Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO331G0022 Selaginella moellendorffii HOM05D005861 ORTHO05D007151 3.1e-248 861.3 425 100.0
AagrBONN_evm.TU.Sc2ySwM_344.4889 Anthoceros agrestis HOM05D005861 ORTHO05D007151 1.7e-140 503.4 415 56.4
Mapoly0003s0096 Marchantia polymorpha HOM05D005861 ORTHO05D007151 7.7e-138 494.6 423 54.8
Pp3c8_21700 Physcomitrium patens HOM05D005861 ORTHO05D007151 1.0e-137 494.2 420 54.3
MELO3C002396.2 Cucumis melo HOM05D005861 ORTHO05D007151 6.7e-134 481.5 427 52.2
Atru.chr10.266 Acer truncatum HOM05D005861 ORTHO05D007151 2.0e-133 479.9 436 52.3
Aqoxy3G04101 Aquilegia oxysepala HOM05D005861 ORTHO05D007151 2.0e-133 479.9 423 53.2
Prupe.4G119100 Prunus persica HOM05D005861 ORTHO05D007151 2.0e-133 479.9 433 52.9
GSVIVG01012161001 Vitis vinifera HOM05D005861 ORTHO05D007151 2.0e-133 479.9 427 53.2
Ciclev10015087m.g Citrus clementina HOM05D005861 ORTHO05D007151 4.4e-133 478.8 436 52.3
Sed0025210 Sechium edule HOM05D005861 ORTHO05D007151 5.7e-133 478.4 424 52.8
MD10G1226200 Malus domestica HOM05D005861 ORTHO05D007151 1.3e-132 477.2 433 52.4
Glyma.09G049800 Glycine max HOM05D005861 ORTHO05D007151 1.7e-132 476.9 435 52.4
Cfa001144 Carpinus fangiana HOM05D005861 ORTHO05D007151 3.7e-132 475.7 432 51.6
TWI38G1305 Tripterygium wilfordii HOM05D005861 ORTHO05D007151 3.7e-132 475.7 425 53.6
Gohir.A05G011700 Gossypium hirsutum HOM05D005861 ORTHO05D007151 6.3e-132 474.9 422 53.1
FvH4_3g13130 Fragaria vesca HOM05D005861 ORTHO05D007151 8.2e-132 474.6 424 52.1
CsaV3_1G010060 Cucumis sativus L. HOM05D005861 ORTHO05D007151 1.4e-131 473.8 424 51.7
AT4G20130 Arabidopsis thaliana HOM05D005861 ORTHO05D007151 1.8e-131 473.4 420 53.6
ClCG03G004130 Citrullus lanatus HOM05D005861 ORTHO05D007151 1.8e-131 473.4 424 51.9
Gorai.009G012700 Gossypium raimondii HOM05D005861 ORTHO05D007151 1.8e-131 473.4 426 52.6
Manes.03G071200 Manihot esculenta HOM05D005861 ORTHO05D007151 1.8e-131 473.4 424 53.8
Thecc.09G140900 Theobroma cacao HOM05D005861 ORTHO05D007151 1.8e-131 473.4 424 52.1
QL11p011864 Quercus lobata HOM05D005861 ORTHO05D007151 2.4e-131 473.0 426 53.1
QL93p0142_0007 Quercus lobata HOM05D005861 ORTHO05D007151 2.4e-131 473.0 426 53.1
TAR636G0982 Trochodendron aralioides HOM05D005861 ORTHO05D007151 2.4e-131 473.0 425 52.5
Lalb_Chr18g0052021 Lupinus albus HOM05D005861 ORTHO05D007151 3.1e-131 472.6 425 52.9
Eucgr.D00007 Eucalyptus grandis HOM05D005861 ORTHO05D007151 4.1e-131 472.2 426 52.3
