Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO331G0088 Selaginella moellendorffii HOM05D004753 ORTHO05D005920 1.6e-178 629.4 345 100.0
Pp3c2_30030 Physcomitrium patens HOM05D004753 ORTHO05D005920 3.0e-116 422.5 274 74.1
Mapoly0097s0041 Marchantia polymorpha HOM05D004753 ORTHO05D005920 2.4e-113 412.9 273 71.8
AagrBONN_evm.TU.Sc2ySwM_362.2675 Anthoceros agrestis HOM05D004753 ORTHO05D005920 3.8e-111 405.6 275 71.3
Manes.01G218800 Manihot esculenta HOM05D004753 ORTHO05D005920 5.2e-108 395.2 284 65.5
Ciclev10023300m.g Citrus clementina HOM05D004753 ORTHO05D005920 2.6e-107 392.9 284 66.2
ClCG10G010920 Citrullus lanatus HOM05D004753 ORTHO05D005920 5.7e-107 391.7 283 65.0
CiPaw.14G100000 Carya illinoinensis HOM05D004753 ORTHO05D005920 7.4e-107 391.3 284 66.5
Eucgr.K03479 Eucalyptus grandis HOM05D004753 ORTHO05D005920 9.7e-107 391.0 278 67.3
QL12p028506 Quercus lobata HOM05D004753 ORTHO05D005920 1.7e-106 390.2 284 65.8
THA.LOC104818291 Tarenaya hassleriana HOM05D004753 ORTHO05D005920 2.2e-106 389.8 284 65.5
Atru.chr5.901 Acer truncatum HOM05D004753 ORTHO05D005920 2.8e-106 389.4 285 66.0
QL09p032163 Quercus lobata HOM05D004753 ORTHO05D005920 3.7e-106 389.0 284 65.5
Nn3g21484 Nelumbo nucifera HOM05D004753 ORTHO05D005920 4.8e-106 388.7 280 66.4
MELO3C017956.2 Cucumis melo HOM05D004753 ORTHO05D005920 6.3e-106 388.3 283 64.3
Cc09_g07750 Coffea canephora HOM05D004753 ORTHO05D005920 1.1e-105 387.5 284 65.8
Sabra02G0154600 Salix brachista HOM05D004753 ORTHO05D005920 1.4e-105 387.1 284 64.8
GSVIVG01028012001 Vitis vinifera HOM05D004753 ORTHO05D005920 1.4e-105 387.1 284 64.4
CsaV3_4G000800 Cucumis sativus L. HOM05D004753 ORTHO05D005920 1.8e-105 386.7 283 64.0
MBI18_g06877_MAGBIO Magnolia biondii HOM05D004753 ORTHO05D005920 1.8e-105 386.7 278 66.5
Potri.002G204900 Populus trichocarpa HOM05D004753 ORTHO05D005920 2.4e-105 386.3 284 65.1
Cpa.g.sc16.169 Carica papaya HOM05D004753 ORTHO05D005920 3.1e-105 386.0 286 65.4
Haze_24929 Corylus avellana HOM05D004753 ORTHO05D005920 4.1e-105 385.6 284 64.8
MSTRG.18152 Avicennia marina HOM05D004753 ORTHO05D005920 5.3e-105 385.2 278 66.5
PGR044G2668 Punica granatum HOM05D004753 ORTHO05D005920 9.1e-105 384.4 284 65.5
Aqoxy2G02947 Aquilegia oxysepala HOM05D004753 ORTHO05D005920 1.2e-104 384.0 284 63.7
SalBow3G1002 Salvia bowleyana HOM05D004753 ORTHO05D005920 1.2e-104 384.0 278 64.7
SGA_v2.0_scaffold2G01394 Striga asiatica HOM05D004753 ORTHO05D005920 1.2e-104 384.0 278 65.8
Sabra14G0096300 Salix brachista HOM05D004753 ORTHO05D005920 1.6e-104 383.6 284 64.4
Haze_04935 Corylus avellana HOM05D004753 ORTHO05D005920 2.6e-104 382.9 284 64.4
