Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO347G0105 Selaginella moellendorffii HOM05D003397 ORTHO05D004390 0.0e+00 3053.5 1532 100.0
SMO336G0042 Selaginella moellendorffii HOM05D003397 ORTHO05D004390 0.0e+00 2989.1 1535 97.9
AagrBONN_evm.TU.Sc2ySwM_228.4168 Anthoceros agrestis HOM05D003397 ORTHO05D004390 0.0e+00 1850.1 1594 60.0
Pp3c13_14480 Physcomitrium patens HOM05D003397 ORTHO05D004390 0.0e+00 1824.3 1611 59.3
Pp3c4_17500 Physcomitrium patens HOM05D003397 ORTHO05D004390 0.0e+00 1814.7 1614 58.9
SEGI_22371 Sequoiadendron giganteum HOM05D003397 ORTHO05D004390 0.0e+00 1794.6 1608 59.0
MBI02_g30884_MAGBIO Magnolia biondii HOM05D003397 ORTHO05D004390 0.0e+00 1780.8 1610 58.4
Mapoly0002s0049 Marchantia polymorpha HOM05D003397 ORTHO05D004390 0.0e+00 1772.7 1586 57.6
Nn1g05275 Nelumbo nucifera HOM05D003397 ORTHO05D004390 0.0e+00 1768.1 1605 58.1
Aqoxy5G01966 Aquilegia oxysepala HOM05D003397 ORTHO05D004390 0.0e+00 1764.6 1605 57.6
Nn5g29020 Nelumbo nucifera HOM05D003397 ORTHO05D004390 0.0e+00 1764.6 1608 58.3
Glyma.04G104900 Glycine max HOM05D003397 ORTHO05D004390 0.0e+00 1763.8 1604 57.4
Phvul.009G028700 Phaseolus vulgaris HOM05D003397 ORTHO05D004390 0.0e+00 1763.8 1607 57.3
QL12p035954 Quercus lobata HOM05D003397 ORTHO05D004390 0.0e+00 1763.4 1606 57.9
FvH4_5g38000 Fragaria vesca HOM05D003397 ORTHO05D004390 0.0e+00 1763.0 1604 57.5
FAN18G1561 Fragaria x ananassa HOM05D003397 ORTHO05D004390 0.0e+00 1762.7 1604 57.5
FAN13G2833 Fragaria x ananassa HOM05D003397 ORTHO05D004390 0.0e+00 1760.0 1604 57.5
FAN08G3668 Fragaria x ananassa HOM05D003397 ORTHO05D004390 0.0e+00 1759.2 1604 57.5
VMungo1309G3072 Vigna mungo HOM05D003397 ORTHO05D004390 0.0e+00 1759.2 1607 57.4
arahy.Tifrunner.gnm1.ann1.L14VXE Arachis hypogaea HOM05D003397 ORTHO05D004390 0.0e+00 1758.4 1605 56.9
RcHm_v2.0_Chr7g0239931 Rosa chinensis HOM05D003397 ORTHO05D004390 0.0e+00 1758.4 1606 57.4
arahy.Tifrunner.gnm1.ann1.ZST20A Arachis hypogaea HOM05D003397 ORTHO05D004390 0.0e+00 1758.0 1605 56.9
CiPaw.05G233000 Carya illinoinensis HOM05D003397 ORTHO05D004390 0.0e+00 1757.3 1605 57.2
Cfa015924 Carpinus fangiana HOM05D003397 ORTHO05D004390 0.0e+00 1755.0 1605 57.1
CiPaw.06G022200 Carya illinoinensis HOM05D003397 ORTHO05D004390 0.0e+00 1753.8 1605 57.8
Atru.chr13.1263 Acer truncatum HOM05D003397 ORTHO05D004390 0.0e+00 1753.4 1599 57.2
FAN04G2782 Fragaria x ananassa HOM05D003397 ORTHO05D004390 0.0e+00 1753.0 1605 57.4
Prupe.1G512000 Prunus persica HOM05D003397 ORTHO05D004390 0.0e+00 1753.0 1601 57.5