Nn7g38377 Nelumbo nucifera HOM05D005861 ORTHO05D007151 4.1e-131 472.2 425 52.2
PSO782G3554 Papaver somniferum HOM05D005861 ORTHO05D007151 4.1e-131 472.2 436 51.6
PSO063G0366 Papaver somniferum HOM05D005861 ORTHO05D007151 9.1e-131 471.1 436 51.1
arahy.Tifrunner.gnm1.ann1.MH4CM1 Arachis hypogaea HOM05D005861 ORTHO05D007151 1.2e-130 470.7 424 52.6
Lj6g0026320 Lotus japonicus HOM05D005861 ORTHO05D007151 1.6e-130 470.3 436 52.1
Dinv05874 Davidia involucrata HOM05D005861 ORTHO05D007151 2.0e-130 469.9 427 52.0
THA.LOC104811881 Tarenaya hassleriana HOM05D005861 ORTHO05D007151 2.0e-130 469.9 421 52.0
CARHR226960 Cardamine hirsuta HOM05D005861 ORTHO05D007151 5.9e-130 468.4 420 52.1
CAN.G809.40 Capsicum annuum HOM05D005861 ORTHO05D007151 7.7e-130 468.0 428 51.4
RcHm_v2.0_Chr5g0021381 Rosa chinensis HOM05D005861 ORTHO05D007151 7.7e-130 468.0 424 51.9
Glyma.15G156500 Glycine max HOM05D005861 ORTHO05D007151 1.0e-129 467.6 436 52.3
Solyc02g081920.3 Solanum lycopersicum HOM05D005861 ORTHO05D007151 1.3e-129 467.2 427 51.5
BcaB03g11658 Brassica carinata HOM05D005861 ORTHO05D007151 2.2e-129 466.5 420 52.1
Carub.0007s2100 Capsella rubella HOM05D005861 ORTHO05D007151 2.2e-129 466.5 420 52.4
Sopen02g026550 Solanum pennellii HOM05D005861 ORTHO05D007151 2.2e-129 466.5 427 51.5
VMungo1309G1344 Vigna mungo HOM05D005861 ORTHO05D007151 2.2e-129 466.5 427 52.2
Aa31LG6G2540 Aethionema arabicum HOM05D005861 ORTHO05D007151 2.9e-129 466.1 426 52.8
Medtr2g035660 Medicago truncatula HOM05D005861 ORTHO05D007151 3.8e-129 465.7 424 51.7
AL7G33690 Arabidopsis lyrata HOM05D005861 ORTHO05D007151 5.0e-129 465.3 420 52.4
SGA_v2.0_scaffold298G47711 Striga asiatica HOM05D005861 ORTHO05D007151 8.5e-129 464.5 429 50.3
Migut.M02023 Erythranthe guttata HOM05D005861 ORTHO05D007151 1.1e-128 464.2 427 50.6
PGSC0003DMG401007333 Solanum tuberosum HOM05D005861 ORTHO05D007151 1.1e-128 464.2 428 51.4
FAN16G2684 Fragaria x ananassa HOM05D005861 ORTHO05D007151 1.5e-128 463.8 451 48.8
BcaC01g00656 Brassica carinata HOM05D005861 ORTHO05D007151 2.5e-128 463.0 420 52.1
FAN21G1611 Fragaria x ananassa HOM05D005861 ORTHO05D007151 3.2e-128 462.6 451 48.8
Peaxi162Scf00036g00158 Petunia axillaris HOM05D005861 ORTHO05D007151 3.2e-128 462.6 422 50.9
Sc24g0002940 Simmondsia chinensis HOM05D005861 ORTHO05D007151 4.2e-128 462.2 416 51.2
C03p82790 Brassica napus HOM05D005861 ORTHO05D007151 9.4e-128 461.1 420 51.9
BolC3t20561H Brassica oleracea HOM05D005861 ORTHO05D007151 9.4e-128 461.1 420 51.9
