Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO331G0035 Selaginella moellendorffii HOM05D003747 ORTHO05D005080 0.0e+00 1397.5 810 100.0
SMO118G0420 Selaginella moellendorffii HOM05D003747 ORTHO05D005080 1.4e-188 664.1 843 53.5
SEGI_05010 Sequoiadendron giganteum HOM05D003747 ORTHO05D005080 1.1e-180 637.9 857 51.2
Eucgr.F01620 Eucalyptus grandis HOM05D003747 ORTHO05D005080 8.2e-165 585.1 823 53.9
Manes.05G152300 Manihot esculenta HOM05D003747 ORTHO05D005080 1.1e-164 584.7 821 53.7
Sabra02G0022000 Salix brachista HOM05D003747 ORTHO05D005080 1.1e-164 584.7 815 54.1
Sabra05G0181100 Salix brachista HOM05D003747 ORTHO05D005080 4.1e-164 582.8 816 54.2
Atru.chr13.357 Acer truncatum HOM05D003747 ORTHO05D005080 5.3e-164 582.4 823 54.1
ClCG05G018570 Citrullus lanatus HOM05D003747 ORTHO05D005080 7.0e-164 582.0 821 53.7
Haze_22585 Corylus avellana HOM05D003747 ORTHO05D005080 1.2e-163 581.3 819 53.7
RcHm_v2.0_Chr6g0302151 Rosa chinensis HOM05D003747 ORTHO05D005080 1.2e-163 581.3 827 53.1
FvH4_2g39050 Fragaria vesca HOM05D003747 ORTHO05D005080 1.6e-163 580.9 825 52.6
FAN27G0346 Fragaria x ananassa HOM05D003747 ORTHO05D005080 1.6e-163 580.9 825 52.8
Potri.005G234900 Populus trichocarpa HOM05D003747 ORTHO05D005080 1.6e-163 580.9 816 53.7
MD15G1017300 Malus domestica HOM05D003747 ORTHO05D005080 4.5e-163 579.3 820 54.1
Ciclev10000324m.g Citrus clementina HOM05D003747 ORTHO05D005080 7.7e-163 578.6 824 53.9
Rhsim06G0026300 Rhododendron simsii HOM05D003747 ORTHO05D005080 7.7e-163 578.6 822 49.6
Manes.18G017800 Manihot esculenta HOM05D003747 ORTHO05D005080 1.0e-162 578.2 821 53.5
Thecc.08G037800 Theobroma cacao HOM05D003747 ORTHO05D005080 1.0e-162 578.2 824 53.4
TAR376G0166 Trochodendron aralioides HOM05D003747 ORTHO05D005080 1.0e-162 578.2 821 49.7
Cfa013905 Carpinus fangiana HOM05D003747 ORTHO05D005080 1.3e-162 577.8 819 53.6
Dinv39487 Davidia involucrata HOM05D003747 ORTHO05D005080 2.2e-162 577.0 820 49.0
Potri.002G027900 Populus trichocarpa HOM05D003747 ORTHO05D005080 2.2e-162 577.0 816 53.6
FAN20G0205 Fragaria x ananassa HOM05D003747 ORTHO05D005080 2.9e-162 576.6 825 52.7
MD08G1018000 Malus domestica HOM05D003747 ORTHO05D005080 3.8e-162 576.2 820 53.7
Prupe.1G370600 Prunus persica HOM05D003747 ORTHO05D005080 3.8e-162 576.2 820 53.4
Aqoxy6G02380 Aquilegia oxysepala HOM05D003747 ORTHO05D005080 5.0e-162 575.9 830 52.7
FAN15G1267 Fragaria x ananassa HOM05D003747 ORTHO05D005080 5.0e-162 575.9 825 52.8
Lj6g0007889 Lotus japonicus HOM05D003747 ORTHO05D005080 8.5e-162 575.1 831 52.5
MELO3C024651.2 Cucumis melo HOM05D003747 ORTHO05D005080 1.5e-161 574.3 821 53.3
Gorai.009G196800 Gossypium raimondii HOM05D003747 ORTHO05D005080 2.5e-161 573.5 821 53.7