Glyma.06G105900 Glycine max HOM05D003397 ORTHO05D004390 0.0e+00 1752.3 1604 56.9
Lj1g0005089 Lotus japonicus HOM05D003397 ORTHO05D004390 0.0e+00 1752.3 1605 57.3
MD15G1363500 Malus domestica HOM05D003397 ORTHO05D004390 0.0e+00 1749.9 1605 57.6
CANSAT25G3899 Cannabis sativa HOM05D003397 ORTHO05D004390 0.0e+00 1748.4 1602 57.7
Lalb_Chr08g0241871 Lupinus albus HOM05D003397 ORTHO05D004390 0.0e+00 1748.0 1607 56.9
Duzib116G0371 Durio zibethinus HOM05D003397 ORTHO05D004390 0.0e+00 1747.3 1607 57.1
Migut.C00221 Erythranthe guttata HOM05D003397 ORTHO05D004390 0.0e+00 1746.1 1594 57.5
MD08G1178000 Malus domestica HOM05D003397 ORTHO05D004390 0.0e+00 1745.7 1605 57.5
Peaxi162Scf00160g01527 Petunia axillaris HOM05D003397 ORTHO05D004390 0.0e+00 1743.4 1602 57.4
Thecc.08G111500 Theobroma cacao HOM05D003397 ORTHO05D004390 0.0e+00 1743.4 1608 57.2
Ciclev10000007m.g Citrus clementina HOM05D003397 ORTHO05D004390 0.0e+00 1743.0 1604 57.1
Psat5g137080 Pisum sativum HOM05D003397 ORTHO05D004390 0.0e+00 1743.0 1601 56.7
Gorai.002G219400 Gossypium raimondii HOM05D003397 ORTHO05D004390 0.0e+00 1740.7 1605 57.1
Cc10_g05850 Coffea canephora HOM05D003397 ORTHO05D004390 0.0e+00 1740.3 1600 57.0
Manes.02G155300 Manihot esculenta HOM05D003397 ORTHO05D004390 0.0e+00 1740.3 1603 57.2
TAR381G1558 Trochodendron aralioides HOM05D003397 ORTHO05D004390 0.0e+00 1740.3 1605 56.9
Medtr3g073860 Medicago truncatula HOM05D003397 ORTHO05D004390 0.0e+00 1738.4 1601 56.2
Lalb_Chr11g0065541 Lupinus albus HOM05D003397 ORTHO05D004390 0.0e+00 1736.9 1603 56.8
Ca_15227_v3 Cicer arietinum L. HOM05D003397 ORTHO05D004390 0.0e+00 1735.3 1605 56.5
Haze_00572 Corylus avellana HOM05D003397 ORTHO05D004390 0.0e+00 1734.9 1625 56.3
CsaV3_5G023610 Cucumis sativus L. HOM05D003397 ORTHO05D004390 0.0e+00 1734.5 1601 56.8
Sed0010592 Sechium edule HOM05D003397 ORTHO05D004390 0.0e+00 1731.1 1603 56.9
SGA_v2.0_scaffold201G41423 Striga asiatica HOM05D003397 ORTHO05D004390 0.0e+00 1729.5 1615 56.4
Rhsim07G0200500 Rhododendron simsii HOM05D003397 ORTHO05D004390 0.0e+00 1729.1 1600 57.2
Sc20g0003310 Simmondsia chinensis HOM05D003397 ORTHO05D004390 0.0e+00 1728.0 1602 56.5
PSO210G7545 Papaver somniferum HOM05D003397 ORTHO05D004390 0.0e+00 1726.5 1608 56.3
TPR.G34613 Trifolium pratense HOM05D003397 ORTHO05D004390 0.0e+00 1726.5 1630 55.6
ATR0564G238 Amborella trichopoda HOM05D003397 ORTHO05D004390 0.0e+00 1726.1 1603 56.4
PGSC0003DMG400008551 Solanum tuberosum HOM05D003397 ORTHO05D004390 0.0e+00 1726.1 1606 56.7
vmacro04766 Vaccinium macrocarpon HOM05D003397 ORTHO05D004390 0.0e+00 1725.7 1622 56.3