Migut.O00467 Erythranthe guttata HOM05D005861 ORTHO05D007151 9.4e-128 461.1 427 50.6
Sp7g18560 Schrenkiella parvula HOM05D005861 ORTHO05D007151 1.6e-127 460.3 420 51.9
MSTRG.18594 Avicennia marina HOM05D005861 ORTHO05D007151 2.7e-127 459.5 427 50.4
Potri.003G155100 Populus trichocarpa HOM05D005861 ORTHO05D007151 3.6e-127 459.1 427 50.8
Phvul.009G243500 Phaseolus vulgaris HOM05D005861 ORTHO05D007151 4.7e-127 458.8 427 51.3
TPR.G26579 Trifolium pratense HOM05D005861 ORTHO05D007151 6.1e-127 458.4 427 51.3
A08p14640 Brassica napus HOM05D005861 ORTHO05D007151 1.0e-126 457.6 420 51.4
BraA08t33451Z Brassica rapa HOM05D005861 ORTHO05D007151 1.0e-126 457.6 420 51.4
CSS0003156 Camellia sinensis var. sinensis HOM05D005861 ORTHO05D007151 1.4e-126 457.2 428 50.9
Cc09_g01980 Coffea canephora HOM05D005861 ORTHO05D007151 6.7e-126 454.9 415 51.6
DCAR_003751 Daucus carota HOM05D005861 ORTHO05D007151 2.2e-124 449.9 385 54.8
PGR004G1814 Punica granatum HOM05D005861 ORTHO05D007151 4.8e-124 448.7 401 53.1
Nitab4.5_0000844g0330 Nicotiana tabacum HOM05D005861 ORTHO05D007151 8.2e-124 448.0 459 47.3
Haze_05240 Corylus avellana HOM05D005861 ORTHO05D007151 2.0e-122 443.4 489 45.4
EL10Ac3g07109 Beta vulgaris HOM05D005861 ORTHO05D007151 2.7e-122 443.0 387 52.7
HanXRQChr04g0116561 Helianthus annuus HOM05D005861 ORTHO05D007151 1.0e-121 441.0 415 50.4
Psat1g150560 Pisum sativum HOM05D005861 ORTHO05D007151 1.0e-121 441.0 382 53.4
Thhalv10027180m.g Eutrema salsugineum HOM05D005861 ORTHO05D007151 1.3e-121 440.7 420 50.5
TWI63G1685 Tripterygium wilfordii HOM05D005861 ORTHO05D007151 2.2e-121 439.9 428 50.7
ECA236G3447 Erigeron canadensis HOM05D005861 ORTHO05D007151 3.8e-121 439.1 415 49.4
Oeu008732.1 Olea europaea HOM05D005861 ORTHO05D007151 6.5e-121 438.3 390 52.3
arahy.Tifrunner.gnm1.ann1.RN3XR3 Arachis hypogaea HOM05D005861 ORTHO05D007151 3.2e-120 436.0 424 50.2
Nitab4.5_0000632g0140 Nicotiana tabacum HOM05D005861 ORTHO05D007151 1.8e-118 430.3 427 48.7
unitig_37.g12046 Utricularia gibba HOM05D005861 ORTHO05D007151 1.4e-115 420.6 422 46.9
FAN25G2772 Fragaria x ananassa HOM05D005861 ORTHO05D007151 5.4e-115 418.7 457 46.0
vmacro03562 Vaccinium macrocarpon HOM05D005861 ORTHO05D007151 1.6e-111 407.1 536 39.9
Gohir.D05G012400 Gossypium hirsutum HOM05D005861 ORTHO05D007151 2.1e-111 406.8 367 51.8
CiPaw.09G138900 Carya illinoinensis HOM05D005861 ORTHO05D007151 3.6e-111 406.0 424 47.2