Sed0000474 Sechium edule HOM05D004753 ORTHO05D005920 2.6e-104 382.9 281 64.8
Potri.014G129700 Populus trichocarpa HOM05D004753 ORTHO05D005920 3.5e-104 382.5 278 65.8
TWI59G0801 Tripterygium wilfordii HOM05D004753 ORTHO05D005920 4.5e-104 382.1 279 64.9
vmacro15009 Vaccinium macrocarpon HOM05D004753 ORTHO05D005920 5.9e-104 381.7 276 65.9
ATR0584G246 Amborella trichopoda HOM05D004753 ORTHO05D005920 7.7e-104 381.3 277 65.0
Lsat_1_v5_gn_4_87281 Lactuca sativa HOM05D004753 ORTHO05D005920 7.7e-104 381.3 284 64.1
Peaxi162Scf01084g00120 Petunia axillaris HOM05D004753 ORTHO05D005920 1.3e-103 380.6 278 65.5
MD11G1310300 Malus domestica HOM05D004753 ORTHO05D005920 2.9e-103 379.4 284 64.4
CANSAT54G1658 Cannabis sativa HOM05D004753 ORTHO05D005920 3.8e-103 379.0 284 63.4
Oeu046682.2 Olea europaea HOM05D004753 ORTHO05D005920 3.8e-103 379.0 284 64.8
MD03G1288000 Malus domestica HOM05D004753 ORTHO05D005920 8.5e-103 377.9 284 64.1
CSS0011058 Camellia sinensis var. sinensis HOM05D004753 ORTHO05D005920 1.5e-102 377.1 279 64.2
COL.COLO4_23348 Corchorus olitorius HOM05D004753 ORTHO05D005920 1.5e-102 377.1 276 65.6
Sp2g24970 Schrenkiella parvula HOM05D004753 ORTHO05D005920 1.5e-102 377.1 284 63.7
TAR636G3371 Trochodendron aralioides HOM05D004753 ORTHO05D005920 1.5e-102 377.1 277 65.0
DCAR_012396 Daucus carota HOM05D004753 ORTHO05D005920 1.9e-102 376.7 284 63.4
Nitab4.5_0002687g0080 Nicotiana tabacum HOM05D004753 ORTHO05D005920 2.5e-102 376.3 284 64.1
Nitab4.5_0008999g0010 Nicotiana tabacum HOM05D004753 ORTHO05D005920 2.5e-102 376.3 279 64.9
Duzib138G1754 Durio zibethinus HOM05D004753 ORTHO05D005920 3.2e-102 375.9 284 63.7
Lj3g0027269 Lotus japonicus HOM05D004753 ORTHO05D005920 4.2e-102 375.6 281 64.4
Oeu011458.1 Olea europaea HOM05D004753 ORTHO05D005920 9.4e-102 374.4 278 64.7
PGSC0003DMG401027528 Solanum tuberosum HOM05D004753 ORTHO05D005920 9.4e-102 374.4 284 63.4
Thecc.01G300100 Theobroma cacao HOM05D004753 ORTHO05D005920 1.2e-101 374.0 282 64.5
Gohir.D08G138800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 1.6e-101 373.6 284 63.7
CARHR275530 Cardamine hirsuta HOM05D004753 ORTHO05D005920 3.6e-101 372.5 284 62.7
Carub.0008s2246 Capsella rubella HOM05D004753 ORTHO05D005920 4.7e-101 372.1 285 62.5
AL8G38530 Arabidopsis lyrata HOM05D004753 ORTHO05D005920 6.1e-101 371.7 285 62.5
Duzib133G0229 Durio zibethinus HOM05D004753 ORTHO05D005920 6.1e-101 371.7 284 63.4
Phvul.011G029700 Phaseolus vulgaris HOM05D004753 ORTHO05D005920 6.1e-101 371.7 276 64.5
SGA_v2.0_scaffold1G00368 Striga asiatica HOM05D004753 ORTHO05D005920 8.0e-101 371.3 303 60.7