COL.COLO4_26196 Corchorus olitorius HOM05D003747 ORTHO05D005080 3.2e-161 573.2 824 53.2
Gohir.D05G191500 Gossypium hirsutum HOM05D003747 ORTHO05D005080 4.2e-161 572.8 821 53.7
CANSAT25G1149 Cannabis sativa HOM05D003747 ORTHO05D005080 5.5e-161 572.4 821 52.9
Gohir.A05G188400 Gossypium hirsutum HOM05D003747 ORTHO05D005080 1.6e-160 570.9 821 53.7
Oeu047748.1 Olea europaea HOM05D003747 ORTHO05D005080 1.6e-160 570.9 824 49.2
THA.LOC104806907 Tarenaya hassleriana HOM05D003747 ORTHO05D005080 3.6e-160 569.7 823 52.4
Gorai.002G125100 Gossypium raimondii HOM05D003747 ORTHO05D005080 4.7e-160 569.3 821 53.0
Sp1g04000 Schrenkiella parvula HOM05D003747 ORTHO05D005080 6.1e-160 568.9 832 52.4
SpUn0024_0140 Schrenkiella parvula HOM05D003747 ORTHO05D005080 6.1e-160 568.9 832 52.4
Aa31LG1G19600 Aethionema arabicum HOM05D003747 ORTHO05D005080 1.0e-159 568.2 823 52.0
Thhalv10017699m.g Eutrema salsugineum HOM05D003747 ORTHO05D005080 1.0e-159 568.2 823 52.2
TWI56G0727 Tripterygium wilfordii HOM05D003747 ORTHO05D005080 1.0e-159 568.2 819 53.2
Hma1.2p1_1386F.1_g279810 Hydrangea macrophylla HOM05D003747 ORTHO05D005080 1.4e-159 567.8 820 50.2
arahy.Tifrunner.gnm1.ann1.K8KKRC Arachis hypogaea HOM05D003747 ORTHO05D005080 1.8e-159 567.4 824 52.8
arahy.Tifrunner.gnm1.ann1.VC055M Arachis hypogaea HOM05D003747 ORTHO05D005080 1.8e-159 567.4 824 52.8
PSO541G0570 Papaver somniferum HOM05D003747 ORTHO05D005080 1.8e-159 567.4 829 48.9
MBI05_g04846_MAGBIO Magnolia biondii HOM05D003747 ORTHO05D005080 2.3e-159 567.0 818 49.1
Medtr1g045490 Medicago truncatula HOM05D003747 ORTHO05D005080 3.0e-159 566.6 822 52.6
C05p03390 Brassica napus HOM05D003747 ORTHO05D005080 5.2e-159 565.8 833 52.2
CARHR004600 Cardamine hirsuta HOM05D003747 ORTHO05D005080 5.2e-159 565.8 837 52.3
Ca_11895_v3 Cicer arietinum L. HOM05D003747 ORTHO05D005080 5.2e-159 565.8 823 52.4
Ca_30287_v3 Cicer arietinum L. HOM05D003747 ORTHO05D005080 5.2e-159 565.8 823 52.4
MSTRG.24265 Avicennia marina HOM05D003747 ORTHO05D005080 8.8e-159 565.1 827 52.0
CSS0029452 Camellia sinensis var. sinensis HOM05D003747 ORTHO05D005080 8.8e-159 565.1 806 47.4
Nitab4.5_0000352g0010 Nicotiana tabacum HOM05D003747 ORTHO05D005080 1.2e-158 564.7 825 52.1
Glyma.20G084100 Glycine max HOM05D003747 ORTHO05D005080 1.5e-158 564.3 824 52.7
Lj4C29T2 Lonicera japonica HOM05D003747 ORTHO05D005080 1.5e-158 564.3 821 52.1
CiPaw.08G062900 Carya illinoinensis HOM05D003747 ORTHO05D005080 2.6e-158 563.5 829 52.8
Sp4g14820 Schrenkiella parvula HOM05D003747 ORTHO05D005080 4.4e-158 562.8 823 51.9
A10p03680 Brassica napus HOM05D003747 ORTHO05D005080 5.7e-158 562.4 830 52.2
