Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO334G0132 Selaginella moellendorffii HOM05D004315 ORTHO05D005089 8.9e-193 676.8 346 100.0
SEGI_10868 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 1.0e-103 380.9 340 58.5
Dinv05044 Davidia involucrata HOM05D004315 ORTHO05D005089 2.3e-100 369.8 338 56.2
Peaxi162Scf00351g00818 Petunia axillaris HOM05D004315 ORTHO05D005089 3.0e-100 369.4 334 56.9
CAN.G1316.2 Capsicum annuum HOM05D004315 ORTHO05D005089 4.0e-100 369.0 336 56.5
PSO675G7088 Papaver somniferum HOM05D004315 ORTHO05D005089 1.2e-99 367.5 332 55.7
Lsat_1_v5_gn_2_30700 Lactuca sativa HOM05D004315 ORTHO05D005089 4.4e-99 365.5 346 53.8
Sopen07g023340 Solanum pennellii HOM05D004315 ORTHO05D005089 4.4e-99 365.5 336 56.5
Ciclev10031991m.g Citrus clementina HOM05D004315 ORTHO05D005089 7.5e-99 364.8 330 55.2
Cc05_g00540 Coffea canephora HOM05D004315 ORTHO05D005089 7.5e-99 364.8 354 55.4
Duzib264G0097 Durio zibethinus HOM05D004315 ORTHO05D005089 9.8e-99 364.4 331 56.2
Nitab4.5_0001843g0170 Nicotiana tabacum HOM05D004315 ORTHO05D005089 9.8e-99 364.4 338 56.5
PGR031G0720 Punica granatum HOM05D004315 ORTHO05D005089 9.8e-99 364.4 333 55.9
Solyc07g044750.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 9.8e-99 364.4 336 56.5
MBI18_g11296_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 2.2e-98 363.2 333 54.1
GSVIVG01020802001 Vitis vinifera HOM05D004315 ORTHO05D005089 3.7e-98 362.5 335 56.7
LjContig00049g0028236 Lotus japonicus HOM05D004315 ORTHO05D005089 6.3e-98 361.7 334 55.4
Eucgr.A00888 Eucalyptus grandis HOM05D004315 ORTHO05D005089 8.3e-98 361.3 332 56.3
Aqoxy1G01576 Aquilegia oxysepala HOM05D004315 ORTHO05D005089 1.1e-97 360.9 332 55.7
ECA248G0068 Erigeron canadensis HOM05D004315 ORTHO05D005089 1.1e-97 360.9 333 55.6
Gohir.A05G380500 Gossypium hirsutum HOM05D004315 ORTHO05D005089 1.4e-97 360.5 334 55.4
CSS0039894 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 1.8e-97 360.1 331 55.0
Gorai.012G039600 Gossypium raimondii HOM05D004315 ORTHO05D005089 1.8e-97 360.1 334 55.4
Thecc.01G165100 Theobroma cacao HOM05D004315 ORTHO05D005089 1.8e-97 360.1 331 56.2
HanXRQChr01g0023901 Helianthus annuus HOM05D004315 ORTHO05D005089 2.4e-97 359.8 336 55.7
Lj2A329G54 Lonicera japonica HOM05D004315 ORTHO05D005089 5.4e-97 358.6 314 58.0
MD17G1131300 Malus domestica HOM05D004315 ORTHO05D005089 5.4e-97 358.6 333 56.2
PGSC0003DMG400021156 Solanum tuberosum HOM05D004315 ORTHO05D005089 5.4e-97 358.6 344 55.2
Mapoly0122s0046 Marchantia polymorpha HOM05D004315 ORTHO05D005089 7.0e-97 358.2 336 54.5
TWI59G1372 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 7.0e-97 358.2 331 55.6
TAR629G1010 Trochodendron aralioides HOM05D004315 ORTHO05D005089 7.0e-97 358.2 332 55.1
Potri.014G143500 Populus trichocarpa HOM05D004315 ORTHO05D005089 9.1e-97 357.8 330 55.8