A09p07440 Brassica napus HOM05D004753 ORTHO05D005920 1.0e-100 370.9 276 63.4
BraA09t36398Z Brassica rapa HOM05D004753 ORTHO05D005920 1.0e-100 370.9 276 63.4
Gohir.A08G117800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 1.4e-100 370.5 277 63.9
Gorai.004G142400 Gossypium raimondii HOM05D004753 ORTHO05D005920 1.4e-100 370.5 284 63.4
BcaC04g23436 Brassica carinata HOM05D004753 ORTHO05D005920 1.8e-100 370.2 276 63.4
C09p08350 Brassica napus HOM05D004753 ORTHO05D005920 1.8e-100 370.2 276 63.4
BolC9t53745H Brassica oleracea HOM05D004753 ORTHO05D005920 1.8e-100 370.2 276 63.4
Thhalv10004503m.g Eutrema salsugineum HOM05D004753 ORTHO05D005920 3.0e-100 369.4 277 63.9
Lj2A1194G52 Lonicera japonica HOM05D004753 ORTHO05D005920 3.0e-100 369.4 274 63.9
Glyma.11G100700 Glycine max HOM05D004753 ORTHO05D005920 6.7e-100 368.2 276 64.5
Sopen01g040500 Solanum pennellii HOM05D004753 ORTHO05D005920 6.7e-100 368.2 284 62.7
VMungo1127G1640 Vigna mungo HOM05D004753 ORTHO05D005920 6.7e-100 368.2 276 63.4
Aa31LG11G1720 Aethionema arabicum HOM05D004753 ORTHO05D005920 8.8e-100 367.9 284 60.9
Solyc01g096800.3 Solanum lycopersicum HOM05D004753 ORTHO05D005920 8.8e-100 367.9 284 62.7
Actinidia15830 Actinidia chinensis HOM05D004753 ORTHO05D005920 1.2e-99 367.5 289 63.7
AT5G61770 Arabidopsis thaliana HOM05D004753 ORTHO05D005920 1.2e-99 367.5 285 61.8
BcaC01g02428 Brassica carinata HOM05D004753 ORTHO05D005920 1.5e-99 367.1 283 61.8
A06p28420 Brassica napus HOM05D004753 ORTHO05D005920 1.5e-99 367.1 283 61.8
C03p65390 Brassica napus HOM05D004753 ORTHO05D005920 1.5e-99 367.1 283 61.8
BolC3t18792H Brassica oleracea HOM05D004753 ORTHO05D005920 1.5e-99 367.1 283 61.8
BraA06t25786Z Brassica rapa HOM05D004753 ORTHO05D005920 1.5e-99 367.1 283 61.8
Glyma.12G026700 Glycine max HOM05D004753 ORTHO05D005920 1.5e-99 367.1 276 64.5
HanXRQChr08g0207921 Helianthus annuus HOM05D004753 ORTHO05D005920 1.5e-99 367.1 280 62.1
BcaB02g09600 Brassica carinata HOM05D004753 ORTHO05D005920 2.6e-99 366.3 285 61.8
CAN.G134.43 Capsicum annuum HOM05D004753 ORTHO05D005920 3.3e-99 365.9 284 62.7
TPR.G32348 Trifolium pratense HOM05D004753 ORTHO05D005920 3.3e-99 365.9 275 64.0
ECA238G0492 Erigeron canadensis HOM05D004753 ORTHO05D005920 5.7e-99 365.2 284 61.3
Rhsim01G0243400 Rhododendron simsii HOM05D004753 ORTHO05D005920 5.7e-99 365.2 322 57.5
Hund05425 Selenicereus undatus HOM05D004753 ORTHO05D005920 5.7e-99 365.2 282 63.1
Lalb_Chr01g0001441 Lupinus albus HOM05D004753 ORTHO05D005920 7.5e-99 364.8 281 63.0
Ca_19020_v3 Cicer arietinum L. HOM05D004753 ORTHO05D005920 9.7e-99 364.4 275 63.3
