Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO341G0001 Selaginella moellendorffii HOM05D003384 ORTHO05D018108 2.4e-27 124.8 65 100.0
SMO011G0040 Selaginella moellendorffii HOM05D003384 ORTHO05D018108 4.2e-19 97.4 63 82.5
SMO347G0175 Selaginella moellendorffii HOM05D003384 ORTHO05D018108 4.2e-19 97.4 63 82.5
SMO116G0212 Selaginella moellendorffii HOM05D003384 ORTHO05D018108 5.5e-19 97.1 63 82.5
SMO358G0063 Selaginella moellendorffii HOM05D003384 ORTHO05D005024 2.3e-17 91.7 55 87.3
SMO032G0004 Selaginella moellendorffii HOM05D003320 ORTHO05D003941 3.9e-17 90.9 56 82.1
CBR_g19873 Chara braunii HOM05D003384 ORTHO05D005024 8.7e-17 89.7 55 83.6
AagrBONN_evm.TU.Sc2ySwM_344.2607 Anthoceros agrestis HOM05D003384 ORTHO05D005024 3.3e-16 87.8 55 78.2
Pp3c6_8600 Physcomitrium patens HOM05D003384 ORTHO05D005024 9.6e-16 86.3 55 80.0
SMO286G0018 Selaginella moellendorffii HOM05D003384 ORTHO05D018108 2.8e-15 84.7 49 87.8
Mapoly0047s0031 Marchantia polymorpha HOM05D003384 ORTHO05D005024 1.1e-14 82.8 55 78.2
Sed0002627 Sechium edule HOM05D003384 ORTHO05D005024 1.4e-14 82.4 55 78.2
MELO3C018382.2 Cucumis melo HOM05D003384 ORTHO05D005024 2.4e-14 81.6 55 76.4
CsaV3_5G010490 Cucumis sativus L. HOM05D003384 ORTHO05D005024 2.4e-14 81.6 55 76.4
SMO353G0102 Selaginella moellendorffii HOM05D003384 ORTHO05D018108 4.1e-14 80.9 48 85.4
ATR0580G036 Amborella trichopoda HOM05D003384 ORTHO05D005024 5.3e-14 80.5 55 74.5
SEGI_27631 Sequoiadendron giganteum HOM05D003384 ORTHO05D005024 9.0e-14 79.7 55 74.5
CAN.G606.41 Capsicum annuum HOM05D003384 ORTHO05D005024 1.2e-13 79.3 55 74.5
ClCG07G004540 Citrullus lanatus HOM05D003384 ORTHO05D005024 1.2e-13 79.3 55 74.5
Sc09g0005970 Simmondsia chinensis HOM05D003384 ORTHO05D005024 1.2e-13 79.3 55 74.5
Solyc01g107270.4 Solanum lycopersicum HOM05D003384 ORTHO05D005024 1.2e-13 79.3 55 74.5
vmacro20478 Vaccinium macrocarpon HOM05D003384 ORTHO05D005024 1.5e-13 79.0 55 74.5
Lalb_Chr18g0053121 Lupinus albus HOM05D003384 ORTHO05D005024 2.0e-13 78.6 55 70.9
Rhsim08G0242600 Rhododendron simsii HOM05D003384 ORTHO05D005024 2.0e-13 78.6 55 72.7
Rhsim10G0184100 Rhododendron simsii HOM05D003384 ORTHO05D005024 2.0e-13 78.6 55 72.7
Hund07041 Selenicereus undatus HOM05D003384 ORTHO05D005024 2.0e-13 78.6 55 74.5
HanXRQChr08g0232581 Helianthus annuus HOM05D003384 ORTHO05D005024 2.6e-13 78.2 55 72.7
Lj8C80T4 Lonicera japonica HOM05D003384 ORTHO05D005024 2.6e-13 78.2 55 70.9
SMO009G0025 Selaginella moellendorffii HOM05D003384 ORTHO05D378488 2.6e-13 78.2 47 85.1
Zm00001eb067720 Zea mays HOM05D003384 ORTHO05D005024 2.6e-13 78.2 55 74.5
Duzib093G0913 Durio zibethinus HOM05D003384 ORTHO05D005024 3.4e-13 77.8 55 70.9
