Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO347G0172 Selaginella moellendorffii HOM05D001620 ORTHO05D003132 8.3e-126 453.8 235 100.0
SMO347G0066 Selaginella moellendorffii HOM05D001620 ORTHO05D005461 3.3e-21 106.3 169 34.9
Potri.007G134300 Populus trichocarpa HOM05D001620 ORTHO05D005461 4.6e-15 85.9 179 33.5
Hund03188 Selenicereus undatus HOM05D001620 ORTHO05D005461 5.9e-15 85.5 175 33.1
SMO347G0380 Selaginella moellendorffii HOM05D001620 ORTHO05D003132 2.5e-13 80.1 203 26.6
Mapoly0033s0149 Marchantia polymorpha HOM05D001620 ORTHO05D003132 1.2e-12 77.8 165 30.9
unitig_85.g27224 Utricularia gibba HOM05D004939 ORTHO05D005843 6.2e-12 75.5 175 30.3
Sed0027002 Sechium edule HOM05D001620 ORTHO05D005461 8.0e-12 75.1 224 28.6
Lsat_1_v5_gn_3_109820 Lactuca sativa HOM05D001620 ORTHO05D005461 1.0e-11 74.7 172 30.2
Prupe.1G201600 Prunus persica HOM05D001620 ORTHO05D005461 1.0e-11 74.7 172 29.7
Mapoly0001s0141 Marchantia polymorpha HOM05D001620 ORTHO05D003132 2.3e-11 73.6 140 32.1
ATR0605G201 Amborella trichopoda HOM05D001620 ORTHO05D005461 4.0e-11 72.8 167 29.3
SalBow6G2343 Salvia bowleyana HOM05D001620 ORTHO05D005461 4.0e-11 72.8 178 31.5
ClCG02G003250 Citrullus lanatus HOM05D001620 ORTHO05D005461 8.9e-11 71.6 180 30.0
CsaV3_7G002140 Cucumis sativus L. HOM05D001620 ORTHO05D005461 8.9e-11 71.6 181 28.7
Dinv44168 Davidia involucrata HOM05D001620 ORTHO05D005461 1.5e-10 70.9 172 31.4
Sc19g0002780 Simmondsia chinensis HOM05D001620 ORTHO05D005461 2.0e-10 70.5 175 29.1
Ciclev10021852m.g Citrus clementina HOM05D001620 ORTHO05D005461 2.6e-10 70.1 158 31.0
SEGI_37669 Sequoiadendron giganteum HOM05D001620 ORTHO05D005461 2.6e-10 70.1 171 28.1
MSTRG.22018 Avicennia marina HOM05D001620 ORTHO05D005461 4.4e-10 69.3 163 31.3
Psat7g211240 Pisum sativum HOM05D001620 ORTHO05D003132 5.8e-10 68.9 135 31.1
Migut.N03083 Erythranthe guttata HOM05D001620 ORTHO05D005461 9.8e-10 68.2 158 31.0
Aqoxy5G00121 Aquilegia oxysepala HOM05D001620 ORTHO05D003132 1.3e-09 67.8 135 31.9
CiPaw.05G094900 Carya illinoinensis HOM05D001620 ORTHO05D005461 2.2e-09 67.0 157 27.4
Ca_20610_v3 Cicer arietinum L. HOM05D001620 ORTHO05D003132 2.9e-09 66.6 135 29.6
Ca_29564_v3 Cicer arietinum L. HOM05D001620 ORTHO05D003132 2.9e-09 66.6 135 29.6
TPR.G23569 Trifolium pratense HOM05D001620 ORTHO05D003132 3.7e-09 66.2 135 28.9
CANSAT54G0541 Cannabis sativa HOM05D001620 ORTHO05D003132 4.9e-09 65.9 135 30.4
CiPaw.01G173100 Carya illinoinensis HOM05D001620 ORTHO05D005461 4.9e-09 65.9 120 33.3