Duzib168G0529 Durio zibethinus HOM05D005861 ORTHO05D007151 1.3e-105 387.5 419 46.3
ATR0763G186 Amborella trichopoda HOM05D005479 ORTHO05D007756 5.0e-105 385.6 300 58.0
CDE02G4422 Ceratophyllum demersum HOM05D005861 ORTHO05D007151 2.5e-104 383.3 345 52.5
AUR62040329 Chenopodium quinoa HOM05D005861 ORTHO05D007151 6.1e-103 378.6 384 47.1
Gohir.D05G012700 Gossypium hirsutum HOM05D005861 ORTHO05D007151 1.0e-102 377.9 316 54.7
AUR62039890 Chenopodium quinoa HOM05D005861 ORTHO05D007151 1.4e-102 377.5 383 47.0
Zm00001eb345040 Zea mays HOM05D005861 ORTHO05D007151 1.8e-102 377.1 372 48.1
Cpa.g.sc30.93 Carica papaya HOM05D005861 ORTHO05D007151 4.0e-102 375.9 405 46.2
Lsat_1_v5_gn_7_27441 Lactuca sativa HOM05D005861 ORTHO05D007151 5.0e-97 359.0 305 53.1
Ah.08g212320 Amaranthus hybridus HOM05D005861 ORTHO05D007151 3.1e-94 349.7 397 42.8
CBR_g61479 Chara braunii HOM05D005861 ORTHO05D007151 3.7e-92 342.8 429 41.3
Sabra03G0112200 Salix brachista HOM05D005861 ORTHO05D007151 9.2e-91 338.2 459 40.1
COL.COLO4_24113 Corchorus olitorius HOM05D005861 ORTHO05D003578 2.7e-74 283.5 380 41.1
Gorai.N022300 Gossypium raimondii HOM05D005861 ORTHO05D007151 8.1e-71 271.9 283 47.3
HPP92_009503 Vanilla planifolia HOM05D005861 ORTHO05D007151 3.8e-60 236.5 236 49.2
A04p29830 Brassica napus HOM05D005861 ORTHO05D007151 1.3e-57 228.0 278 41.4
Ca_01979_v3 Cicer arietinum L. HOM05D005861 ORTHO05D007151 2.8e-55 220.3 223 48.4
Lj1g0026190 Lotus japonicus HOM05D005861 ORTHO05D007151 6.2e-55 219.2 231 45.9
Hund25553 Selenicereus undatus HOM05D005861 ORTHO05D007151 3.1e-54 216.9 258 42.6
BraA04t18443Z Brassica rapa HOM05D005861 ORTHO05D007151 2.3e-49 200.7 256 40.6
Ca_28373_v3 Cicer arietinum L. HOM05D005861 ORTHO05D007151 3.9e-49 199.9 140 61.4
Cfa001273 Carpinus fangiana HOM05D005861 ORTHO05D007151 1.5e-45 188.0 223 43.5
RcHm_v2.0_Chr5g0063511 Rosa chinensis HOM05D005861 ORTHO05D007151 3.3e-40 170.2 115 62.6
QL93p2001_0005 Quercus lobata HOM05D005861 ORTHO05D007151 3.2e-35 153.7 166 47.0
MD05G1244800 Malus domestica HOM05D005861 ORTHO05D007151 6.1e-34 149.4 210 38.6
Lj6g0014924 Lotus japonicus HOM05D005861 ORTHO05D007151 6.9e-30 136.0 99 56.6
HPP92_009502 Vanilla planifolia HOM05D005861 ORTHO05D007151 1.2e-29 135.2 131 45.8
RcHm_v2.0_Chr3g0456081 Rosa chinensis HOM05D005861 ORTHO05D007151 2.2e-28 131.0 97 55.7
VMungo0344G0001 Vigna mungo HOM05D005861 ORTHO05D007151 6.5e-28 129.4 125 50.4
VMungo1383G1601 Vigna mungo HOM05D005861 ORTHO05D007151 6.5e-28 129.4 125 50.4