ATR0165G021 Amborella trichopoda HOM05D004315 ORTHO05D005089 1.2e-96 357.5 314 57.0
arahy.Tifrunner.gnm1.ann1.8V1VF7 Arachis hypogaea HOM05D004315 ORTHO05D005089 1.2e-96 357.5 337 54.6
Cpa.g.sc1123.2 Carica papaya HOM05D004315 ORTHO05D005089 1.2e-96 357.5 351 52.4
CiPaw.03G190700 Carya illinoinensis HOM05D004315 ORTHO05D005089 1.2e-96 357.5 336 55.1
Hma1.2p1_0583F.1_g183050 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 1.6e-96 357.1 330 54.5
Potri.011G164500 Populus trichocarpa HOM05D004315 ORTHO05D005089 1.6e-96 357.1 321 57.0
DCAR_013332 Daucus carota HOM05D004315 ORTHO05D005089 2.0e-96 356.7 334 55.7
FvH4_6g39150 Fragaria vesca HOM05D004315 ORTHO05D005089 2.0e-96 356.7 333 54.7
FAN05G3231 Fragaria x ananassa HOM05D004315 ORTHO05D005089 2.0e-96 356.7 333 54.4
FAN14G1093 Fragaria x ananassa HOM05D004315 ORTHO05D005089 2.0e-96 356.7 333 54.7
Nitab4.5_0000076g0250 Nicotiana tabacum HOM05D004315 ORTHO05D005089 2.7e-96 356.3 315 58.4
Psat2g018080 Pisum sativum HOM05D004315 ORTHO05D005089 3.5e-96 355.9 334 54.8
MELO3C026388.2 Cucumis melo HOM05D004315 ORTHO05D005089 4.5e-96 355.5 331 54.7
Glyma.02G281300 Glycine max HOM05D004315 ORTHO05D005089 4.5e-96 355.5 334 54.8
MD09G1144800 Malus domestica HOM05D004315 ORTHO05D005089 4.5e-96 355.5 333 55.3
Prupe.3G183100 Prunus persica HOM05D004315 ORTHO05D005089 4.5e-96 355.5 333 55.3
Potri.001G466900 Populus trichocarpa HOM05D004315 ORTHO05D005089 5.9e-96 355.1 334 55.7
RcHm_v2.0_Chr2g0152961 Rosa chinensis HOM05D004315 ORTHO05D005089 1.0e-95 354.4 332 54.5
Sed0001791 Sechium edule HOM05D004315 ORTHO05D005089 1.0e-95 354.4 341 53.1
CANSAT64G0449 Cannabis sativa HOM05D004315 ORTHO05D005089 1.7e-95 353.6 332 55.7
HanXRQChr04g0115031 Helianthus annuus HOM05D004315 ORTHO05D005089 1.7e-95 353.6 334 53.6
MBI02_g32064_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 2.3e-95 353.2 317 56.8
Medtr5g090130 Medicago truncatula HOM05D004315 ORTHO05D005089 2.3e-95 353.2 337 54.6
Oeu015176.1 Olea europaea HOM05D004315 ORTHO05D005089 2.3e-95 353.2 336 54.5
CAN.G304.4 Capsicum annuum HOM05D004315 ORTHO05D005089 2.9e-95 352.8 319 56.7
TPR.G24734 Trifolium pratense HOM05D004315 ORTHO05D005089 2.9e-95 352.8 339 53.4
Nitab4.5_0006724g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 3.8e-95 352.4 326 56.1
Lalb_Chr10g0106401 Lupinus albus HOM05D004315 ORTHO05D005089 8.6e-95 351.3 331 53.8
TWI14G0586 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 1.1e-94 350.9 331 54.7
HanXRQChr14g0432981 Helianthus annuus HOM05D004315 ORTHO05D005089 1.9e-94 350.1 334 53.9
arahy.Tifrunner.gnm1.ann1.VQL6P1 Arachis hypogaea HOM05D004315 ORTHO05D005089 3.3e-94 349.4 344 53.2
Sabra14G0108500 Salix brachista HOM05D004315 ORTHO05D005089 3.3e-94 349.4 345 54.2
Solyc02g023980.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 3.3e-94 349.4 332 54.8