Migut.N02375 Erythranthe guttata HOM05D001620 ORTHO05D003132 4.9e-09 65.9 179 26.8
Nn6g31636 Nelumbo nucifera HOM05D001620 ORTHO05D005461 6.4e-09 65.5 179 27.4
MELO3C015694.2 Cucumis melo HOM05D001620 ORTHO05D005461 8.3e-09 65.1 181 27.6
Glyma.12G058700 Glycine max HOM05D001620 ORTHO05D003132 8.3e-09 65.1 135 28.9
Medtr4g064917 Medicago truncatula HOM05D001620 ORTHO05D003132 8.3e-09 65.1 135 30.4
PSO675G1501 Papaver somniferum HOM05D001620 ORTHO05D005461 8.3e-09 65.1 158 27.8
Actinidia22372 Actinidia chinensis HOM05D001620 ORTHO05D003132 1.1e-08 64.7 105 35.2
HanXRQChr13g0419631 Helianthus annuus HOM05D001620 ORTHO05D005461 1.1e-08 64.7 201 25.9
QL11p056803 Quercus lobata HOM05D001620 ORTHO05D005461 1.1e-08 64.7 180 28.9
GSVIVG01023856001 Vitis vinifera HOM05D001620 ORTHO05D005461 1.1e-08 64.7 181 27.6
FvH4_3g37180 Fragaria vesca HOM05D001620 ORTHO05D003132 1.4e-08 64.3 135 29.6
FAN11G2079 Fragaria x ananassa HOM05D001620 ORTHO05D003132 1.4e-08 64.3 135 29.6
FAN15G2752 Fragaria x ananassa HOM05D001620 ORTHO05D005461 1.4e-08 64.3 180 26.7
Hma1.2p1_0619F.1_g190430 Hydrangea macrophylla HOM05D001620 ORTHO05D005461 1.4e-08 64.3 227 28.6
Lj4g0021462 Lotus japonicus HOM05D001620 ORTHO05D003132 1.4e-08 64.3 135 29.6
PSO541G2761 Papaver somniferum HOM05D001620 ORTHO05D005461 1.4e-08 64.3 179 27.9
Prupe.6G067500 Prunus persica HOM05D001620 ORTHO05D003132 1.4e-08 64.3 135 29.6
Cc00_g03540 Coffea canephora HOM05D001620 ORTHO05D005461 2.4e-08 63.5 158 28.5
Glyma.11G135100 Glycine max HOM05D001620 ORTHO05D003132 2.4e-08 63.5 135 28.1
Lalb_Chr19g0138011 Lupinus albus HOM05D001620 ORTHO05D003132 2.4e-08 63.5 135 28.9
CSS0013648 Camellia sinensis var. sinensis HOM05D001620 ORTHO05D003132 3.2e-08 63.2 105 36.2
CDE05G0493 Ceratophyllum demersum HOM05D002908 ORTHO05D009379 3.2e-08 63.2 178 24.2
FAN25G1449 Fragaria x ananassa HOM05D001620 ORTHO05D003132 3.2e-08 63.2 135 28.9
RcHm_v2.0_Chr5g0066921 Rosa chinensis HOM05D001620 ORTHO05D003132 3.2e-08 63.2 135 29.6
RcHm_v2.0_Chr6g0281221 Rosa chinensis HOM05D001620 ORTHO05D005461 3.2e-08 63.2 180 26.7
CANSAT54G0752 Cannabis sativa HOM05D001620 ORTHO05D005461 4.1e-08 62.8 105 37.1
FAN16G1201 Fragaria x ananassa HOM05D001620 ORTHO05D003132 4.1e-08 62.8 135 28.9
FAN21G0292 Fragaria x ananassa HOM05D001620 ORTHO05D003132 4.1e-08 62.8 135 28.9
MD03G1083200 Malus domestica HOM05D001620 ORTHO05D003132 4.1e-08 62.8 135 29.6
Os07g0549200 Oryza sativa ssp. japonica HOM05D001620 ORTHO05D003132 4.1e-08 62.8 127 29.1
Phvul.011G060800 Phaseolus vulgaris HOM05D001620 ORTHO05D003132 4.1e-08 62.8 135 28.9
