Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO339G0034 Selaginella moellendorffii HOM05D006460 ORTHO05D008143 5.6e-118 427.6 205 100.0
SMO010G0007 Selaginella moellendorffii HOM05D006460 ORTHO05D008143 1.3e-111 406.4 234 85.5
AagrBONN_evm.TU.Sc2ySwM_344.3324 Anthoceros agrestis HOM05D006460 ORTHO05D008143 2.2e-50 203.0 227 47.1
Nitab4.5_0002994g0020 Nicotiana tabacum HOM05D006460 ORTHO05D008143 2.9e-50 202.6 190 50.0
AagrBONN_evm.TU.Sc2ySwM_228.322 Anthoceros agrestis HOM05D006460 ORTHO05D008143 4.2e-49 198.7 229 45.0
Mapoly0095s0050 Marchantia polymorpha HOM05D006460 ORTHO05D008143 1.6e-48 196.8 249 43.4
THA.LOC104801320 Tarenaya hassleriana HOM05D006460 ORTHO05D008143 3.7e-45 185.7 238 41.2
PGR083G0788 Punica granatum HOM05D006460 ORTHO05D008143 6.3e-45 184.9 217 42.4
CSS0037090 Camellia sinensis var. sinensis HOM05D006460 ORTHO05D008143 8.2e-45 184.5 253 39.9
ATR0796G118 Amborella trichopoda HOM05D006460 ORTHO05D008143 1.1e-44 184.1 251 39.8
Thhalv10028644m.g Eutrema salsugineum HOM05D006460 ORTHO05D008143 1.1e-44 184.1 216 42.6
Thhalv10028645m.g Eutrema salsugineum HOM05D006460 ORTHO05D008143 1.1e-44 184.1 216 42.6
Sabra02G0165800 Salix brachista HOM05D006460 ORTHO05D008143 1.1e-44 184.1 247 39.7
Phvul.003G019300 Phaseolus vulgaris HOM05D006460 ORTHO05D008143 1.4e-44 183.7 248 41.1
C03p38430 Brassica napus HOM05D006460 ORTHO05D008143 1.8e-44 183.3 231 41.6
Prupe.3G004500 Prunus persica HOM05D006460 ORTHO05D008143 1.8e-44 183.3 242 39.7
BcaC01g06799 Brassica carinata HOM05D006460 ORTHO05D008143 2.4e-44 183.0 231 41.6
A03p31440 Brassica napus HOM05D006460 ORTHO05D008143 2.4e-44 183.0 211 42.7
BolC3t16117H Brassica oleracea HOM05D006460 ORTHO05D008143 2.4e-44 183.0 231 41.6
MD09G1293200 Malus domestica HOM05D006460 ORTHO05D008143 2.4e-44 183.0 241 39.8
Aqoxy5G02768 Aquilegia oxysepala HOM05D006460 ORTHO05D008143 3.1e-44 182.6 247 41.3
Lalb_Chr17g0338451 Lupinus albus HOM05D006460 ORTHO05D008143 3.1e-44 182.6 248 39.9
Nitab4.5_0000222g0270 Nicotiana tabacum HOM05D006460 ORTHO05D008143 3.1e-44 182.6 219 42.0
Migut.D00030 Erythranthe guttata HOM05D006460 ORTHO05D008143 4.1e-44 182.2 246 39.4
BcaB01g02385 Brassica carinata HOM05D006460 ORTHO05D008143 6.9e-44 181.4 215 42.3
CSS0008981 Camellia sinensis var. sinensis HOM05D006460 ORTHO05D008143 6.9e-44 181.4 253 39.5
HanXRQChr13g0414441 Helianthus annuus HOM05D006460 ORTHO05D008143 6.9e-44 181.4 218 42.7
Pp3c21_16200 Physcomitrium patens HOM05D006460 ORTHO05D008143 6.9e-44 181.4 245 41.2