BolC5t29116H Brassica oleracea HOM05D003747 ORTHO05D005080 5.7e-158 562.4 825 52.6
BraA10t42641Z Brassica rapa HOM05D003747 ORTHO05D005080 5.7e-158 562.4 830 52.2
Gohir.D01G100800 Gossypium hirsutum HOM05D003747 ORTHO05D005080 5.7e-158 562.4 821 52.7
Nitab4.5_0012730g0020 Nicotiana tabacum HOM05D003747 ORTHO05D005080 5.7e-158 562.4 827 52.0
PSO675G4036 Papaver somniferum HOM05D003747 ORTHO05D005080 5.7e-158 562.4 833 48.5
QL02p010745 Quercus lobata HOM05D003747 ORTHO05D005080 5.7e-158 562.4 820 52.6
AL1G14910 Arabidopsis lyrata HOM05D003747 ORTHO05D005080 7.5e-158 562.0 836 52.2
Duzib041G0542 Durio zibethinus HOM05D003747 ORTHO05D005080 7.5e-158 562.0 824 52.5
Lalb_Chr19g0128511 Lupinus albus HOM05D003747 ORTHO05D005080 7.5e-158 562.0 820 53.2
Nitab4.5_0004368g0010 Nicotiana tabacum HOM05D003747 ORTHO05D005080 7.5e-158 562.0 828 52.2
Carub.0001s0442 Capsella rubella HOM05D003747 ORTHO05D005080 9.8e-158 561.6 833 51.9
Lalb_Chr03g0036971 Lupinus albus HOM05D003747 ORTHO05D005080 9.8e-158 561.6 821 52.9
Peaxi162Scf00640g00034 Petunia axillaris HOM05D003747 ORTHO05D005080 9.8e-158 561.6 825 52.0
Glyma.10G132800 Glycine max HOM05D003747 ORTHO05D005080 1.3e-157 561.2 824 52.5
Peaxi162Scf00287g00127 Petunia axillaris HOM05D003747 ORTHO05D005080 1.3e-157 561.2 824 51.8
PGR083G0723 Punica granatum HOM05D003747 ORTHO05D005080 1.3e-157 561.2 832 52.5
Sed0022188 Sechium edule HOM05D003747 ORTHO05D005080 1.3e-157 561.2 827 52.4
Duzib116G0012 Durio zibethinus HOM05D003747 ORTHO05D005080 1.7e-157 560.8 821 52.4
Oeu046243.1 Olea europaea HOM05D003747 ORTHO05D005080 2.8e-157 560.1 834 48.3
Phvul.007G231400 Phaseolus vulgaris HOM05D003747 ORTHO05D005080 2.8e-157 560.1 823 52.6
ATR0620G056 Amborella trichopoda HOM05D003747 ORTHO05D005080 3.7e-157 559.7 819 52.9
Oeu046245.1 Olea europaea HOM05D003747 ORTHO05D005080 3.7e-157 559.7 834 48.3
Cc10_g02100 Coffea canephora HOM05D003747 ORTHO05D005080 4.8e-157 559.3 821 52.3
Solyc04g081050.2 Solanum lycopersicum HOM05D003747 ORTHO05D005080 8.3e-157 558.5 822 51.5
EL10Ac1g00554 Beta vulgaris HOM05D003747 ORTHO05D005080 1.1e-156 558.1 821 50.9
CAN.G851.8 Capsicum annuum HOM05D003747 ORTHO05D005080 1.1e-156 558.1 822 51.9
Sopen04g034670 Solanum pennellii HOM05D003747 ORTHO05D005080 1.1e-156 558.1 822 51.3
TPR.G16935 Trifolium pratense HOM05D003747 ORTHO05D005080 1.8e-156 557.4 826 51.6
VMungo0720G2667 Vigna mungo HOM05D003747 ORTHO05D005080 3.1e-156 556.6 823 52.5
AT1G05150 Arabidopsis thaliana HOM05D003747 ORTHO05D005080 5.4e-156 555.8 835 51.5
Hma1.2p1_0773F.1_g216160 Hydrangea macrophylla HOM05D003747 ORTHO05D005080 5.4e-156 555.8 822 48.2
CiPaw.07G154200 Carya illinoinensis HOM05D003747 ORTHO05D005080 2.7e-155 553.5 824 52.8
