Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO340G0043 Selaginella moellendorffii HOM05D031821 ORTHO05D036827 0.0e+00 1207.6 705 100.0
Pp3c13_17120 Physcomitrium patens HOM05D031821 ORTHO05D036827 2.9e-49 201.1 587 38.0
MCO06G067 Micromonas commoda HOM05D031821 ORTHO05D036827 5.0e-17 94.0 403 37.0
DCAR_004720 Daucus carota HOM05D001779 ORTHO05D001753 1.7e-09 68.9 156 28.2
Lj1g0021736 Lotus japonicus HOM05D001779 ORTHO05D001753 5.0e-09 67.4 156 30.1
Lalb_Chr19g0125661 Lupinus albus HOM05D001779 ORTHO05D001753 8.6e-09 66.6 156 30.1
Thhalv10004021m.g Eutrema salsugineum HOM05D001779 ORTHO05D001753 1.1e-08 66.2 156 29.5
Migut.N00010 Erythranthe guttata HOM05D001779 ORTHO05D001753 1.5e-08 65.9 209 25.4
Duzib138G0054 Durio zibethinus HOM05D001779 ORTHO05D001753 2.5e-08 65.1 223 27.8
Eucgr.K02161 Eucalyptus grandis HOM05D001779 ORTHO05D001753 2.5e-08 65.1 156 29.5
CAN.G649.15 Capsicum annuum HOM05D001779 ORTHO05D001753 3.3e-08 64.7 156 27.6
Manes.12G045500 Manihot esculenta HOM05D001779 ORTHO05D001753 3.3e-08 64.7 156 30.1
MSTRG.20959 Avicennia marina HOM05D001779 ORTHO05D001753 4.3e-08 64.3 156 29.5
Carub.0008s0848 Capsella rubella HOM05D001779 ORTHO05D001753 4.3e-08 64.3 156 28.8
Haze_15114 Corylus avellana HOM05D000891 ORTHO05D000761 4.3e-08 64.3 112 27.7
Rhsim13G0046000 Rhododendron simsii HOM05D001779 ORTHO05D001753 4.3e-08 64.3 156 29.5
Lsat_1_v5_gn_8_89800 Lactuca sativa HOM05D001779 ORTHO05D001753 5.6e-08 63.9 156 29.5
Nn7g38398 Nelumbo nucifera HOM05D000001 ORTHO05D010268 5.6e-08 63.9 167 28.1
Sp2g19140 Schrenkiella parvula HOM05D001779 ORTHO05D001753 5.6e-08 63.9 156 28.2
Sc19g0002120 Simmondsia chinensis HOM05D001779 ORTHO05D001753 7.3e-08 63.5 154 28.6
BcaB07g30086 Brassica carinata HOM05D007093 ORTHO05D008910 9.5e-08 63.2 160 25.6
Dinv12682 Davidia involucrata HOM05D001779 ORTHO05D001753 1.2e-07 62.8 156 28.8
Gohir.A11G138700 Gossypium hirsutum HOM05D001779 ORTHO05D001753 1.2e-07 62.8 226 25.7
MBI07_g05481_MAGBIO Magnolia biondii HOM05D001779 ORTHO05D001753 1.2e-07 62.8 155 28.4
SGA_v2.0_scaffold123G33423 Striga asiatica HOM05D001779 ORTHO05D001753 1.2e-07 62.8 194 27.3
arahy.Tifrunner.gnm1.ann1.P8X82K Arachis hypogaea HOM05D001779 ORTHO05D001753 1.6e-07 62.4 156 29.5
Ca_26872_v3 Cicer arietinum L. HOM05D001779 ORTHO05D001753 1.6e-07 62.4 142 29.6
CsaV3_7G026080 Cucumis sativus L. HOM05D001779 ORTHO05D001753 1.6e-07 62.4 156 28.8
Medtr7g056613 Medicago truncatula HOM05D001779 ORTHO05D001753 1.6e-07 62.4 156 28.2
Thecc.01G224400 Theobroma cacao HOM05D001779 ORTHO05D001753 1.6e-07 62.4 223 27.4
unitig_8.g2885 Utricularia gibba HOM05D001779 ORTHO05D001753 1.6e-07 62.4 184 25.0
QL06p014037 Quercus lobata HOM05D001779 ORTHO05D001753 2.1e-07 62.0 168 28.0
AagrBONN_evm.TU.Sc2ySwM_368.1221 Anthoceros agrestis HOM05D000001 ORTHO05D000003 2.8e-07 61.6 148 25.0
arahy.Tifrunner.gnm1.ann1.X6Z628 Arachis hypogaea HOM05D001779 ORTHO05D001753 3.6e-07 61.2 156 28.8