BraA03t12325Z Brassica rapa HOM05D006460 ORTHO05D008143 9.1e-44 181.0 211 42.2
Dinv33158 Davidia involucrata HOM05D001974 ORTHO05D001995 9.1e-44 181.0 245 39.6
Atru.chr5.915 Acer truncatum HOM05D006460 ORTHO05D008143 1.2e-43 180.6 223 41.3
CANSAT56G1882 Cannabis sativa HOM05D006460 ORTHO05D008143 1.2e-43 180.6 246 39.4
Sp6g01720 Schrenkiella parvula HOM05D006460 ORTHO05D008143 1.2e-43 180.6 235 40.4
GSVIVG01028196001 Vitis vinifera HOM05D006460 ORTHO05D008143 1.2e-43 180.6 249 39.8
ECA236G0789 Erigeron canadensis HOM05D004810 ORTHO05D006272 1.5e-43 180.3 237 40.9
VMungo1215G1636 Vigna mungo HOM05D006460 ORTHO05D008143 1.5e-43 180.3 249 40.6
Zm00001eb211340 Zea mays HOM05D006460 ORTHO05D008143 1.5e-43 180.3 229 39.3
Duzib138G1376 Durio zibethinus HOM05D006460 ORTHO05D008143 2.0e-43 179.9 223 41.7
Gorai.001G146600 Gossypium raimondii HOM05D006460 ORTHO05D008143 2.0e-43 179.9 223 40.4
Eucgr.H00886 Eucalyptus grandis HOM05D006460 ORTHO05D008143 2.6e-43 179.5 243 39.1
Eucgr.L00887 Eucalyptus grandis HOM05D006460 ORTHO05D008143 2.6e-43 179.5 243 39.1
CARHR249840 Cardamine hirsuta HOM05D006460 ORTHO05D008143 3.4e-43 179.1 237 39.7
Potri.002G189800 Populus trichocarpa HOM05D006460 ORTHO05D008143 3.4e-43 179.1 247 39.3
Aa31LG5G1480 Aethionema arabicum HOM05D006460 ORTHO05D008143 4.5e-43 178.7 243 38.3
arahy.Tifrunner.gnm1.ann1.R72PZK Arachis hypogaea HOM05D006460 ORTHO05D008143 4.5e-43 178.7 246 39.8
Solyc01g068050.3 Solanum lycopersicum HOM05D006460 ORTHO05D008143 4.5e-43 178.7 229 41.0
Gohir.D07G134900 Gossypium hirsutum HOM05D006460 ORTHO05D008143 5.9e-43 178.3 223 39.9
PGSC0003DMG400005211 Solanum tuberosum HOM05D006460 ORTHO05D008143 5.9e-43 178.3 229 41.0
CiPaw.04G089700 Carya illinoinensis HOM05D006460 ORTHO05D008143 7.7e-43 177.9 225 41.3
Carub.0006s3536 Capsella rubella HOM05D006460 ORTHO05D008143 1.0e-42 177.6 211 42.2
QL12p034319 Quercus lobata HOM05D006460 ORTHO05D008143 1.0e-42 177.6 227 40.1
Rhsim13G0001100 Rhododendron simsii HOM05D006460 ORTHO05D008143 1.0e-42 177.6 249 39.8
Ciclev10001046m.g Citrus clementina HOM05D006460 ORTHO05D008143 1.3e-42 177.2 221 40.7
Cc01_g21920 Coffea canephora HOM05D006460 ORTHO05D008143 1.3e-42 177.2 248 39.9
TAR362G0080 Trochodendron aralioides HOM05D006460 ORTHO05D008143 1.3e-42 177.2 254 40.2
AL6G51420 Arabidopsis lyrata HOM05D006460 ORTHO05D008143 1.7e-42 176.8 236 39.8
Cpa.g.sc543.2 Carica papaya HOM05D006460 ORTHO05D008143 1.7e-42 176.8 242 38.8
CDE08G1018 Ceratophyllum demersum HOM05D006460 ORTHO05D008143 2.2e-42 176.4 241 40.7
Lsat_1_v5_gn_8_167341 Lactuca sativa HOM05D006460 ORTHO05D008143 2.2e-42 176.4 230 39.6