Psat0s1558g0040 Pisum sativum HOM05D003747 ORTHO05D005080 7.7e-155 552.0 822 50.7
Ah.05g171920 Amaranthus hybridus HOM05D003747 ORTHO05D005080 1.0e-154 551.6 824 50.1
AL4G27840 Arabidopsis lyrata HOM05D003747 ORTHO05D005080 1.7e-154 550.8 828 50.7
Sc02g0005230 Simmondsia chinensis HOM05D003747 ORTHO05D005080 1.7e-154 550.8 828 49.4
Aa31LG5G4820 Aethionema arabicum HOM05D003747 ORTHO05D005080 2.2e-154 550.4 823 50.8
AT2G32450 Arabidopsis thaliana HOM05D003747 ORTHO05D005080 2.9e-154 550.1 826 50.8
SGA_v2.0_scaffold326G48749 Striga asiatica HOM05D003747 ORTHO05D005080 2.9e-154 550.1 828 51.2
DCAR_022445 Daucus carota HOM05D003747 ORTHO05D005080 3.8e-154 549.7 824 50.8
Carub.0004s1380 Capsella rubella HOM05D003747 ORTHO05D005080 1.1e-153 548.1 830 50.4
CARHR126280 Cardamine hirsuta HOM05D003747 ORTHO05D005080 1.9e-153 547.4 835 50.5
Lsat_1_v5_gn_5_26081 Lactuca sativa HOM05D003747 ORTHO05D005080 2.5e-153 547.0 835 51.4
TWI12G0622 Tripterygium wilfordii HOM05D003747 ORTHO05D005080 2.5e-153 547.0 819 52.1
Cpa.g.sc140.21 Carica papaya HOM05D003747 ORTHO05D005080 3.2e-153 546.6 795 53.3
BcaNung05933 Brassica carinata HOM05D003747 ORTHO05D005080 5.5e-153 545.8 835 45.9
Migut.N03134 Erythranthe guttata HOM05D003747 ORTHO05D005080 7.2e-153 545.4 828 51.2
Mapoly0016s0016 Marchantia polymorpha HOM05D003747 ORTHO05D005080 1.0e-151 541.6 862 47.4
ECA246G3046 Erigeron canadensis HOM05D003747 ORTHO05D005080 1.4e-151 541.2 847 48.4
Zm00001eb011630 Zea mays HOM05D003747 ORTHO05D005080 1.2e-150 538.1 848 48.8
HanXRQChr09g0269391 Helianthus annuus HOM05D003747 ORTHO05D005080 1.5e-150 537.7 830 43.5
SHI08097 Sapria himalayana HOM05D003747 ORTHO05D005080 4.4e-150 536.2 821 49.6
Gohir.A01G113100 Gossypium hirsutum HOM05D003747 ORTHO05D005080 9.8e-150 535.0 796 52.6
Pp3c1_8310 Physcomitrium patens HOM05D003747 ORTHO05D005080 1.3e-149 534.6 836 49.8
CSS0007586 Camellia sinensis var. sinensis HOM05D003747 ORTHO05D005080 8.3e-149 531.9 797 46.3
Zm00001eb398060 Zea mays HOM05D003747 ORTHO05D005080 4.1e-148 529.6 837 49.2
MSTRG.25220 Avicennia marina HOM05D003747 ORTHO05D005080 5.4e-148 529.3 825 47.5
TAR376G0643 Trochodendron aralioides HOM05D003747 ORTHO05D005080 1.2e-147 528.1 836 50.5
Pp3c2_26690 Physcomitrium patens HOM05D003747 ORTHO05D005080 3.5e-147 526.6 865 49.2
TAR628G0607 Trochodendron aralioides HOM05D003747 ORTHO05D005080 5.9e-147 525.8 821 49.3
Os03g0263900 Oryza sativa ssp. japonica HOM05D003747 ORTHO05D005080 2.3e-146 523.9 862 47.0
Nn5g29219 Nelumbo nucifera HOM05D003747 ORTHO05D005080 2.1e-144 517.3 820 49.3
Lsat_1_v5_gn_4_116240 Lactuca sativa HOM05D003747 ORTHO05D005080 3.6e-144 516.5 800 47.8