vmacro03380 Vaccinium macrocarpon HOM05D004315 ORTHO05D005089 4.2e-94 349.0 339 52.8
Cfa000809 Carpinus fangiana HOM05D004315 ORTHO05D005089 5.5e-94 348.6 329 55.0
PSO541G6471 Papaver somniferum HOM05D004315 ORTHO05D005089 7.2e-94 348.2 321 53.9
Cc09_g07890 Coffea canephora HOM05D004315 ORTHO05D005089 2.8e-93 346.3 315 56.5
Nn3g20219 Nelumbo nucifera HOM05D004315 ORTHO05D005089 2.8e-93 346.3 334 54.5
Oeu044867.2 Olea europaea HOM05D004315 ORTHO05D005089 3.6e-93 345.9 364 51.9
CDE05G3605 Ceratophyllum demersum HOM05D003391 ORTHO05D005563 6.1e-93 345.1 346 52.0
Zm00001eb299940 Zea mays HOM05D004315 ORTHO05D005089 6.1e-93 345.1 327 54.4
Oeu041105.1 Olea europaea HOM05D004315 ORTHO05D005089 8.0e-93 344.7 317 55.2
DCAR_007839 Daucus carota HOM05D004315 ORTHO05D005089 1.0e-92 344.4 314 54.1
GSVIVG01021661001 Vitis vinifera HOM05D004315 ORTHO05D005089 1.0e-92 344.4 348 52.6
CSS0023242 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 1.4e-92 344.0 352 51.1
Lsat_1_v5_gn_1_91760 Lactuca sativa HOM05D004315 ORTHO05D005089 1.8e-92 343.6 325 55.4
Sabra16G0316700 Salix brachista HOM05D004315 ORTHO05D005089 1.8e-92 343.6 367 51.5
VMungo0647G0619 Vigna mungo HOM05D004315 ORTHO05D005089 1.8e-92 343.6 334 53.3
COL.COLO4_29897 Corchorus olitorius HOM05D004315 ORTHO05D005089 2.3e-92 343.2 297 58.9
SalBow8G0183 Salvia bowleyana HOM05D004315 ORTHO05D005089 3.0e-92 342.8 317 55.2
MSTRG.16294 Avicennia marina HOM05D004315 ORTHO05D005089 5.2e-92 342.0 320 55.9
Migut.M01899 Erythranthe guttata HOM05D004315 ORTHO05D005089 5.2e-92 342.0 320 55.6
CiPaw.10G109400 Carya illinoinensis HOM05D004315 ORTHO05D005089 6.8e-92 341.7 323 54.2
Os07g0147700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 8.9e-92 341.3 327 54.7
Sp1g26410 Schrenkiella parvula HOM05D004315 ORTHO05D005089 1.2e-91 340.9 336 51.8
Migut.H01268 Erythranthe guttata HOM05D004315 ORTHO05D005089 2.6e-91 339.7 335 53.1
MELO3C016194.2 Cucumis melo HOM05D004315 ORTHO05D005089 3.4e-91 339.3 316 53.5
Nitab4.5_0011274g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 5.7e-91 338.6 304 56.9
Dinv10789 Davidia involucrata HOM05D004315 ORTHO05D005089 7.5e-91 338.2 321 54.2
Gohir.D04G035100 Gossypium hirsutum HOM05D004315 ORTHO05D005089 7.5e-91 338.2 320 54.1
CsaV3_4G007480 Cucumis sativus L. HOM05D004315 ORTHO05D005089 9.8e-91 337.8 324 53.4
Rhsim13G0121900 Rhododendron simsii HOM05D004315 ORTHO05D005089 9.8e-91 337.8 368 49.7
SHI10516 Sapria himalayana HOM05D004315 ORTHO05D005089 9.8e-91 337.8 315 53.7
Os09g0133700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 2.2e-90 336.7 315 56.8
Phvul.008G199600 Phaseolus vulgaris HOM05D004315 ORTHO05D005089 2.2e-90 336.7 334 52.4
Atru.chr10.841 Acer truncatum HOM05D004315 ORTHO05D005089 6.3e-90 335.1 326 53.7
CARHR029950 Cardamine hirsuta HOM05D004315 ORTHO05D005089 8.3e-90 334.7 322 52.5