Eucgr.F00484 Eucalyptus grandis HOM05D003397 ORTHO05D004390 0.0e+00 1724.5 1602 56.9
Nitab4.5_0000421g0140 Nicotiana tabacum HOM05D003397 ORTHO05D004390 0.0e+00 1724.5 1601 57.1
HanXRQChr05g0147241 Helianthus annuus HOM05D003397 ORTHO05D004390 0.0e+00 1724.1 1592 56.3
BcaC07g37499 Brassica carinata HOM05D003397 ORTHO05D004390 0.0e+00 1722.6 1609 56.7
BolC8t47818H Brassica oleracea HOM05D003397 ORTHO05D004390 0.0e+00 1722.6 1609 56.7
CANSAT11G0938 Cannabis sativa HOM05D003397 ORTHO05D004390 0.0e+00 1722.6 1587 57.1
AL1G50870 Arabidopsis lyrata HOM05D003397 ORTHO05D004390 0.0e+00 1722.2 1602 57.1
PSO447G0125 Papaver somniferum HOM05D003397 ORTHO05D004390 0.0e+00 1721.8 1605 56.3
PGR042G1140 Punica granatum HOM05D003397 ORTHO05D004390 0.0e+00 1721.8 1606 56.2
Ah.05g168580 Amaranthus hybridus HOM05D003397 ORTHO05D004390 0.0e+00 1721.4 1596 56.3
Nitab4.5_0006548g0020 Nicotiana tabacum HOM05D003397 ORTHO05D004390 0.0e+00 1720.3 1589 57.4
BraA08t32819Z Brassica rapa HOM05D003397 ORTHO05D004390 0.0e+00 1719.9 1609 56.7
TWI12G0718 Tripterygium wilfordii HOM05D003397 ORTHO05D004390 0.0e+00 1719.5 1605 56.4
Sopen12g029600 Solanum pennellii HOM05D003397 ORTHO05D004390 0.0e+00 1719.1 1606 56.4
Peaxi162Scf00310g00211 Petunia axillaris HOM05D003397 ORTHO05D004390 0.0e+00 1718.7 1609 57.0
Sc04g0006510 Simmondsia chinensis HOM05D003397 ORTHO05D004390 0.0e+00 1718.7 1614 55.8
Gohir.D05G269700 Gossypium hirsutum HOM05D003397 ORTHO05D004390 0.0e+00 1718.4 1601 56.2
THA.LOC104813126 Tarenaya hassleriana HOM05D003397 ORTHO05D004390 0.0e+00 1718.4 1605 56.3
MSTRG.944 Avicennia marina HOM05D003397 ORTHO05D004390 0.0e+00 1716.8 1595 56.4
Manes.18G070300 Manihot esculenta HOM05D003397 ORTHO05D004390 0.0e+00 1716.8 1604 56.6
Solyc12g056940.2 Solanum lycopersicum HOM05D003397 ORTHO05D004390 0.0e+00 1715.7 1606 56.4
Thhalv10003506m.g Eutrema salsugineum HOM05D003397 ORTHO05D004390 0.0e+00 1715.3 1605 56.8
BcaB04g17823 Brassica carinata HOM05D003397 ORTHO05D004390 0.0e+00 1714.5 1609 56.4
Gorai.009G282300 Gossypium raimondii HOM05D003397 ORTHO05D004390 0.0e+00 1714.1 1601 56.0
EL10Ac1g01671 Beta vulgaris HOM05D003397 ORTHO05D004390 0.0e+00 1713.0 1607 56.3
Potri.002G092700 Populus trichocarpa HOM05D003397 ORTHO05D004390 0.0e+00 1713.0 1606 56.4
Gohir.A05G268100 Gossypium hirsutum HOM05D003397 ORTHO05D004390 0.0e+00 1711.8 1601 55.9
Lsat_1_v5_gn_9_44420 Lactuca sativa HOM05D003397 ORTHO05D004390 0.0e+00 1711.4 1596 56.3
AT1G36160 Arabidopsis thaliana HOM05D003397 ORTHO05D004390 0.0e+00 1710.7 1604 56.5