AagrBONN_evm.TU.Sc2ySwM_228.5529 Anthoceros agrestis HOM05D003747 ORTHO05D005080 8.9e-143 511.9 803 44.7
AUR62034569 Chenopodium quinoa HOM05D003747 ORTHO05D005080 1.5e-142 511.1 815 49.3
Dinv31811 Davidia involucrata HOM05D003747 ORTHO05D005080 9.8e-142 508.4 832 50.1
AUR62014428 Chenopodium quinoa HOM05D003747 ORTHO05D005080 8.3e-141 505.4 815 48.6
Aqoxy5G01483 Aquilegia oxysepala HOM05D003747 ORTHO05D005080 1.2e-139 501.5 820 48.3
MBI16_g07670_MAGBIO Magnolia biondii HOM05D003747 ORTHO05D005080 5.9e-139 499.2 808 50.2
PGSC0003DMG400003764 Solanum tuberosum HOM05D003747 ORTHO05D005080 7.8e-139 498.8 870 45.4
HanXRQChr05g0156281 Helianthus annuus HOM05D003747 ORTHO05D005080 1.8e-135 487.6 844 44.5
Nn6g32245 Nelumbo nucifera HOM05D003747 ORTHO05D005080 4.4e-134 483.0 728 53.6
CSS0038687 Camellia sinensis var. sinensis HOM05D003747 ORTHO05D005080 1.5e-129 468.0 820 49.3
Actinidia15389 Actinidia chinensis HOM05D003747 ORTHO05D005080 4.7e-128 463.0 755 49.8
GSVIVG01009826001 Vitis vinifera HOM05D003747 ORTHO05D005080 3.1e-127 460.3 744 51.7
CDE05G0031 Ceratophyllum demersum HOM05D003747 ORTHO05D005080 1.3e-117 428.3 667 52.8
unitig_899.g15539 Utricularia gibba HOM05D003747 ORTHO05D005080 2.7e-115 420.6 718 49.9
CBR_g21825 Chara braunii HOM05D003747 ORTHO05D005080 7.8e-115 419.1 905 40.2
ECA232G3638 Erigeron canadensis HOM05D003747 ORTHO05D005080 3.6e-112 410.2 748 44.7
Cc10_g07350 Coffea canephora HOM05D003747 ORTHO05D005080 6.9e-111 406.0 837 41.8
CDE02G1942 Ceratophyllum demersum HOM05D003747 ORTHO05D005080 1.1e-105 388.7 783 42.4
HPP92_006843 Vanilla planifolia HOM05D003747 ORTHO05D005080 7.6e-102 375.9 795 42.1
unitig_746.g26813 Utricularia gibba HOM05D003747 ORTHO05D005080 5.5e-92 343.2 651 50.2
CsaV3_1G045460 Cucumis sativus L. HOM05D003747 ORTHO05D005080 7.6e-86 322.8 342 51.5
FAN14G4182 Fragaria x ananassa HOM05D003747 ORTHO05D005080 1.2e-83 315.5 346 50.0
CDE10G1342 Ceratophyllum demersum HOM05D003747 ORTHO05D005080 2.7e-83 314.3 765 31.5
HPP92_027213 Vanilla planifolia HOM05D003747 ORTHO05D005080 4.8e-80 303.5 354 48.3
CsaV3_1G045450 Cucumis sativus L. HOM05D003747 ORTHO05D005080 1.5e-70 271.9 355 43.7
CsaV3_UNG233290 Cucumis sativus L. HOM05D003747 ORTHO05D005080 1.5e-70 271.9 355 43.7
CsaV3_UNG233280 Cucumis sativus L. HOM05D003747 ORTHO05D005080 8.8e-66 256.1 318 46.2
Rhsim06G0014300 Rhododendron simsii HOM05D003747 ORTHO05D000001 3.0e-50 204.5 349 36.4
BolC8t46977H Brassica oleracea HOM05D003747 ORTHO05D016772 1.5e-41 175.6 224 44.2
FAN05G3899 Fragaria x ananassa HOM05D003747 ORTHO05D005080 1.5e-41 175.6 161 55.9
C08p01770 Brassica napus HOM05D003747 ORTHO05D016772 1.3e-40 172.6 225 43.1