ClCG11G016660 Citrullus lanatus HOM05D004315 ORTHO05D005089 8.3e-90 334.7 386 48.2
ClCG07G010830 Citrullus lanatus HOM05D004315 ORTHO05D005089 1.4e-89 334.0 316 52.8
Zm00001eb261810 Zea mays HOM05D004315 ORTHO05D005089 1.4e-89 334.0 323 55.7
Peaxi162Scf00395g00318 Petunia axillaris HOM05D004315 ORTHO05D005089 2.4e-89 333.2 315 54.9
CANSAT35G0713 Cannabis sativa HOM05D004315 ORTHO05D005089 4.1e-89 332.4 321 54.2
Lj1A584G30 Lonicera japonica HOM05D004315 ORTHO05D005089 4.1e-89 332.4 338 52.4
PGSC0003DMG401028079 Solanum tuberosum HOM05D004315 ORTHO05D005089 4.1e-89 332.4 308 55.2
AT1G30540 Arabidopsis thaliana HOM05D004315 ORTHO05D005089 9.2e-89 331.3 316 53.5
HPP92_005880 Vanilla planifolia HOM05D004315 ORTHO05D005089 9.2e-89 331.3 323 54.8
SGA_v2.0_scaffold223G42867 Striga asiatica HOM05D004315 ORTHO05D005089 1.2e-88 330.9 344 52.3
AL1G44580 Arabidopsis lyrata HOM05D004315 ORTHO05D005089 2.0e-88 330.1 322 52.2
Carub.0001s2880 Capsella rubella HOM05D004315 ORTHO05D005089 2.0e-88 330.1 322 52.2
BcaB07g32690 Brassica carinata HOM05D004315 ORTHO05D005089 1.3e-87 327.4 323 52.6
unitig_37.g12072 Utricularia gibba HOM05D004315 ORTHO05D005089 2.9e-87 326.2 324 54.3
Aa31LG10G6590 Aethionema arabicum HOM05D004315 ORTHO05D005089 3.8e-87 325.9 321 52.3
A09p35900 Brassica napus HOM05D004315 ORTHO05D005089 3.8e-87 325.9 324 52.2
Sabra11G0140700 Salix brachista HOM05D004315 ORTHO05D005089 5.0e-87 325.5 358 50.6
BcaC05g27075 Brassica carinata HOM05D004315 ORTHO05D005089 6.6e-87 325.1 322 51.9
Thhalv10008046m.g Eutrema salsugineum HOM05D004315 ORTHO05D005089 6.6e-87 325.1 331 50.5
BraA09t39115Z Brassica rapa HOM05D004315 ORTHO05D005089 8.6e-87 324.7 324 52.2
C05p29560 Brassica napus HOM05D004315 ORTHO05D005089 1.6e-85 320.5 323 51.7
BolC5t31687H Brassica oleracea HOM05D004315 ORTHO05D005089 1.6e-85 320.5 323 51.7
Actinidia12522 Actinidia chinensis HOM05D004315 ORTHO05D005089 1.8e-84 317.0 332 51.5
THA.LOC104798598 Tarenaya hassleriana HOM05D004315 ORTHO05D005089 3.0e-84 316.2 355 48.5
Ah.09g232250 Amaranthus hybridus HOM05D004315 ORTHO05D005089 4.0e-84 315.8 327 51.4
Manes.02G090600 Manihot esculenta HOM05D004315 ORTHO05D005089 2.9e-82 309.7 269 57.6
Pp3c17_6390 Physcomitrium patens HOM05D004315 ORTHO05D005089 4.1e-81 305.8 283 55.8
BcaB07g32692 Brassica carinata HOM05D004315 ORTHO05D005089 1.7e-79 300.4 327 50.5
Sed0020733 Sechium edule HOM05D004315 ORTHO05D005089 1.6e-77 293.9 276 56.2
Duzib147G0966 Durio zibethinus HOM05D004315 ORTHO05D005089 8.0e-77 291.6 331 47.4
Atru.chr6.2011 Acer truncatum HOM05D004315 ORTHO05D005089 1.4e-76 290.8 265 56.2
CsaV3_4G032170 Cucumis sativus L. HOM05D004315 ORTHO05D005089 1.4e-76 290.8 331 47.4
Glyma.14G033300 Glycine max HOM05D004315 ORTHO05D005089 2.6e-75 286.6 258 56.6
CBR_g20100 Chara braunii HOM05D004315 ORTHO05D005089 1.6e-69 267.3 374 41.4