Lj4C108T3 Lonicera japonica HOM05D003397 ORTHO05D004390 0.0e+00 1710.3 1606 56.3
CSS0006750 Camellia sinensis var. sinensis HOM05D003397 ORTHO05D004390 0.0e+00 1709.9 1604 56.2
Carub.0001s3360 Capsella rubella HOM05D003397 ORTHO05D004390 0.0e+00 1708.3 1604 56.5
SHI09383 Sapria himalayana HOM05D003397 ORTHO05D004390 0.0e+00 1706.8 1608 55.7
AUR62034355 Chenopodium quinoa HOM05D003397 ORTHO05D004390 0.0e+00 1706.4 1603 55.8
Potri.005G169100 Populus trichocarpa HOM05D003397 ORTHO05D004390 0.0e+00 1705.3 1606 56.0
ECA232G1190 Erigeron canadensis HOM05D003397 ORTHO05D004390 0.0e+00 1704.9 1593 56.3
DCAR_013178 Daucus carota HOM05D003397 ORTHO05D004390 0.0e+00 1703.7 1606 55.9
TWI56G0794 Tripterygium wilfordii HOM05D003397 ORTHO05D004390 0.0e+00 1701.0 1605 56.2
Sabra02G0073200 Salix brachista HOM05D003397 ORTHO05D004390 0.0e+00 1699.5 1637 55.4
Actinidia29577 Actinidia chinensis HOM05D003397 ORTHO05D004390 0.0e+00 1698.7 1583 57.0
HanXRQChr11g0320961 Helianthus annuus HOM05D003397 ORTHO05D004390 0.0e+00 1695.6 1601 55.8
Oeu024555.1 Olea europaea HOM05D003397 ORTHO05D004390 0.0e+00 1693.7 1602 56.5
A08p07970 Brassica napus HOM05D003397 ORTHO05D004390 0.0e+00 1692.2 1610 56.3
Aa31LG6G8980 Aethionema arabicum HOM05D003397 ORTHO05D004390 0.0e+00 1689.5 1588 56.2
TAR625G0333 Trochodendron aralioides HOM05D003397 ORTHO05D004390 0.0e+00 1684.8 1571 56.8
AUR62022354 Chenopodium quinoa HOM05D003397 ORTHO05D004390 0.0e+00 1684.1 1600 55.5
AT1G36180 Arabidopsis thaliana HOM05D003397 ORTHO05D004390 0.0e+00 1681.0 1611 55.3
Dinv13041 Davidia involucrata HOM05D003397 ORTHO05D004390 0.0e+00 1680.6 1604 55.8
CDE05G2113 Ceratophyllum demersum HOM05D003397 ORTHO05D004390 0.0e+00 1673.7 1616 55.1
ClCG03G009000 Citrullus lanatus HOM05D003397 ORTHO05D004390 0.0e+00 1672.5 1633 55.1
Os10g0363300 Oryza sativa ssp. japonica HOM05D003397 ORTHO05D004390 0.0e+00 1671.4 1611 55.0
Zm00001eb223980 Zea mays HOM05D003397 ORTHO05D004390 0.0e+00 1669.8 1608 55.1
AL1G50880 Arabidopsis lyrata HOM05D003397 ORTHO05D004390 0.0e+00 1664.8 1603 54.7
Carub.0001s3361 Capsella rubella HOM05D003397 ORTHO05D004390 0.0e+00 1663.3 1603 55.3
COL.COLO4_16461 Corchorus olitorius HOM05D003397 ORTHO05D004390 0.0e+00 1660.6 1557 56.9
unitig_46.g18003 Utricularia gibba HOM05D003397 ORTHO05D004390 0.0e+00 1643.2 1563 55.5
CSS0020243 Camellia sinensis var. sinensis HOM05D003397 ORTHO05D004390 0.0e+00 1641.7 1588 55.6
BraA06t23676Z Brassica rapa HOM05D003397 ORTHO05D004390 0.0e+00 1636.7 1573 54.6
A06p04730 Brassica napus HOM05D003397 ORTHO05D004390 0.0e+00 1629.4 1577 54.6