vmacro16974 Vaccinium macrocarpon HOM05D002908 ORTHO05D009379 4.1e-08 62.8 154 28.6
EL10Ac3g06031 Beta vulgaris HOM05D001620 ORTHO05D005461 5.4e-08 62.4 105 35.2
Eucgr.B02297 Eucalyptus grandis HOM05D001620 ORTHO05D003132 5.4e-08 62.4 105 33.3
TWI56G1405 Tripterygium wilfordii HOM05D001620 ORTHO05D003132 5.4e-08 62.4 135 28.9
Haze_01957 Corylus avellana HOM05D001620 ORTHO05D005461 7.0e-08 62.0 180 27.2
Eucgr.A00034 Eucalyptus grandis HOM05D001620 ORTHO05D005461 7.0e-08 62.0 172 29.7
MD04G1047000 Malus domestica HOM05D001620 ORTHO05D005461 7.0e-08 62.0 120 33.3
MD10G1143100 Malus domestica HOM05D001620 ORTHO05D005461 7.0e-08 62.0 206 25.7
arahy.Tifrunner.gnm1.ann1.G0W8DL Arachis hypogaea HOM05D001620 ORTHO05D005461 9.2e-08 61.6 158 27.2
MSTRG.11478 Avicennia marina HOM05D001620 ORTHO05D003132 9.2e-08 61.6 145 30.3
Cfa005393 Carpinus fangiana HOM05D001620 ORTHO05D005461 9.2e-08 61.6 194 26.3
Phvul.003G032700 Phaseolus vulgaris HOM05D001620 ORTHO05D003132 9.2e-08 61.6 143 28.0
Actinidia17986 Actinidia chinensis HOM05D001620 ORTHO05D005461 1.2e-07 61.2 182 28.6
ECA234G1622 Erigeron canadensis HOM05D000443 ORTHO05D006935 1.2e-07 61.2 199 24.6
FAN27G0152 Fragaria x ananassa HOM05D001620 ORTHO05D005461 1.2e-07 61.2 180 25.6
VMungo1127G0017 Vigna mungo HOM05D001620 ORTHO05D003132 1.2e-07 61.2 135 28.1
Gorai.005G216000 Gossypium raimondii HOM05D001620 ORTHO05D005461 1.6e-07 60.8 185 27.0
Medtr1g031110 Medicago truncatula HOM05D001620 ORTHO05D003132 1.6e-07 60.8 143 26.6
Pp3c6_14920 Physcomitrium patens HOM05D001620 ORTHO05D003132 1.6e-07 60.8 100 33.0
SEGI_01800 Sequoiadendron giganteum HOM05D001620 ORTHO05D003132 1.6e-07 60.8 101 35.6
Zm00001eb106590 Zea mays HOM05D001620 ORTHO05D003132 1.6e-07 60.8 127 29.1
AT5G48730 Arabidopsis thaliana HOM05D001779 ORTHO05D001753 2.0e-07 60.5 190 26.8
MELO3C020598.2 Cucumis melo HOM05D001620 ORTHO05D003132 2.0e-07 60.5 104 34.6
Hma1.2p1_0280F.1_g112770 Hydrangea macrophylla HOM05D002908 ORTHO05D009379 2.0e-07 60.5 139 28.8
Medtr3g079890 Medicago truncatula HOM05D001620 ORTHO05D003132 2.0e-07 60.5 143 26.6
PGR102G2136 Punica granatum HOM05D001620 ORTHO05D003132 2.0e-07 60.5 143 26.6
Sp2g19140 Schrenkiella parvula HOM05D001779 ORTHO05D001753 2.0e-07 60.5 193 27.5
arahy.Tifrunner.gnm1.ann1.0C9A28 Arachis hypogaea HOM05D001620 ORTHO05D003132 3.5e-07 59.7 179 27.4
arahy.Tifrunner.gnm1.ann1.6U9V59 Arachis hypogaea HOM05D001620 ORTHO05D003132 3.5e-07 59.7 179 27.4
A06p38950 Brassica napus HOM05D001779 ORTHO05D001753 3.5e-07 59.7 227 26.9