MSTRG.19138 Avicennia marina HOM05D000855 ORTHO05D008530 3.6e-07 61.2 135 31.9
Cpa.g.sc8.143 Carica papaya HOM05D001779 ORTHO05D001753 3.6e-07 61.2 206 27.7
ClCG09G008970 Citrullus lanatus HOM05D001779 ORTHO05D001753 3.6e-07 61.2 156 28.8
MELO3C021027.2 Cucumis melo HOM05D001779 ORTHO05D001753 3.6e-07 61.2 156 28.8
Gohir.D11G144900 Gossypium hirsutum HOM05D001779 ORTHO05D001753 3.6e-07 61.2 220 27.3
Nitab4.5_0001568g0160 Nicotiana tabacum HOM05D001779 ORTHO05D001753 3.6e-07 61.2 156 28.2
Peaxi162Scf00403g00211 Petunia axillaris HOM05D001779 ORTHO05D001753 3.6e-07 61.2 156 27.6
SGA_v2.0_scaffold171G38942 Striga asiatica HOM05D001779 ORTHO05D001753 3.6e-07 61.2 156 27.6
CDE12G0140 Ceratophyllum demersum HOM05D001779 ORTHO05D001753 4.7e-07 60.8 155 29.7
Ciclev10011344m.g Citrus clementina HOM05D007093 ORTHO05D008910 4.7e-07 60.8 160 26.9
TWI18G0520 Tripterygium wilfordii HOM05D001779 ORTHO05D001753 4.7e-07 60.8 156 28.8
CiPaw.04G104900 Carya illinoinensis HOM05D001779 ORTHO05D001753 6.1e-07 60.5 156 28.8
MELO3C032877.2 Cucumis melo HOM05D000001 ORTHO05D010268 6.1e-07 60.5 212 25.9
Migut.K01514 Erythranthe guttata HOM05D001779 ORTHO05D001753 6.1e-07 60.5 194 26.3
FvH4_6g15290 Fragaria vesca HOM05D000855 ORTHO05D008530 6.1e-07 60.5 169 29.0
FAN04G2077 Fragaria x ananassa HOM05D001779 ORTHO05D001753 6.1e-07 60.5 156 28.8
FAN08G2977 Fragaria x ananassa HOM05D001779 ORTHO05D001753 6.1e-07 60.5 156 28.2
FAN18G1972 Fragaria x ananassa HOM05D001779 ORTHO05D001753 6.1e-07 60.5 156 28.2
Nitab4.5_0001146g0150 Nicotiana tabacum HOM05D001779 ORTHO05D001753 6.1e-07 60.5 156 27.6
Potri.002G243600 Populus trichocarpa HOM05D001779 ORTHO05D001753 6.1e-07 60.5 156 27.6
Prupe.6G241600 Prunus persica HOM05D000855 ORTHO05D008530 6.1e-07 60.5 169 28.4
Prupe.8G201700 Prunus persica HOM05D001779 ORTHO05D001753 6.1e-07 60.5 204 27.5
FvH4_5g33190 Fragaria vesca HOM05D001779 ORTHO05D001753 8.0e-07 60.1 156 28.2
Lsat_1_v5_gn_6_71420 Lactuca sativa HOM05D001779 ORTHO05D001753 8.0e-07 60.1 385 19.7
QL09p053959 Quercus lobata HOM05D001779 ORTHO05D001753 8.0e-07 60.1 162 28.4
RcHm_v2.0_Chr7g0231531 Rosa chinensis HOM05D001779 ORTHO05D001753 8.0e-07 60.1 156 28.8
Solyc01g006500.4 Solanum lycopersicum HOM05D001779 ORTHO05D001753 8.0e-07 60.1 156 27.6
TPR.G31105 Trifolium pratense HOM05D001779 ORTHO05D001753 8.0e-07 60.1 142 28.9
AagrBONN_evm.TU.Sc2ySwM_344.2113 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.0e-06 59.7 426 20.0
AagrBONN_evm.TU.Sc2ySwM_344.3513 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.0e-06 59.7 431 17.4
Glyma.10G049200 Glycine max HOM05D000855 ORTHO05D008530 1.0e-06 59.7 169 27.8
Gorai.007G155400 Gossypium raimondii HOM05D001779 ORTHO05D001753 1.0e-06 59.7 220 26.8
Lj4A116G82 Lonicera japonica HOM05D007093 ORTHO05D008910 1.0e-06 59.7 141 29.1
Sed0017496 Sechium edule HOM05D000855 ORTHO05D008530 1.0e-06 59.7 139 31.7