MELO3C022793.2 Cucumis melo HOM05D003397 ORTHO05D004390 0.0e+00 1629.0 1593 54.6
Zm00001eb086560 Zea mays HOM05D003397 ORTHO05D004390 0.0e+00 1627.1 1584 53.7
BcaB07g33794 Brassica carinata HOM05D003397 ORTHO05D004390 0.0e+00 1624.8 1609 54.4
CSS0020930 Camellia sinensis var. sinensis HOM05D003397 ORTHO05D004390 0.0e+00 1615.1 1588 55.2
Dinv44744 Davidia involucrata HOM05D003397 ORTHO05D004390 0.0e+00 1610.1 1607 54.2
Zm00001eb419400 Zea mays HOM05D003397 ORTHO05D004390 0.0e+00 1608.6 1584 53.1
ECA236G4037 Erigeron canadensis HOM05D003397 ORTHO05D004390 0.0e+00 1608.2 1592 53.9
Peaxi162Scf00030g01821 Petunia axillaris HOM05D003397 ORTHO05D004390 0.0e+00 1608.2 1609 53.4
BcaC08g43005 Brassica carinata HOM05D003397 ORTHO05D004390 0.0e+00 1604.7 1581 53.9
BolC6t35373H Brassica oleracea HOM05D003397 ORTHO05D004390 0.0e+00 1604.3 1581 53.8
C06p02460 Brassica napus HOM05D003397 ORTHO05D004390 0.0e+00 1602.8 1578 53.9
HPP92_027255 Vanilla planifolia HOM05D003397 ORTHO05D004390 0.0e+00 1601.3 1588 54.3
GSVIVG01008991001 Vitis vinifera HOM05D003397 ORTHO05D004390 0.0e+00 1592.8 1604 53.8
Nitab4.5_0005253g0020 Nicotiana tabacum HOM05D003397 ORTHO05D004390 0.0e+00 1531.2 1606 53.2
Cpa.g.sc66.90 Carica papaya HOM05D003397 ORTHO05D004390 0.0e+00 1500.3 1585 51.8
CBR_g21136 Chara braunii HOM05D003397 ORTHO05D004390 0.0e+00 1480.3 1728 48.4
Nitab4.5_0000469g0180 Nicotiana tabacum HOM05D003397 ORTHO05D004390 0.0e+00 1406.0 1606 50.0
Gohir.A01G186651 Gossypium hirsutum HOM05D003397 ORTHO05D004390 0.0e+00 1291.9 1224 55.5
Gohir.D01G183100 Gossypium hirsutum HOM05D003397 ORTHO05D004390 0.0e+00 1196.8 1135 56.3
Sp1g30640 Schrenkiella parvula HOM05D003397 ORTHO05D004390 3.5e-289 999.2 1045 52.0
CDE05G3043 Ceratophyllum demersum HOM05D003397 ORTHO05D004390 6.0e-249 865.5 928 50.9
Gohir.A01G186450 Gossypium hirsutum HOM05D003397 ORTHO05D004390 2.3e-248 863.6 929 51.9
CAN.G12.31 Capsicum annuum HOM05D003397 ORTHO05D004390 2.8e-246 856.7 667 63.1
Hund17528 Selenicereus undatus HOM05D003397 ORTHO05D004390 1.6e-241 840.9 683 61.6
Actinidia33155 Actinidia chinensis HOM05D003397 ORTHO05D004390 4.3e-239 832.8 877 51.5
CARHR034890 Cardamine hirsuta HOM05D003397 ORTHO05D004390 5.2e-237 825.9 1081 43.8
Cfa022865 Carpinus fangiana HOM05D003397 ORTHO05D004390 4.9e-235 819.3 1647 34.9
Cre08.g373050 Chlamydomonas reinhardtii HOM05D003397 ORTHO05D004390 9.3e-234 815.1 2010 32.2
CARHR034870 Cardamine hirsuta HOM05D003397 ORTHO05D004390 6.6e-232 808.9 1090 43.2
MCO01G438 Micromonas commoda HOM05D003397 ORTHO05D004390 1.4e-221 774.6 1573 35.5