Ciclev10016520m.g Citrus clementina HOM05D001620 ORTHO05D003132 3.5e-07 59.7 176 26.1
Ciclev10019744m.g Citrus clementina HOM05D001779 ORTHO05D001753 3.5e-07 59.7 216 25.9
CsaV3_1G034610 Cucumis sativus L. HOM05D001620 ORTHO05D003132 3.5e-07 59.7 104 33.7
CsaV3_1G035710 Cucumis sativus L. HOM05D001620 ORTHO05D003132 3.5e-07 59.7 104 33.7
Gohir.D02G193200 Gossypium hirsutum HOM05D001620 ORTHO05D005461 3.5e-07 59.7 185 26.5
ClCG03G001190 Citrullus lanatus HOM05D001620 ORTHO05D003132 4.6e-07 59.3 105 33.3
MD11G1091300 Malus domestica HOM05D001620 ORTHO05D003132 4.6e-07 59.3 135 29.6
Rhsim07G0221500 Rhododendron simsii HOM05D001620 ORTHO05D005461 4.6e-07 59.3 193 26.9
SEGI_13321 Sequoiadendron giganteum HOM05D001620 ORTHO05D003132 6.0e-07 58.9 138 28.3
TAR376G0870 Trochodendron aralioides HOM05D001620 ORTHO05D005461 6.0e-07 58.9 180 26.7
BcaC06g30762 Brassica carinata HOM05D001779 ORTHO05D001753 7.8e-07 58.5 193 27.5
Haze_23244 Corylus avellana HOM05D001620 ORTHO05D003132 7.8e-07 58.5 143 27.3
Oeu015935.2 Olea europaea HOM05D001620 ORTHO05D005461 7.8e-07 58.5 184 28.8
SMO172G0041 Selaginella moellendorffii HOM05D001620 ORTHO05D003132 7.8e-07 58.5 151 25.2
BraA06t26809Z Brassica rapa HOM05D001779 ORTHO05D001753 1.0e-06 58.2 227 26.4
Thhalv10004021m.g Eutrema salsugineum HOM05D001779 ORTHO05D001753 1.0e-06 58.2 201 25.9
Glyma.07G164700 Glycine max HOM05D001620 ORTHO05D003132 1.0e-06 58.2 143 28.0
Hma1.2p1_0837F.1_g226100 Hydrangea macrophylla HOM05D001620 ORTHO05D003132 1.0e-06 58.2 114 30.7
Sabra07G0109000 Salix brachista HOM05D001620 ORTHO05D005461 1.0e-06 58.2 111 33.3
Thecc.09G312600 Theobroma cacao HOM05D001620 ORTHO05D003132 1.0e-06 58.2 105 33.3
TWI79G0573 Tripterygium wilfordii HOM05D001620 ORTHO05D005461 1.0e-06 58.2 178 24.2
Atru.chr4.1349 Acer truncatum HOM05D001620 ORTHO05D005461 1.3e-06 57.8 118 34.7
BcaB08g37218 Brassica carinata HOM05D001620 ORTHO05D005461 1.3e-06 57.8 211 24.2
C07p39380 Brassica napus HOM05D001779 ORTHO05D001753 1.3e-06 57.8 177 27.1
BolC7t44458H Brassica oleracea HOM05D001779 ORTHO05D001753 1.3e-06 57.8 177 27.1
Cpa.g.sc81.55 Carica papaya HOM05D001620 ORTHO05D003132 1.3e-06 57.8 132 28.0
Migut.M01344 Erythranthe guttata HOM05D001620 ORTHO05D003132 1.3e-06 57.8 105 29.5
Gohir.A03G170100 Gossypium hirsutum HOM05D001620 ORTHO05D005461 1.3e-06 57.8 185 26.5
Gohir.A05G092100 Gossypium hirsutum HOM05D001620 ORTHO05D003132 1.3e-06 57.8 132 27.3
MBI17_g25734_MAGBIO Magnolia biondii HOM05D001620 ORTHO05D005461 1.3e-06 57.8 167 26.3