BcaB07g32666 Brassica carinata HOM05D004315 ORTHO05D005089 4.0e-68 262.7 327 46.8
Lsat_1_v5_gn_1_77721 Lactuca sativa HOM05D004315 ORTHO05D005089 5.2e-68 262.3 219 60.3
QL05p061983 Quercus lobata HOM05D004315 ORTHO05D005089 9.9e-67 258.1 516 33.1
Haze_05864 Corylus avellana HOM05D004315 ORTHO05D005089 8.9e-60 235.0 285 46.7
Sopen02g006690 Solanum pennellii HOM05D004315 ORTHO05D005089 2.0e-59 233.8 209 57.4
Sc10g0005420 Simmondsia chinensis HOM05D004315 ORTHO05D005089 9.9e-59 231.5 230 52.6
Manes.14G123700 Manihot esculenta HOM05D004315 ORTHO05D005089 6.4e-58 228.8 238 50.4
Actinidia01578 Actinidia chinensis HOM05D004315 ORTHO05D005089 1.1e-57 228.0 218 51.4
Hma1.2p1_0067F.1_g036960 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 1.6e-56 224.2 189 57.1
Haze_05859 Corylus avellana HOM05D004315 ORTHO05D005089 1.1e-54 218.0 284 44.0
AagrBONN_evm.TU.Sc2ySwM_117.2193 Anthoceros agrestis HOM05D004315 ORTHO05D005089 9.6e-54 214.9 267 46.8
Haze_13622 Corylus avellana HOM05D004315 ORTHO05D005089 2.7e-48 196.8 162 59.3
PRCOL_00003495 Prasinoderma coloniale HOM05D004315 ORTHO05D005089 2.8e-45 186.8 341 38.7
Cfa023542 Carpinus fangiana HOM05D004315 ORTHO05D005089 7.6e-43 178.7 181 50.8
Zm00001eb058170 Zea mays HOM05D004315 ORTHO05D005089 3.8e-42 176.4 173 53.2
Hund21564 Selenicereus undatus HOM05D004315 ORTHO05D005089 3.2e-41 173.3 174 51.7
Hund21563 Selenicereus undatus HOM05D004315 ORTHO05D005089 2.5e-38 163.7 154 54.5
QL05p062039 Quercus lobata HOM05D004315 ORTHO05D005089 4.0e-36 156.4 144 54.2
Actinidia33709 Actinidia chinensis HOM05D004315 ORTHO05D005089 9.9e-35 151.8 167 50.3
Cre17.g720528 Chlamydomonas reinhardtii HOM05D004315 ORTHO05D005089 2.2e-34 150.6 327 34.3
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 8.7e-31 138.7 286 35.0
MCO07G054 Micromonas commoda HOM05D004315 ORTHO05D005089 9.0e-28 128.6 377 32.4
TPR.G1178 Trifolium pratense HOM05D003586 ORTHO05D004036 2.6e-27 127.1 152 46.1
Manes.01G131701 Manihot esculenta HOM05D004315 ORTHO05D005089 1.7e-26 124.4 136 48.5
Manes.01G131702 Manihot esculenta HOM05D004315 ORTHO05D005089 8.7e-23 112.1 105 55.2
QL04p059944 Quercus lobata HOM05D004315 ORTHO05D005089 1.4e-17 94.7 71 63.4
SEGI_40766 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 2.5e-17 94.0 113 44.2
SEGI_21833 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 1.3e-13 81.6 127 37.8
Hma1.2p1_0067F.1_g036930 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 9.1e-12 75.5 55 60.0
TAR624G0620 Trochodendron aralioides HOM05D004315 ORTHO05D005089 2.5e-09 67.4 75 46.7
Cfa023541 Carpinus fangiana HOM05D004315 ORTHO05D005089 3.6e-08 63.5 61 54.1
Atru.chr6.2012 Acer truncatum HOM05D004315 ORTHO05D005089 3.0e-07 60.5 59 50.8


User provided reference genes

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