HPP92_002997 Vanilla planifolia HOM05D004753 ORTHO05D005920 9.7e-99 364.4 284 61.3
arahy.Tifrunner.gnm1.ann1.89EUFG Arachis hypogaea HOM05D004753 ORTHO05D005920 2.2e-98 363.2 276 64.9
AUR62008626 Chenopodium quinoa HOM05D004753 ORTHO05D005920 2.2e-98 363.2 274 63.1
Sc17g0002740 Simmondsia chinensis HOM05D004753 ORTHO05D005920 8.2e-98 361.3 282 61.0
arahy.Tifrunner.gnm1.ann1.B7L3V1 Arachis hypogaea HOM05D004753 ORTHO05D005920 1.1e-97 360.9 276 64.5
PSO832G3876 Papaver somniferum HOM05D004753 ORTHO05D005920 1.4e-97 360.5 284 61.6
PSO017G3074 Papaver somniferum HOM05D004753 ORTHO05D005920 1.2e-96 357.5 284 60.6
PSO170G0569 Papaver somniferum HOM05D004753 ORTHO05D005920 1.6e-96 357.1 284 60.6
PSO210G3006 Papaver somniferum HOM05D004753 ORTHO05D005920 2.0e-96 356.7 284 60.9
BcaNung01420 Brassica carinata HOM05D004753 ORTHO05D005920 6.5e-95 351.7 286 59.1
FvH4_2g25700 Fragaria vesca HOM05D004753 ORTHO05D005920 2.1e-93 346.7 284 59.5
FAN24G0086 Fragaria x ananassa HOM05D004753 ORTHO05D005920 2.7e-93 346.3 284 59.5
RcHm_v2.0_Chr6g0293981 Rosa chinensis HOM05D004753 ORTHO05D005920 2.7e-93 346.3 292 58.2
unitig_26.g10170 Utricularia gibba HOM05D004753 ORTHO05D005920 1.4e-92 344.0 251 66.5
Dinv37873 Davidia involucrata HOM05D004753 ORTHO05D005920 8.8e-92 341.3 252 64.3
FAN15G2487 Fragaria x ananassa HOM05D004753 ORTHO05D005920 5.7e-91 338.6 289 58.1
FAN27G0535 Fragaria x ananassa HOM05D004753 ORTHO05D005920 7.5e-91 338.2 289 57.8
FAN20G2170 Fragaria x ananassa HOM05D004753 ORTHO05D005920 1.3e-90 337.4 289 57.8
HanXRQChr12g0368811 Helianthus annuus HOM05D004753 ORTHO05D005920 3.7e-90 335.9 274 59.5
Zm00001eb016460 Zea mays HOM05D004753 ORTHO05D005920 1.3e-87 327.4 272 58.5
CBR_g227 Chara braunii HOM05D004753 ORTHO05D005920 1.7e-87 327.0 246 65.4
AUR62033145 Chenopodium quinoa HOM05D004753 ORTHO05D005920 1.1e-86 324.3 274 58.8
Os03g0343700 Oryza sativa ssp. japonica HOM05D004753 ORTHO05D005920 1.1e-86 324.3 272 56.6
Cre10.g450879 Chlamydomonas reinhardtii HOM05D004753 ORTHO05D005920 3.0e-84 316.2 271 57.6
Ah.08g213470 Amaranthus hybridus HOM05D004753 ORTHO05D005920 4.0e-84 315.8 280 57.5
Ah.15g093220 Amaranthus hybridus HOM05D004753 ORTHO05D005920 2.2e-82 310.1 280 56.4
CDE09G1083 Ceratophyllum demersum HOM05D004753 ORTHO05D005920 1.3e-79 300.8 251 58.6
Medtr4g075050 Medicago truncatula HOM05D004753 ORTHO05D005920 1.9e-78 297.0 275 55.6
MCO08G191 Micromonas commoda HOM05D004753 ORTHO05D005920 3.3e-78 296.2 278 54.7
Gorai.002G117300 Gossypium raimondii HOM05D004753 ORTHO05D005920 1.5e-75 287.3 284 53.5
Psat7g177400 Pisum sativum HOM05D004753 ORTHO05D005920 1.3e-74 284.3 218 62.8