Oeu048110.1 Olea europaea HOM05D001620 ORTHO05D005461 1.3e-06 57.8 145 26.9
PSO339G4667 Papaver somniferum HOM05D001620 ORTHO05D003132 1.3e-06 57.8 102 33.3
THA.LOC104810746 Tarenaya hassleriana HOM05D001620 ORTHO05D003132 1.3e-06 57.8 132 26.5
AL8G21830 Arabidopsis lyrata HOM05D001779 ORTHO05D001753 1.7e-06 57.4 200 26.5
BolC9t59562H Brassica oleracea HOM05D003132 ORTHO05D003736 1.7e-06 57.4 185 25.4
COL.COLO4_03849 Corchorus olitorius HOM05D001620 ORTHO05D005461 1.7e-06 57.4 185 27.6
Dinv14184 Davidia involucrata HOM05D001620 ORTHO05D005461 1.7e-06 57.4 182 26.4
Gohir.A02G092600 Gossypium hirsutum HOM05D001620 ORTHO05D005461 1.7e-06 57.4 118 34.7
Manes.11G012200 Manihot esculenta HOM05D001620 ORTHO05D003132 1.7e-06 57.4 182 26.9
PSO675G0461 Papaver somniferum HOM05D001620 ORTHO05D005461 1.7e-06 57.4 105 35.2
SEGI_06390 Sequoiadendron giganteum HOM05D001620 ORTHO05D005461 1.7e-06 57.4 143 28.7
SEGI_20759 Sequoiadendron giganteum HOM05D001620 ORTHO05D003132 1.7e-06 57.4 138 28.3
Thecc.02G148000 Theobroma cacao HOM05D001620 ORTHO05D005461 1.7e-06 57.4 185 27.0
Aa31LG4G15800 Aethionema arabicum HOM05D001620 ORTHO05D003132 2.3e-06 57.0 105 29.5
ATR0743G151 Amborella trichopoda HOM05D001620 ORTHO05D003132 2.3e-06 57.0 105 33.3
ClCG07G015080 Citrullus lanatus HOM05D001620 ORTHO05D005461 2.3e-06 57.0 160 25.6
Cc09_g06110 Coffea canephora HOM05D001620 ORTHO05D003132 2.3e-06 57.0 105 32.4
Haze_24202 Corylus avellana HOM05D001620 ORTHO05D003132 2.3e-06 57.0 105 31.4
Gohir.D02G110700 Gossypium hirsutum HOM05D001620 ORTHO05D005461 2.3e-06 57.0 118 34.7
Gorai.005G125600 Gossypium raimondii HOM05D001620 ORTHO05D005461 2.3e-06 57.0 118 34.7
Lj2A378T24 Lonicera japonica HOM05D001620 ORTHO05D003132 2.3e-06 57.0 104 32.7
MBI15_g18583_MAGBIO Magnolia biondii HOM05D001620 ORTHO05D003132 2.3e-06 57.0 179 25.1
Manes.11G127400 Manihot esculenta HOM05D001620 ORTHO05D005461 2.3e-06 57.0 108 34.3
SHI25415 Sapria himalayana HOM05D001620 ORTHO05D003132 2.3e-06 57.0 102 32.4
GSVIVG01024855001 Vitis vinifera HOM05D001620 ORTHO05D003132 2.3e-06 57.0 104 31.7
BcaB01g00964 Brassica carinata HOM05D001620 ORTHO05D003132 3.0e-06 56.6 132 26.5
Dinv31490 Davidia involucrata HOM05D001620 ORTHO05D003132 3.0e-06 56.6 105 32.4
Hma1.2p1_2359F.1_g320596 Hydrangea macrophylla HOM05D001620 ORTHO05D005461 3.0e-06 56.6 112 30.4
Rhsim07G0068400 Rhododendron simsii HOM05D001620 ORTHO05D003132 3.0e-06 56.6 104 32.7
RcHm_v2.0_Chr5g0052331 Rosa chinensis HOM05D001620 ORTHO05D003132 3.0e-06 56.6 175 25.7