Actinidia21358 Actinidia chinensis HOM05D006460 ORTHO05D008143 2.9e-42 176.0 242 39.3
RcHm_v2.0_Chr3g0486571 Rosa chinensis HOM05D006460 ORTHO05D008143 2.9e-42 176.0 253 37.2
Sed0027463 Sechium edule HOM05D006460 ORTHO05D008143 2.9e-42 176.0 225 40.0
HPP92_010877 Vanilla planifolia HOM05D000746 ORTHO05D000573 2.9e-42 176.0 247 39.7
Haze_05122 Corylus avellana HOM05D006460 ORTHO05D008143 3.8e-42 175.6 227 40.1
Glyma.07G170000 Glycine max HOM05D006460 ORTHO05D008143 3.8e-42 175.6 246 39.4
Oeu002575.1 Olea europaea HOM05D006460 ORTHO05D008143 3.8e-42 175.6 230 40.0
SalBow6G2760 Salvia bowleyana HOM05D006460 ORTHO05D008143 3.8e-42 175.6 233 39.5
CsaV3_7G030430 Cucumis sativus L. HOM05D006460 ORTHO05D008143 5.0e-42 175.3 232 39.7
Medtr1g032120 Medicago truncatula HOM05D006460 ORTHO05D008143 5.0e-42 175.3 249 39.0
Nn4g25417 Nelumbo nucifera HOM05D006460 ORTHO05D008143 5.0e-42 175.3 242 38.8
Thecc.01G322200 Theobroma cacao HOM05D006460 ORTHO05D008143 5.0e-42 175.3 245 38.4
FvH4_1g26500 Fragaria vesca HOM05D006460 ORTHO05D008143 6.5e-42 174.9 253 36.8
Psat6g046360 Pisum sativum HOM05D006460 ORTHO05D008143 8.5e-42 174.5 249 39.0
Manes.05G010900 Manihot esculenta HOM05D006460 ORTHO05D008143 1.1e-41 174.1 227 40.5
Sc17g0000180 Simmondsia chinensis HOM05D006460 ORTHO05D008143 1.1e-41 174.1 227 40.1
AT4G01880 Arabidopsis thaliana HOM05D006460 ORTHO05D008143 1.4e-41 173.7 216 41.2
CAN.G100.27 Capsicum annuum HOM05D006460 ORTHO05D008143 1.4e-41 173.7 228 40.4
Cfa004883 Carpinus fangiana HOM05D006460 ORTHO05D008143 3.2e-41 172.6 227 39.2
FAN19G0891 Fragaria x ananassa HOM05D006460 ORTHO05D008143 3.2e-41 172.6 253 36.4
Lj2g0013221 Lotus japonicus HOM05D006460 ORTHO05D008143 3.2e-41 172.6 249 39.8
TWI14G0400 Tripterygium wilfordii HOM05D006460 ORTHO05D008143 3.2e-41 172.6 247 39.3
Ca_12543_v3 Cicer arietinum L. HOM05D006460 ORTHO05D008143 7.2e-41 171.4 247 38.5
arahy.Tifrunner.gnm1.ann1.N25L3F Arachis hypogaea HOM05D006460 ORTHO05D008143 1.6e-40 170.2 273 36.3
COL.COLO4_23162 Corchorus olitorius HOM05D006460 ORTHO05D008143 1.6e-40 170.2 222 39.6
Lj1C11T12 Lonicera japonica HOM05D006460 ORTHO05D008143 1.6e-40 170.2 232 39.7
FAN28G1427 Fragaria x ananassa HOM05D006460 ORTHO05D008143 3.6e-40 169.1 253 36.0
DCAR_012316 Daucus carota HOM05D006460 ORTHO05D008143 4.7e-40 168.7 234 37.6
ClCG09G004700 Citrullus lanatus HOM05D006460 ORTHO05D008143 7.9e-40 167.9 240 38.3
FAN26G0500 Fragaria x ananassa HOM05D006460 ORTHO05D008143 1.0e-39 167.5 253 35.6