Gohir.A04G076000 Gossypium hirsutum HOM05D003384 ORTHO05D005024 3.4e-13 77.8 55 70.9
Gohir.A06G008900 Gossypium hirsutum HOM05D003384 ORTHO05D005024 3.4e-13 77.8 55 70.9
Gohir.D04G115100 Gossypium hirsutum HOM05D003384 ORTHO05D005024 3.4e-13 77.8 55 70.9
Gorai.009G419700 Gossypium raimondii HOM05D003384 ORTHO05D005024 3.4e-13 77.8 55 70.9
Potri.010G200200 Populus trichocarpa HOM05D003384 ORTHO05D005024 3.4e-13 77.8 55 72.7
Sabra10G0154400 Salix brachista HOM05D003384 ORTHO05D005024 3.4e-13 77.8 55 72.7
Thecc.05G055600 Theobroma cacao HOM05D003384 ORTHO05D005024 3.4e-13 77.8 55 70.9
Zm00001eb055170 Zea mays HOM05D003384 ORTHO05D005024 3.4e-13 77.8 55 72.7
ECA246G5320 Erigeron canadensis HOM05D003384 ORTHO05D005024 4.5e-13 77.4 55 70.9
Lalb_Chr15g0084621 Lupinus albus HOM05D003384 ORTHO05D005024 4.5e-13 77.4 55 69.1
Oeu001502.2 Olea europaea HOM05D003384 ORTHO05D005024 4.5e-13 77.4 55 72.7
EL10Ac2g04005 Beta vulgaris HOM05D003384 ORTHO05D005024 5.9e-13 77.0 55 72.7
Os01g0888500 Oryza sativa ssp. japonica HOM05D003384 ORTHO05D005024 5.9e-13 77.0 55 72.7
Os05g0104650 Oryza sativa ssp. japonica HOM05D003384 ORTHO05D005024 5.9e-13 77.0 55 72.7
ClCG07G004570 Citrullus lanatus HOM05D003384 ORTHO05D005024 7.6e-13 76.6 55 70.9
Ciclev10030516m.g Citrus clementina HOM05D003384 ORTHO05D005024 7.6e-13 76.6 55 70.9
COL.COLO4_27063 Corchorus olitorius HOM05D003384 ORTHO05D005024 7.6e-13 76.6 55 69.1
Lsat_1_v5_gn_6_96581 Lactuca sativa HOM05D003384 ORTHO05D005024 7.6e-13 76.6 55 70.9
Lj1C941G12 Lonicera japonica HOM05D003384 ORTHO05D005024 7.6e-13 76.6 55 70.9
Prupe.8G024000 Prunus persica HOM05D003384 ORTHO05D005024 7.6e-13 76.6 55 69.1
SMO036G0002 Selaginella moellendorffii HOM05D003384 ORTHO05D374652 7.6e-13 76.6 47 83.0
SMO077G0006 Selaginella moellendorffii HOM05D003384 ORTHO05D018108 7.6e-13 76.6 47 83.0
SMO112G0025 Selaginella moellendorffii HOM05D003384 ORTHO05D378420 7.6e-13 76.6 47 83.0
SMO353G0290 Selaginella moellendorffii HOM05D003384 ORTHO05D018108 7.6e-13 76.6 47 83.0
SGA_v2.0_scaffold2G01034 Striga asiatica HOM05D003384 ORTHO05D005024 7.6e-13 76.6 55 70.9
TWI18G1054 Tripterygium wilfordii HOM05D003384 ORTHO05D005024 7.6e-13 76.6 55 70.9
Ah.03g145450 Amaranthus hybridus HOM05D003384 ORTHO05D005024 1.0e-12 76.3 55 70.9
Cfa014646 Carpinus fangiana HOM05D003384 ORTHO05D005024 1.0e-12 76.3 55 70.9
AUR62002272 Chenopodium quinoa HOM05D003384 ORTHO05D005024 1.0e-12 76.3 55 70.9
AUR62034627 Chenopodium quinoa HOM05D003384 ORTHO05D005024 1.0e-12 76.3 55 70.9
AUR62042439 Chenopodium quinoa HOM05D003384 ORTHO05D005024 1.0e-12 76.3 55 70.9
Migut.F00756 Erythranthe guttata HOM05D003384 ORTHO05D005024 1.0e-12 76.3 55 69.1