HPP92_023347 Vanilla planifolia HOM05D001779 ORTHO05D001753 1.0e-06 59.7 209 27.3
AagrBONN_evm.TU.Sc2ySwM_344.4216 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.4e-06 59.3 434 18.9
Aqoxy5G00031 Aquilegia oxysepala HOM05D001779 ORTHO05D001753 1.4e-06 59.3 155 27.1
COL.COLO4_34526 Corchorus olitorius HOM05D001779 ORTHO05D001753 1.4e-06 59.3 154 27.3
Dinv08369 Davidia involucrata HOM05D000001 ORTHO05D009069 1.4e-06 59.3 188 29.8
MBI16_g10277_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D030056 1.4e-06 59.3 168 25.6
PSO339G3775 Papaver somniferum HOM05D000855 ORTHO05D008530 1.4e-06 59.3 135 31.1
RcHm_v2.0_Chr5g0021571 Rosa chinensis HOM05D000001 ORTHO05D029648 1.4e-06 59.3 205 25.4
SMO340G0075 Selaginella moellendorffii HOM05D005996 ORTHO05D007507 1.4e-06 59.3 150 28.7
Sopen01g002480 Solanum pennellii HOM05D001779 ORTHO05D001753 1.4e-06 59.3 156 26.9
PGSC0003DMG400032206 Solanum tuberosum HOM05D001779 ORTHO05D001753 1.4e-06 59.3 156 26.9
GSVIVG01017677001 Vitis vinifera HOM05D001779 ORTHO05D001753 1.4e-06 59.3 185 25.4
Aqoxy2G02534 Aquilegia oxysepala HOM05D001779 ORTHO05D001753 1.8e-06 58.9 155 29.0
AT5G48730 Arabidopsis thaliana HOM05D001779 ORTHO05D001753 1.8e-06 58.9 156 26.9
Cfa002578 Carpinus fangiana HOM05D001779 ORTHO05D001753 1.8e-06 58.9 156 26.9
AUR62040432 Chenopodium quinoa HOM05D000001 ORTHO05D009069 1.8e-06 58.9 191 27.7
Cc01_g16930 Coffea canephora HOM05D001779 ORTHO05D001753 1.8e-06 58.9 156 26.9
Dinv29518 Davidia involucrata HOM05D001779 ORTHO05D001753 1.8e-06 58.9 205 23.4
Dinv35708 Davidia involucrata HOM05D000855 ORTHO05D008530 1.8e-06 58.9 135 30.4
FAN02G3427 Fragaria x ananassa HOM05D000855 ORTHO05D008530 1.8e-06 58.9 169 29.0
HanXRQChr08g0236261 Helianthus annuus HOM05D001779 ORTHO05D001753 1.8e-06 58.9 154 25.3
Sabra02G0185300 Salix brachista HOM05D002628 ORTHO05D002785 1.8e-06 58.9 156 26.3
CARHR084060 Cardamine hirsuta HOM05D000855 ORTHO05D008530 2.3e-06 58.5 135 31.9
AUR62024044 Chenopodium quinoa HOM05D000001 ORTHO05D009069 2.3e-06 58.5 191 27.7
FAN09G2418 Fragaria x ananassa HOM05D000855 ORTHO05D008530 2.3e-06 58.5 169 29.0
FAN14G2211 Fragaria x ananassa HOM05D000855 ORTHO05D008530 2.3e-06 58.5 169 29.0
Lsat_1_v5_gn_1_39801 Lactuca sativa HOM05D001779 ORTHO05D001753 2.3e-06 58.5 170 24.7
Manes.08G003100 Manihot esculenta HOM05D000855 ORTHO05D008530 2.3e-06 58.5 135 31.1
Ah.07g203760 Amaranthus hybridus HOM05D001779 ORTHO05D001753 3.1e-06 58.2 162 27.8
AagrBONN_evm.TU.Sc2ySwM_228.4202 Anthoceros agrestis HOM05D000001 ORTHO05D000003 3.1e-06 58.2 410 19.8
Aqoxy4G03187 Aquilegia oxysepala HOM05D000855 ORTHO05D008530 3.1e-06 58.2 425 18.6
AL8G21830 Arabidopsis lyrata HOM05D001779 ORTHO05D001753 3.1e-06 58.2 204 26.0
Migut.I00204 Erythranthe guttata HOM05D000001 ORTHO05D000003 3.1e-06 58.2 163 29.4
Lj6A699G68 Lonicera japonica HOM05D001779 ORTHO05D001753 3.1e-06 58.2 184 25.0
AagrBONN_evm.TU.Sc2ySwM_369.151 Anthoceros agrestis HOM05D000001 ORTHO05D000003 4.0e-06 57.8 155 24.5
