248 1.1e-11 72.4 50 66.0
Ah.09g237450 Amaranthus hybridus HOM05D005621 ORTHO05D007248 1.5e-11 72.0 51 66.7
Ah.14g089540 Amaranthus hybridus HOM05D005621 ORTHO05D007248 1.5e-11 72.0 51 66.7
SEGI_11788 Sequoiadendron giganteum HOM05D005621 ORTHO05D007248 1.5e-11 72.0 51 64.7
Mapoly0008s0189 Marchantia polymorpha HOM05D005621 ORTHO05D007248 1.9e-11 71.6 51 66.7
Eucgr.D00609 Eucalyptus grandis HOM05D005621 ORTHO05D007248 2.5e-11 71.2 51 68.6
Ciclev10016057m.g Citrus clementina HOM05D005621 ORTHO05D007248 3.3e-11 70.9 51 64.7
Potri.004G045700 Populus trichocarpa HOM05D005621 ORTHO05D007248 3.3e-11 70.9 51 68.6
Prupe.4G049400 Prunus persica HOM05D005621 ORTHO05D007248 3.3e-11 70.9 51 64.7
Sabra04G0028500 Salix brachista HOM05D005621 ORTHO05D007248 3.3e-11 70.9 51 68.6
vmacro15918 Vaccinium macrocarpon HOM05D005621 ORTHO05D007248 3.3e-11 70.9 51 64.7
Cpa.g.sc464.3 Carica papaya HOM05D005621 ORTHO05D007248 5.6e-11 70.1 51 66.7
AagrBONN_evm.TU.Sc2ySwM_344.1949 Anthoceros agrestis HOM05D005621 ORTHO05D007248 7.3e-11 69.7 51 64.7
Lsat_1_v5_gn_7_21701 Lactuca sativa HOM05D005621 ORTHO05D007248 9.6e-11 69.3 48 70.8
Manes.16G029300 Manihot esculenta HOM05D005621 ORTHO05D007248 1.3e-10 68.9 51 64.7
PSO541G5241 Papaver somniferum HOM05D005621 ORTHO05D007248 1.3e-10 68.9 51 68.6
PSO675G9131 Papaver somniferum HOM05D005621 ORTHO05D007248 1.3e-10 68.9 51 68.6
HPP92_014186 Vanilla planifolia HOM05D005621 ORTHO05D007248 1.6e-10 68.6 51 66.7
Pp3c11_10680 Physcomitrium patens HOM05D005621 ORTHO05D007248 2.1e-10 68.2 51 60.8
Pp3c1_5050 Physcomitrium patens HOM05D005621 ORTHO05D007248 2.1e-10 68.2 51 60.8
Pp3c7_18380 Physcomitrium patens HOM05D005621 ORTHO05D007248 2.1e-10 68.2 51 60.8
Os03g0452300 Oryza sativa ssp. japonica HOM05D005621 ORTHO05D007248 3.6e-10 67.4 51 62.7
Zm00001eb043240 Zea mays HOM05D005621 ORTHO05D007248 8.1e-10 66.2 50 62.0
Cc02_g13560 Coffea canephora HOM05D005621 ORTHO05D007248 1.1e-09 65.9 51 60.8
CSS0035615 Camellia sinensis var. sinensis HOM05D005621 ORTHO05D007248 4.0e-09 63.9 51 64.7
AL4G11520 Arabidopsis lyrata HOM05D005621 ORTHO05D007248 9.0e-09 62.8 51 66.7
CBR_g50385 Chara braunii HOM05D005621 ORTHO05D007248 4.4e-08 60.5 52 53.8
TAR626G1297 Trochodendron aralioides HOM05D005621 ORTHO05D007248 1.9e-06 55.1 48 54.2


User provided reference genes

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