Nitab4.5_0000333g0100 Nicotiana tabacum HOM05D003384 ORTHO05D005024 1.0e-12 76.3 55 70.9
Actinidia02926 Actinidia chinensis HOM05D003384 ORTHO05D005024 1.3e-12 75.9 55 70.9
Carub.0002s2105 Capsella rubella HOM05D003384 ORTHO05D005024 1.3e-12 75.9 55 69.1
Cfa001433 Carpinus fangiana HOM05D003384 ORTHO05D005024 1.3e-12 75.9 55 70.9
Haze_17110 Corylus avellana HOM05D003384 ORTHO05D005024 1.3e-12 75.9 55 70.9
Eucgr.I00206 Eucalyptus grandis HOM05D003384 ORTHO05D005024 1.3e-12 75.9 55 70.9
FvH4_5g19530 Fragaria vesca HOM05D003384 ORTHO05D005024 1.3e-12 75.9 55 72.7
FAN18G2272 Fragaria x ananassa HOM05D003384 ORTHO05D005024 1.3e-12 75.9 55 72.7
FAN18G2911 Fragaria x ananassa HOM05D003384 ORTHO05D005024 1.3e-12 75.9 55 72.7
HanXRQChr05g0161141 Helianthus annuus HOM05D003384 ORTHO05D005024 1.3e-12 75.9 55 69.1
Hma1.2p1_0998F.1_g246010 Hydrangea macrophylla HOM05D003384 ORTHO05D005024 1.3e-12 75.9 55 69.1
Lj2g0004466 Lotus japonicus HOM05D003384 ORTHO05D005024 1.3e-12 75.9 55 69.1
Nitab4.5_0001169g0010 Nicotiana tabacum HOM05D003384 ORTHO05D005024 1.3e-12 75.9 55 70.9
SalBow6G5425 Salvia bowleyana HOM05D003384 ORTHO05D005024 1.3e-12 75.9 55 69.1
BcaC08g45597 Brassica carinata HOM05D003384 ORTHO05D005024 1.7e-12 75.5 55 69.1
BcaC08g46858 Brassica carinata HOM05D003384 ORTHO05D005024 1.7e-12 75.5 55 69.1
A07p40090 Brassica napus HOM05D003384 ORTHO05D005024 1.7e-12 75.5 55 69.1
C06p33470 Brassica napus HOM05D003384 ORTHO05D005024 1.7e-12 75.5 55 69.1
C06p48450 Brassica napus HOM05D003384 ORTHO05D005024 1.7e-12 75.5 55 69.1
BolC6t38461H Brassica oleracea HOM05D003384 ORTHO05D005024 1.7e-12 75.5 55 69.1
BolC6t39873H Brassica oleracea HOM05D003384 ORTHO05D005024 1.7e-12 75.5 55 69.1
BraA07t30586Z Brassica rapa HOM05D003384 ORTHO05D005024 1.7e-12 75.5 55 69.1
BraA07t31553Z Brassica rapa HOM05D003384 ORTHO05D005024 1.7e-12 75.5 55 69.1
Cc07_g16480 Coffea canephora HOM05D003384 ORTHO05D005024 1.7e-12 75.5 55 69.1
DCAR_011724 Daucus carota HOM05D003384 ORTHO05D005024 1.7e-12 75.5 55 69.1
Peaxi162Scf00668g00439 Petunia axillaris HOM05D003384 ORTHO05D005024 1.7e-12 75.5 55 69.1
Peaxi162Scf00685g00122 Petunia axillaris HOM05D003384 ORTHO05D005024 1.7e-12 75.5 55 69.1
Potri.008G058600 Populus trichocarpa HOM05D003384 ORTHO05D005024 1.7e-12 75.5 55 70.9
PGR004G0663 Punica granatum HOM05D003384 ORTHO05D005024 1.7e-12 75.5 55 70.9
TPR.G25489 Trifolium pratense HOM05D003384 ORTHO05D005024 2.2e-12 75.1 55 67.3
CAN.G370.86 Capsicum annuum HOM05D003384 ORTHO05D005024 2.9e-12 74.7 55 69.1
Lj6g0002532 Lotus japonicus HOM05D003384 ORTHO05D005024 2.9e-12 74.7 55 67.3