Hund11612 Selenicereus undatus HOM05D001620 ORTHO05D003132 3.0e-06 56.6 143 26.6
Ah.01g004170 Amaranthus hybridus HOM05D001620 ORTHO05D003132 3.9e-06 56.2 102 33.3
CARHR183130 Cardamine hirsuta HOM05D001779 ORTHO05D001753 3.9e-06 56.2 175 26.3
Glyma.18G047500 Glycine max HOM05D001620 ORTHO05D003132 3.9e-06 56.2 138 27.5
Lj2g0012959 Lotus japonicus HOM05D001620 ORTHO05D003132 3.9e-06 56.2 143 26.6
MBI01_g28400_MAGBIO Magnolia biondii HOM05D001620 ORTHO05D005461 3.9e-06 56.2 184 25.5
MBI02_g35316_MAGBIO Magnolia biondii HOM05D001620 ORTHO05D003132 3.9e-06 56.2 105 31.4
Thecc.09G247800 Theobroma cacao HOM05D001620 ORTHO05D003132 3.9e-06 56.2 143 25.2
Ca_17989_v3 Cicer arietinum L. HOM05D001620 ORTHO05D003132 5.0e-06 55.8 135 26.7
Cc03_g11940 Coffea canephora HOM05D001620 ORTHO05D005461 5.0e-06 55.8 108 33.3
MBI07_g05481_MAGBIO Magnolia biondii HOM05D001779 ORTHO05D001753 5.0e-06 55.8 191 24.6
Oeu013082.3 Olea europaea HOM05D001620 ORTHO05D003132 5.0e-06 55.8 135 25.9
Ah.06g194630 Amaranthus hybridus HOM05D001620 ORTHO05D003132 6.6e-06 55.5 143 25.2
AagrBONN_evm.TU.Sc2ySwM_344.3808 Anthoceros agrestis HOM05D001620 ORTHO05D003132 6.6e-06 55.5 183 24.6
AL5G25890 Arabidopsis lyrata HOM05D001620 ORTHO05D003132 6.6e-06 55.5 132 25.8
Cpa.g.sc9.334 Carica papaya HOM05D001620 ORTHO05D005461 6.6e-06 55.5 118 32.2
Cfa011584 Carpinus fangiana HOM05D001620 ORTHO05D003132 6.6e-06 55.5 105 31.4
CiPaw.13G087400 Carya illinoinensis HOM05D001620 ORTHO05D003132 6.6e-06 55.5 105 30.5
Eucgr.B03737 Eucalyptus grandis HOM05D001620 ORTHO05D003132 6.6e-06 55.5 157 25.5
Prupe.4G265100 Prunus persica HOM05D001620 ORTHO05D003132 6.6e-06 55.5 143 26.6
QL10p052582 Quercus lobata HOM05D001620 ORTHO05D005461 6.6e-06 55.5 78 39.7
Sed0016023 Sechium edule HOM05D001620 ORTHO05D003132 6.6e-06 55.5 106 32.1
GSVIVG01024591001 Vitis vinifera HOM05D001620 ORTHO05D003132 6.6e-06 55.5 105 30.5
CANSAT25G1898 Cannabis sativa HOM05D001620 ORTHO05D003132 8.6e-06 55.1 168 25.0
Carub.0008s0848 Capsella rubella HOM05D001779 ORTHO05D001753 8.6e-06 55.1 190 25.8
Haze_12936 Corylus avellana HOM05D001620 ORTHO05D005461 8.6e-06 55.1 106 31.1
FAN25G3321 Fragaria x ananassa HOM05D001620 ORTHO05D003132 8.6e-06 55.1 192 26.0
Lsat_1_v5_gn_4_71240 Lactuca sativa HOM05D001620 ORTHO05D005461 8.6e-06 55.1 185 24.9
Sc06g0004700 Simmondsia chinensis HOM05D001620 ORTHO05D003132 8.6e-06 55.1 163 24.5
HPP92_015473 Vanilla planifolia HOM05D002051 ORTHO05D002041 8.6e-06 55.1 186 26.3


User provided reference genes

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