Duzib187G1938 Durio zibethinus HOM05D005861 ORTHO05D007151 1.2e-26 125.2 102 52.0
Lj4g0007893 Lotus japonicus HOM05D005861 ORTHO05D007151 1.2e-26 125.2 90 58.9
Os05g0587200 Oryza sativa ssp. japonica HOM05D005861 ORTHO05D007151 3.6e-26 123.6 90 54.4
Lj3g0008154 Lotus japonicus HOM05D005861 ORTHO05D007151 6.7e-25 119.4 140 41.4
Lj1g0019510 Lotus japonicus HOM05D005861 ORTHO05D007151 1.8e-22 111.3 65 69.2
Lj1g0009858 Lotus japonicus HOM05D005861 ORTHO05D007151 1.4e-14 85.1 111 40.5
PGSC0003DMG400012780 Solanum tuberosum HOM05D005861 ORTHO05D007151 5.3e-14 83.2 99 42.4
Prupe.1G278900 Prunus persica HOM05D005456 ORTHO05D006805 1.2e-13 82.0 405 25.4
Phvul.002G169400 Phaseolus vulgaris HOM05D005456 ORTHO05D006805 3.8e-12 77.0 412 24.0
AUR62032826 Chenopodium quinoa HOM05D005456 ORTHO05D006805 8.5e-12 75.9 402 24.9
Cc11_g12670 Coffea canephora HOM05D005456 ORTHO05D006805 8.5e-12 75.9 410 23.9
FAN12G1233 Fragaria x ananassa HOM05D005456 ORTHO05D006805 8.5e-12 75.9 400 25.5
RcHm_v2.0_Chr4g0439211 Rosa chinensis HOM05D005456 ORTHO05D006805 8.5e-12 75.9 407 24.1
MD16G1067900 Malus domestica HOM05D005456 ORTHO05D006805 2.5e-11 74.3 407 24.6
FAN17G1535 Fragaria x ananassa HOM05D005456 ORTHO05D006805 7.2e-11 72.8 400 25.0
A03p17620 Brassica napus HOM05D005861 ORTHO05D007151 9.4e-11 72.4 47 61.7
FAN07G2817 Fragaria x ananassa HOM05D005456 ORTHO05D006805 9.4e-11 72.4 407 24.1
Thecc.02G340400 Theobroma cacao HOM05D005456 ORTHO05D006805 1.2e-10 72.0 403 24.6
AUR62005833 Chenopodium quinoa HOM05D005456 ORTHO05D006805 1.6e-10 71.6 401 24.4
PGSC0003DMG400028348 Solanum tuberosum HOM05D005456 ORTHO05D006805 2.1e-10 71.2 409 25.4
THA.LOC104801808 Tarenaya hassleriana HOM05D005456 ORTHO05D006805 2.1e-10 71.2 407 27.0
Solyc05g013160.4 Solanum lycopersicum HOM05D005456 ORTHO05D006805 2.7e-10 70.9 409 25.4
Ah.02g129440 Amaranthus hybridus HOM05D005456 ORTHO05D006805 6.1e-10 69.7 402 24.6
CANSAT64G0403 Cannabis sativa HOM05D005456 ORTHO05D006805 6.1e-10 69.7 401 24.9
Gorai.005G142600 Gossypium raimondii HOM05D005456 ORTHO05D006805 6.1e-10 69.7 403 23.3
Sopen05g007900 Solanum pennellii HOM05D005456 ORTHO05D006805 6.1e-10 69.7 409 25.2
Ah.03g134770 Amaranthus hybridus HOM05D005456 ORTHO05D006805 8.0e-10 69.3 401 23.4
AL1G25870 Arabidopsis lyrata HOM05D005456 ORTHO05D006805 1.0e-09 68.9 409 24.0
BcaB08g34359 Brassica carinata HOM05D005456 ORTHO05D006805 1.0e-09 68.9 405 24.2
Ah.11g040820 Amaranthus hybridus HOM05D005861 ORTHO05D007151 1.8e-09 68.2 85 40.0