FAN20G0559 Fragaria x ananassa HOM05D003747 ORTHO05D005080 1.3e-40 172.6 162 54.9
FAN12G1591 Fragaria x ananassa HOM05D003747 ORTHO05D005080 3.1e-39 167.9 160 54.4
FAN03G1393 Fragaria x ananassa HOM05D003747 ORTHO05D005080 5.4e-39 167.2 160 54.4
FAN05G3181 Fragaria x ananassa HOM05D002705 ORTHO05D004955 6.3e-32 143.7 111 63.1
FAN01G1045 Fragaria x ananassa HOM05D002705 ORTHO05D004955 4.1e-31 141.0 111 62.2
FAN17G2187 Fragaria x ananassa HOM05D002705 ORTHO05D004955 2.7e-30 138.3 108 63.9
HPP92_027212 Vanilla planifolia HOM05D003747 ORTHO05D051588 1.1e-28 132.9 203 36.9
HanXRQChr13g0424291 Helianthus annuus HOM05D003747 ORTHO05D005080 4.4e-25 120.9 192 34.9
TAR628G1670 Trochodendron aralioides HOM05D003747 ORTHO05D016772 4.4e-25 120.9 248 34.3
Lj3A743G72 Lonicera japonica HOM05D000041 ORTHO05D000452 1.1e-23 116.3 92 59.8
Lj3A744G93 Lonicera japonica HOM05D000041 ORTHO05D000452 2.4e-23 115.2 92 59.8
unitig_746.g26812 Utricularia gibba HOM05D003747 ORTHO05D016772 9.2e-23 113.2 113 49.6
Zm00001eb159690 Zea mays HOM05D003747 ORTHO05D051588 5.9e-22 110.5 189 36.5
Pp3c1_6530 Physcomitrium patens HOM05D003747 ORTHO05D005080 1.1e-20 106.3 87 58.6
Rhsim06G0014800 Rhododendron simsii HOM05D003747 ORTHO05D005080 1.5e-20 105.9 251 30.7
Rhsim06G0013900 Rhododendron simsii HOM05D003747 ORTHO05D005080 3.3e-20 104.8 192 34.9
HPP92_027211 Vanilla planifolia HOM05D003747 ORTHO05D016772 5.6e-20 104.0 101 53.5
BcaC07g36860 Brassica carinata HOM05D003747 ORTHO05D016772 1.6e-19 102.4 81 56.8
Lsat_1_v5_gn_4_36661 Lactuca sativa HOM05D003747 ORTHO05D005080 2.6e-17 95.1 88 55.7
Lj3A744G94 Lonicera japonica HOM05D000041 ORTHO05D004955 9.8e-17 93.2 72 59.7
unitig_899.g15538 Utricularia gibba HOM05D003747 ORTHO05D016772 9.8e-17 93.2 86 50.0
BcaC05g24429 Brassica carinata HOM05D003747 ORTHO05D016772 1.3e-16 92.8 74 55.4
Cpa.g.sc99.31 Carica papaya HOM05D003747 ORTHO05D005080 1.7e-13 82.4 90 47.8
Nn5g30522 Nelumbo nucifera HOM05D003747 ORTHO05D005080 1.6e-11 75.9 61 55.7
Lsat_1_v5_gn_8_75581 Lactuca sativa HOM05D000041 ORTHO05D000452 1.1e-10 73.2 83 43.4
Lj3A751T54 Lonicera japonica HOM05D000041 ORTHO05D000452 1.4e-10 72.8 101 34.7
Lj3A751T55 Lonicera japonica HOM05D000041 ORTHO05D000452 5.8e-09 67.4 103 34.0
BcaC07g36859 Brassica carinata HOM05D003747 ORTHO05D016772 2.4e-07 62.0 102 35.3
Rhsim06G0014000 Rhododendron simsii HOM05D003747 ORTHO05D005080 2.4e-07 62.0 41 70.7
HanXRQChr14g0454921 Helianthus annuus HOM05D000041 ORTHO05D000452 1.6e-06 59.3 96 37.5
HanXRQChr17g0545051 Helianthus annuus HOM05D000041 ORTHO05D000452 1.6e-06 59.3 96 37.5


User provided reference genes

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