Aqoxy311s002 Aquilegia oxysepala HOM05D004753 ORTHO05D005920 1.7e-74 283.9 219 62.6
TAR365G0243 Trochodendron aralioides HOM05D004753 ORTHO05D005920 2.4e-73 280.0 206 62.1
Prupe.8G261200 Prunus persica HOM05D004753 ORTHO05D005920 2.7e-72 276.6 206 63.1
Actinidia01484 Actinidia chinensis HOM05D004753 ORTHO05D005920 8.0e-69 265.0 251 53.8
Actinidia32213 Actinidia chinensis HOM05D004753 ORTHO05D005920 2.1e-53 213.8 217 50.7
THA.LOC104801723 Tarenaya hassleriana HOM05D004753 ORTHO05D005920 2.8e-53 213.4 149 65.1
PRCOL_00006477 Prasinoderma coloniale HOM05D004753 ORTHO05D005920 1.8e-52 210.7 226 46.5
Gorai.012G092400 Gossypium raimondii HOM05D004753 ORTHO05D005920 1.2e-51 208.0 165 64.8
Sed0023746 Sechium edule HOM05D004753 ORTHO05D005920 2.1e-48 197.2 230 46.1
Cfa026076 Carpinus fangiana HOM05D004753 ORTHO05D005920 3.9e-39 166.4 368 33.4
Haze_27315 Corylus avellana HOM05D004753 ORTHO05D005920 1.1e-38 164.9 295 36.6
AUR62033152 Chenopodium quinoa HOM05D004753 ORTHO05D005920 2.1e-37 160.6 160 53.1
Migut.B01152 Erythranthe guttata HOM05D004753 ORTHO05D005920 4.2e-33 146.4 115 60.9
Gohir.D04G081932 Gossypium hirsutum HOM05D004753 ORTHO05D005920 9.3e-25 118.6 94 59.6
Gohir.D02G011800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 2.7e-24 117.1 94 58.5
Gorai.005G015000 Gossypium raimondii HOM05D004753 ORTHO05D005920 2.7e-24 117.1 94 58.5
Gohir.D11G077800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 4.6e-24 116.3 194 36.1
arahy.Tifrunner.gnm1.ann1.81M7HI Arachis hypogaea HOM05D004753 ORTHO05D005920 1.9e-22 110.9 95 63.2
arahy.Tifrunner.gnm1.ann1.JRXS1U Arachis hypogaea HOM05D004753 ORTHO05D005920 1.9e-22 110.9 95 63.2
Actinidia16175 Actinidia chinensis HOM05D004753 ORTHO05D005920 7.4e-22 109.0 73 64.4
MD08G1232400 Malus domestica HOM05D004753 ORTHO05D005920 1.3e-21 108.2 87 57.5
Gorai.007G256100 Gossypium raimondii HOM05D004753 ORTHO05D005920 5.7e-14 82.8 71 59.2
PGSC0003DMG400004411 Solanum tuberosum HOM05D004753 ORTHO05D005920 1.5e-11 74.7 53 62.3
Hma1.2p1_1471F.1_g285675 Hydrangea macrophylla HOM05D004753 ORTHO05D005920 2.5e-09 67.4 48 64.6
Hma1.2p1_1471F.1_g285690 Hydrangea macrophylla HOM05D004753 ORTHO05D005920 2.5e-09 67.4 48 64.6
TAR629G0138 Trochodendron aralioides HOM05D004753 ORTHO05D005920 2.7e-08 63.9 42 71.4
CANSAT21G1846 Cannabis sativa HOM05D000521 ORTHO05D000384 1.4e-07 61.6 46 65.2
Migut.D00217 Erythranthe guttata HOM05D004753 ORTHO05D005920 2.3e-07 60.8 46 60.9
TAR624G1091 Trochodendron aralioides HOM05D004877 ORTHO05D005942 1.1e-06 58.5 42 66.7


User provided reference genes

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