PSO478G4441 Papaver somniferum HOM05D003384 ORTHO05D005024 2.9e-12 74.7 55 70.9
PSO782G4051 Papaver somniferum HOM05D003384 ORTHO05D005024 2.9e-12 74.7 55 70.9
QL08p061129 Quercus lobata HOM05D003384 ORTHO05D005024 2.9e-12 74.7 55 69.1
SalBow6G5500 Salvia bowleyana HOM05D003384 ORTHO05D005024 2.9e-12 74.7 55 67.3
PGSC0003DMG400025849 Solanum tuberosum HOM05D003384 ORTHO05D005024 2.9e-12 74.7 55 70.9
TPR.G18022 Trifolium pratense HOM05D003384 ORTHO05D005024 2.9e-12 74.7 55 67.3
TAR633G2052 Trochodendron aralioides HOM05D003384 ORTHO05D005024 2.9e-12 74.7 55 69.1
GSVIVG01016499001 Vitis vinifera HOM05D003384 ORTHO05D005024 2.9e-12 74.7 55 69.1
Dinv42277 Davidia involucrata HOM05D003384 ORTHO05D005024 3.8e-12 74.3 55 69.1
MD04G1022300 Malus domestica HOM05D003384 ORTHO05D005024 3.8e-12 74.3 55 69.1
Prupe.1G542100 Prunus persica HOM05D003384 ORTHO05D005024 3.8e-12 74.3 55 69.1
AT1G74260 Arabidopsis thaliana HOM05D003384 ORTHO05D005024 5.0e-12 73.9 55 67.3
A07p29480 Brassica napus HOM05D003384 ORTHO05D005024 5.0e-12 73.9 55 67.3
CSS0027778 Camellia sinensis var. sinensis HOM05D003384 ORTHO05D005024 5.0e-12 73.9 55 67.3
CARHR067520 Cardamine hirsuta HOM05D003384 ORTHO05D005024 5.0e-12 73.9 55 67.3
AUR62009267 Chenopodium quinoa HOM05D003384 ORTHO05D005024 5.0e-12 73.9 55 69.1
Cre08.g364800 Chlamydomonas reinhardtii HOM05D003384 ORTHO05D005024 5.0e-12 73.9 55 69.1
Ca_17447_v3 Cicer arietinum L. HOM05D003384 ORTHO05D005024 5.0e-12 73.9 55 67.3
Ca_30022_v3 Cicer arietinum L. HOM05D003384 ORTHO05D005024 5.0e-12 73.9 55 67.3
Cc04_g11240 Coffea canephora HOM05D003384 ORTHO05D005024 5.0e-12 73.9 55 67.3
Thhalv10018011m.g Eutrema salsugineum HOM05D003384 ORTHO05D005024 5.0e-12 73.9 55 67.3
FAN04G2139 Fragaria x ananassa HOM05D003384 ORTHO05D005024 5.0e-12 73.9 55 70.9
FAN08G1276 Fragaria x ananassa HOM05D003384 ORTHO05D005024 5.0e-12 73.9 55 70.9
FAN13G0754 Fragaria x ananassa HOM05D003384 ORTHO05D005024 5.0e-12 73.9 55 70.9
MBI14_g11677_MAGBIO Magnolia biondii HOM05D003384 ORTHO05D005024 5.0e-12 73.9 55 69.1
Phvul.001G234500 Phaseolus vulgaris HOM05D003384 ORTHO05D005024 5.0e-12 73.9 55 67.3
Sp5g29440 Schrenkiella parvula HOM05D003384 ORTHO05D005024 5.0e-12 73.9 55 67.3
THA.LOC104816583 Tarenaya hassleriana HOM05D003384 ORTHO05D005024 5.0e-12 73.9 55 69.1
HPP92_005602 Vanilla planifolia HOM05D003384 ORTHO05D005024 5.0e-12 73.9 55 69.1
CiPaw.01G290900 Carya illinoinensis HOM05D003384 ORTHO05D005024 6.5e-12 73.6 55 69.1
Medtr6g011360 Medicago truncatula HOM05D003384 ORTHO05D005024 6.5e-12 73.6 55 65.5
Psat7g023040 Pisum sativum HOM05D003384 ORTHO05D005024 6.5e-12 73.6 55 65.5