EL10Ac3g06265 Beta vulgaris HOM05D001779 ORTHO05D001753 4.0e-06 57.8 155 27.1
Haze_00787 Corylus avellana HOM05D000159 ORTHO05D002729 4.0e-06 57.8 168 28.0
ECA236G0552 Erigeron canadensis HOM05D001779 ORTHO05D001753 4.0e-06 57.8 156 28.2
Lj4g0021408 Lotus japonicus HOM05D003900 ORTHO05D015804 4.0e-06 57.8 163 28.8
MD10G1163400 Malus domestica HOM05D001779 ORTHO05D001753 4.0e-06 57.8 245 24.9
VMungo0720G3091 Vigna mungo HOM05D000855 ORTHO05D008530 4.0e-06 57.8 169 27.2
GSVIVG01028689001 Vitis vinifera HOM05D001779 ORTHO05D001753 4.0e-06 57.8 156 28.2
ATR0626G121 Amborella trichopoda HOM05D001779 ORTHO05D001753 5.2e-06 57.4 204 25.0
Gohir.A01G206700 Gossypium hirsutum HOM05D000001 ORTHO05D000003 5.2e-06 57.4 122 32.0
Gohir.A10G176300 Gossypium hirsutum HOM05D001779 ORTHO05D001753 5.2e-06 57.4 154 26.6
Gorai.011G205100 Gossypium raimondii HOM05D001779 ORTHO05D001753 5.2e-06 57.4 154 26.6
Lj6g0005216 Lotus japonicus HOM05D001779 ORTHO05D001753 5.2e-06 57.4 154 27.9
Manes.03G211100 Manihot esculenta HOM05D001779 ORTHO05D001753 5.2e-06 57.4 154 26.6
SalBow6G5562 Salvia bowleyana HOM05D001779 ORTHO05D001753 5.2e-06 57.4 167 26.3
SGA_v2.0_scaffold69G23099 Striga asiatica HOM05D000001 ORTHO05D009340 5.2e-06 57.4 163 25.8
TPR.G30250 Trifolium pratense HOM05D000855 ORTHO05D008530 5.2e-06 57.4 159 30.2
AagrBONN_evm.TU.Sc2ySwM_369.575 Anthoceros agrestis HOM05D000001 ORTHO05D000003 6.8e-06 57.0 146 24.0
Haze_24811 Corylus avellana HOM05D001779 ORTHO05D001753 6.8e-06 57.0 156 26.9
Eucgr.K03209 Eucalyptus grandis HOM05D000855 ORTHO05D008530 6.8e-06 57.0 169 28.4
MBI12_g25034_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D000003 6.8e-06 57.0 374 20.6
RcHm_v2.0_Chr1g0346171 Rosa chinensis HOM05D000104 ORTHO05D009920 6.8e-06 57.0 146 30.1
Zm00001eb229640 Zea mays HOM05D006740 ORTHO05D008571 6.8e-06 57.0 151 25.8
Atru.BG.218.p Acer truncatum HOM05D000855 ORTHO05D008530 8.9e-06 56.6 169 27.8
Aa31LG3G2070 Aethionema arabicum HOM05D000855 ORTHO05D008530 8.9e-06 56.6 135 31.1
AagrBONN_evm.TU.Sc2ySwM_228.1439 Anthoceros agrestis HOM05D000001 ORTHO05D000003 8.9e-06 56.6 157 26.8
Migut.J00415 Erythranthe guttata HOM05D000855 ORTHO05D008530 8.9e-06 56.6 135 30.4
Thhalv10011247m.g Eutrema salsugineum HOM05D000001 ORTHO05D000003 8.9e-06 56.6 160 27.5
FAN12G3192 Fragaria x ananassa HOM05D000001 ORTHO05D011120 8.9e-06 56.6 170 26.5
FAN22G2223 Fragaria x ananassa HOM05D000001 ORTHO05D011120 8.9e-06 56.6 170 26.5
Gohir.D01G196100 Gossypium hirsutum HOM05D000001 ORTHO05D000003 8.9e-06 56.6 122 31.1
Medtr1g066900 Medicago truncatula HOM05D000855 ORTHO05D008530 8.9e-06 56.6 319 20.7
Phvul.007G163500 Phaseolus vulgaris HOM05D000855 ORTHO05D008530 8.9e-06 56.6 169 27.2
SEGI_28807 Sequoiadendron giganteum HOM05D007093 ORTHO05D008910 8.9e-06 56.6 142 29.6


User provided reference genes

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