Hund09677 Selenicereus undatus HOM05D006460 ORTHO05D008143 2.3e-39 166.4 249 37.8
PSO170G6216 Papaver somniferum HOM05D006460 ORTHO05D008143 6.7e-39 164.9 222 38.3
PSO384G3244 Papaver somniferum HOM05D006460 ORTHO05D008143 3.3e-38 162.5 222 37.8
PSO357G0369 Papaver somniferum HOM05D006460 ORTHO05D008143 5.7e-38 161.8 222 37.8
AUR62024570 Chenopodium quinoa HOM05D006460 ORTHO05D008143 9.7e-38 161.0 219 38.8
AUR62011736 Chenopodium quinoa HOM05D006460 ORTHO05D008143 1.7e-37 160.2 222 38.3
MSTRG.21724 Avicennia marina HOM05D006460 ORTHO05D008143 4.8e-37 158.7 248 36.7
Gohir.A07G130500 Gossypium hirsutum HOM05D006460 ORTHO05D008143 6.3e-37 158.3 200 41.5
TPR.G36866 Trifolium pratense HOM05D006460 ORTHO05D008143 6.3e-37 158.3 209 41.1
vmacro02372 Vaccinium macrocarpon HOM05D006460 ORTHO05D008143 5.3e-36 155.2 301 32.2
EL10As5g23582 Beta vulgaris HOM05D006460 ORTHO05D008143 2.6e-35 152.9 236 37.3
Peaxi162Scf00919g00047 Petunia axillaris HOM05D006460 ORTHO05D008143 3.5e-35 152.5 206 40.3
Sopen01g029980 Solanum pennellii HOM05D006460 ORTHO05D008143 1.7e-34 150.2 200 40.0
SGA_v2.0_scaffold417G51258 Striga asiatica HOM05D006460 ORTHO05D008143 2.2e-34 149.8 251 35.1
MELO3C023610.2 Cucumis melo HOM05D006460 ORTHO05D008143 8.5e-34 147.9 207 39.6
SEGI_40178 Sequoiadendron giganteum HOM05D006460 ORTHO05D008143 3.0e-31 139.4 153 49.0
MBI18_g28900_MAGBIO Magnolia biondii HOM05D006460 ORTHO05D008143 5.0e-26 122.1 210 35.2
MCO13G012 Micromonas commoda HOM05D006460 ORTHO05D008143 3.6e-24 115.9 224 32.6
Os03g0833200 Oryza sativa ssp. japonica HOM05D006460 ORTHO05D008143 2.6e-22 109.8 120 45.0
AagrBONN_evm.TU.Sc2ySwM_228.45 Anthoceros agrestis HOM05D006460 ORTHO05D008143 1.3e-21 107.5 146 45.2
AUR62036055 Chenopodium quinoa HOM05D006460 ORTHO05D008143 1.4e-20 104.0 119 43.7
AUR62029044 Chenopodium quinoa HOM05D006460 ORTHO05D008143 3.1e-20 102.8 119 42.9
Ah.11g045760 Amaranthus hybridus HOM05D006460 ORTHO05D008143 2.7e-19 99.8 123 43.1
unitig_578.g16638 Utricularia gibba HOM05D006460 ORTHO05D008143 5.9e-19 98.6 104 47.1
PRCOL_00001885 Prasinoderma coloniale HOM05D006460 ORTHO05D008143 5.2e-15 85.5 197 31.0
CBR_g49426 Chara braunii HOM05D006460 ORTHO05D008143 2.7e-11 73.2 95 38.9
Cre16.g654992 Chlamydomonas reinhardtii HOM05D006460 ORTHO05D008143 3.3e-09 66.2 47 51.1
RcHm_v2.0_Chr7g0232271 Rosa chinensis HOM05D006460 ORTHO05D008143 3.6e-08 62.8 50 56.0
AUR62007801 Chenopodium quinoa HOM05D006460 ORTHO05D008143 6.1e-08 62.0 70 45.7


User provided reference genes

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