Duzib251G0039 Durio zibethinus HOM05D005456 ORTHO05D006805 3.0e-09 67.4 408 23.5
PSO063G4701 Papaver somniferum HOM05D005456 ORTHO05D006805 3.0e-09 67.4 418 23.7
MD05G1244900 Malus domestica HOM05D005861 ORTHO05D007151 5.2e-09 66.6 73 43.8
FAN22G2029 Fragaria x ananassa HOM05D005456 ORTHO05D006805 6.8e-09 66.2 387 24.8
Gohir.A03G102200 Gossypium hirsutum HOM05D005456 ORTHO05D006805 6.8e-09 66.2 408 23.3
TWI79G0373 Tripterygium wilfordii HOM05D005456 ORTHO05D006805 6.8e-09 66.2 414 24.4
PSO063G1835 Papaver somniferum HOM05D005456 ORTHO05D006805 8.8e-09 65.9 415 24.8
Hund25214 Selenicereus undatus HOM05D005456 ORTHO05D006805 1.2e-08 65.5 401 23.9
Carub.0001s1372 Capsella rubella HOM05D005456 ORTHO05D006805 2.0e-08 64.7 409 24.0
A03p17610 Brassica napus HOM05D005861 ORTHO05D007151 2.6e-08 64.3 55 54.5
Atru.chr11.1728 Acer truncatum HOM05D005456 ORTHO05D006805 3.4e-08 63.9 401 22.2
Eucgr.G02480 Eucalyptus grandis HOM05D005456 ORTHO05D006805 3.4e-08 63.9 325 23.7
Rhsim12G0132700 Rhododendron simsii HOM05D005456 ORTHO05D006805 3.4e-08 63.9 406 23.6
TAR622G0968 Trochodendron aralioides HOM05D005456 ORTHO05D006805 3.4e-08 63.9 401 23.2
HanXRQChr12g0362651 Helianthus annuus HOM05D005416 ORTHO05D007956 4.4e-08 63.5 368 25.3
BolC8t52161H Brassica oleracea HOM05D005456 ORTHO05D006805 7.5e-08 62.8 418 23.4
Lsat_1_v5_gn_8_46201 Lactuca sativa HOM05D005416 ORTHO05D007956 7.5e-08 62.8 394 25.4
Peaxi162Scf00222g00327 Petunia axillaris HOM05D005456 ORTHO05D006805 9.7e-08 62.4 414 24.2
COL.COLO4_27983 Corchorus olitorius HOM05D005456 ORTHO05D006805 1.3e-07 62.0 423 23.6
C08p46110 Brassica napus HOM05D005456 ORTHO05D006805 1.7e-07 61.6 422 23.7
BraA09t41618Z Brassica rapa HOM05D005456 ORTHO05D006805 2.2e-07 61.2 424 23.6
Mapoly0065s0091 Marchantia polymorpha HOM05D005456 ORTHO05D006805 2.8e-07 60.8 363 26.4
A09p62550 Brassica napus HOM05D005456 ORTHO05D006805 3.7e-07 60.5 424 23.6
Cre16.g649700 Chlamydomonas reinhardtii HOM05D005861 ORTHO05D007151 6.3e-07 59.7 205 27.8
Solyc05g013150.4 Solanum lycopersicum HOM05D005456 ORTHO05D006805 6.3e-07 59.7 317 25.9
PGSC0003DMG400028394 Solanum tuberosum HOM05D005456 ORTHO05D006805 2.4e-06 57.8 341 23.5
ECA233G0392 Erigeron canadensis HOM05D005416 ORTHO05D007956 3.1e-06 57.4 426 23.9
Atru.chr11.1727 Acer truncatum HOM05D005456 ORTHO05D006805 4.1e-06 57.0 397 22.4


User provided reference genes

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