Medtr3g073820 Medicago truncatula HOM05D003397 ORTHO05D004390 7.1e-218 762.3 855 48.8
PRCOL_00006044 Prasinoderma coloniale HOM05D003397 ORTHO05D004390 7.2e-186 656.0 1650 31.8
MCO15G166 Micromonas commoda HOM05D003397 ORTHO05D004390 1.4e-176 625.2 1578 31.7
PRCOL_00001984 Prasinoderma coloniale HOM05D003397 ORTHO05D004390 6.7e-176 622.9 1846 29.3
Manes.02G155501 Manihot esculenta HOM05D003397 ORTHO05D004390 6.5e-171 606.3 507 61.5
CDE05G1314 Ceratophyllum demersum HOM05D003397 ORTHO05D004390 1.4e-168 598.6 626 53.7
Gohir.A01G186501 Gossypium hirsutum HOM05D003397 ORTHO05D004390 1.6e-129 468.8 285 80.4
CARHR034880 Cardamine hirsuta HOM05D003397 ORTHO05D004390 2.4e-88 332.0 253 65.2
CARHR034860 Cardamine hirsuta HOM05D003397 ORTHO05D004390 1.2e-87 329.7 253 64.4
Psat4g123920 Pisum sativum HOM05D003397 ORTHO05D004390 1.2e-87 329.7 238 64.3
Psat4g213440 Pisum sativum HOM05D003397 ORTHO05D004390 4.5e-79 301.2 306 52.6
Zm00001eb189990 Zea mays HOM05D003397 ORTHO05D004390 5.3e-64 251.1 163 75.5
Zm00001eb367400 Zea mays HOM05D003397 ORTHO05D004390 5.3e-64 251.1 163 75.5
Zm00001eb028920 Zea mays HOM05D003397 ORTHO05D004390 9.1e-64 250.4 163 74.8
CARHR283610 Cardamine hirsuta HOM05D003397 ORTHO05D004390 2.7e-52 212.2 213 56.8
CARHR283620 Cardamine hirsuta HOM05D003397 ORTHO05D004390 7.3e-37 161.0 90 86.7
Actinidia33154 Actinidia chinensis HOM05D003397 ORTHO05D004390 3.2e-32 145.6 172 53.5
Os05g0295300 Oryza sativa ssp. japonica HOM05D003397 ORTHO05D030872 3.5e-31 142.1 174 42.0
Pp3c3_15800 Physcomitrium patens HOM05D003397 ORTHO05D317429 2.8e-28 132.5 164 43.3
Glyma.07G137400 Glycine max HOM05D003397 ORTHO05D046763 4.0e-27 128.6 93 64.5
Lsat_1_v5_gn_3_57521 Lactuca sativa HOM05D003397 ORTHO05D004390 7.0e-24 117.9 169 43.2
CAN.G182.15 Capsicum annuum HOM05D003397 ORTHO05D000137 3.5e-23 115.5 73 69.9
Actinidia33156 Actinidia chinensis HOM05D003397 ORTHO05D030872 6.8e-19 101.3 143 39.2
SEGI_04864 Sequoiadendron giganteum HOM05D003397 ORTHO05D004390 4.1e-16 92.0 121 42.1
Haze_26794 Corylus avellana HOM05D003397 ORTHO05D004390 3.6e-12 79.0 96 37.5
SMO336G0002 Selaginella moellendorffii HOM05D003397 ORTHO05D377537 2.0e-10 73.2 49 71.4
Lj1g0014764 Lotus japonicus HOM05D003397 ORTHO05D046763 4.4e-10 72.0 104 44.2
VMungo0464G0653 Vigna mungo HOM05D004859 ORTHO05D005807 5.4e-08 65.1 52 59.6
Actinidia33153 Actinidia chinensis HOM05D003397 ORTHO05D004390 9.2e-08 64.3 95 40.0
CBR_g54985 Chara braunii HOM05D006107 ORTHO05D007455 1.7e-06 60.1 300 22.7


User provided reference genes

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