Manes.10G027300 Manihot esculenta HOM05D003384 ORTHO05D005024 8.4e-12 73.2 55 69.1
RcHm_v2.0_Chr7g0204141 Rosa chinensis HOM05D003384 ORTHO05D005024 8.4e-12 73.2 55 69.1
Solyc02g076720.3 Solanum lycopersicum HOM05D003384 ORTHO05D005024 8.4e-12 73.2 55 69.1
Sopen02g021650 Solanum pennellii HOM05D003384 ORTHO05D005024 8.4e-12 73.2 55 69.1
Medtr8g100045 Medicago truncatula HOM05D003384 ORTHO05D005024 1.1e-11 72.8 55 65.5
AL2G34140 Arabidopsis lyrata HOM05D003384 ORTHO05D005024 1.4e-11 72.4 55 65.5
Glyma.11G221100 Glycine max HOM05D003384 ORTHO05D005024 1.4e-11 72.4 55 67.3
Glyma.18G036300 Glycine max HOM05D003384 ORTHO05D005024 1.4e-11 72.4 55 67.3
MD03G1203100 Malus domestica HOM05D003384 ORTHO05D005024 1.4e-11 72.4 55 67.3
CSS0047277 Camellia sinensis var. sinensis HOM05D003384 ORTHO05D005024 1.9e-11 72.0 55 67.3
Phvul.009G004700 Phaseolus vulgaris HOM05D003384 ORTHO05D005024 1.9e-11 72.0 55 67.3
PGSC0003DMG400010235 Solanum tuberosum HOM05D003384 ORTHO05D005024 1.9e-11 72.0 55 67.3
TAR629G0479 Trochodendron aralioides HOM05D003384 ORTHO05D005024 1.9e-11 72.0 55 67.3
VMungo1309G0201 Vigna mungo HOM05D003384 ORTHO05D005024 2.5e-11 71.6 55 69.1
Aa31LG7G13860 Aethionema arabicum HOM05D003384 ORTHO05D005024 3.2e-11 71.2 55 63.6
arahy.Tifrunner.gnm1.ann1.Z31J18 Arachis hypogaea HOM05D003384 ORTHO05D005024 4.2e-11 70.9 55 69.1
PSO837G0041 Papaver somniferum HOM05D003384 ORTHO05D005024 5.5e-11 70.5 55 67.3
PRCOL_00000695 Prasinoderma coloniale HOM05D003384 ORTHO05D005024 5.5e-11 70.5 55 67.3
CDE05G0219 Ceratophyllum demersum HOM05D003384 ORTHO05D005024 1.6e-10 68.9 55 63.6
CDE05G1365 Ceratophyllum demersum HOM05D003384 ORTHO05D005024 1.6e-10 68.9 55 63.6
VMungo1383G2986 Vigna mungo HOM05D003384 ORTHO05D005024 1.6e-10 68.9 55 63.6
Aqoxy1G00556 Aquilegia oxysepala HOM05D003384 ORTHO05D005024 2.7e-10 68.2 55 65.5
Aqoxy5G02953 Aquilegia oxysepala HOM05D003384 ORTHO05D005024 2.7e-10 68.2 55 65.5
MCO14G233 Micromonas commoda HOM05D003384 ORTHO05D005024 2.7e-10 68.2 55 61.8
SHI22710 Sapria himalayana HOM05D003384 ORTHO05D005024 6.1e-10 67.0 55 61.8
MD07G1195900 Malus domestica HOM05D003384 ORTHO05D005024 1.8e-09 65.5 57 57.9
SMO364G0055 Selaginella moellendorffii HOM05D003384 ORTHO05D018108 1.3e-07 59.3 33 90.9
SMO286G0001 Selaginella moellendorffii HOM05D003384 ORTHO05D374823 1.6e-07 58.9 35 85.7
SMO162G0012 Selaginella moellendorffii HOM05D003384 ORTHO05D375018 3.7e-07 57.8 33 87.9
SMO199G0120 Selaginella moellendorffii HOM05D003384 ORTHO05D376227 3.7e-07 57.8 33 87.9
SMO244G0098 Selaginella moellendorffii HOM05D003384 ORTHO05D376564 1.1e-06 56.2 33 84.8


User provided reference genes

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