Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO304G0134 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 1.2e-100 369.8 184 100.0
Gohir.A08G042700 Gossypium hirsutum HOM05D004412 ORTHO05D005316 1.7e-57 226.5 179 58.7
Gorai.004G052600 Gossypium raimondii HOM05D004412 ORTHO05D005316 4.9e-57 224.9 179 58.7
Duzib211G0511 Durio zibethinus HOM05D004412 ORTHO05D005316 6.4e-57 224.6 179 59.2
Gohir.A12G131600 Gossypium hirsutum HOM05D004412 ORTHO05D005316 8.4e-57 224.2 179 58.1
Duzib211G0323 Durio zibethinus HOM05D004412 ORTHO05D005316 1.1e-56 223.8 179 59.2
Gohir.D08G052500 Gossypium hirsutum HOM05D004412 ORTHO05D005316 1.1e-56 223.8 179 58.7
Duzib138G0322 Durio zibethinus HOM05D004412 ORTHO05D005316 3.2e-56 222.2 179 58.1
Gohir.D12G135400 Gossypium hirsutum HOM05D004412 ORTHO05D005316 3.2e-56 222.2 179 58.1
Gorai.008G146400 Gossypium raimondii HOM05D004412 ORTHO05D005316 3.2e-56 222.2 179 58.1
CDE05G1992 Ceratophyllum demersum HOM05D004412 ORTHO05D005316 9.3e-56 220.7 180 59.4
RcHm_v2.0_Chr6g0293711 Rosa chinensis HOM05D004412 ORTHO05D005316 9.3e-56 220.7 179 57.0
Thecc.01G297900 Theobroma cacao HOM05D004412 ORTHO05D005316 9.3e-56 220.7 179 58.1
Os05g0367400 Oryza sativa ssp. japonica HOM05D004412 ORTHO05D005316 1.2e-55 220.3 184 56.5
Zm00001eb142350 Zea mays HOM05D004412 ORTHO05D005316 1.6e-55 219.9 179 57.0
COL.COLO4_23368 Corchorus olitorius HOM05D004412 ORTHO05D005316 2.1e-55 219.5 179 58.7
FvH4_2g25500 Fragaria vesca HOM05D004412 ORTHO05D005316 3.5e-55 218.8 179 57.5
Eucgr.H01156 Eucalyptus grandis HOM05D004412 ORTHO05D005316 6.0e-55 218.0 179 58.7
GSVIVG01027984001 Vitis vinifera HOM05D004412 ORTHO05D005316 7.9e-55 217.6 185 56.2
Aa31LG1G9690 Aethionema arabicum HOM05D004412 ORTHO05D005316 1.0e-54 217.2 179 57.0
THA.LOC104825974 Tarenaya hassleriana HOM05D004412 ORTHO05D005316 1.0e-54 217.2 182 58.2
CANSAT25G2200 Cannabis sativa HOM05D004412 ORTHO05D005316 3.0e-54 215.7 181 55.8
CANSAT25G3274 Cannabis sativa HOM05D004412 ORTHO05D005316 3.0e-54 215.7 181 55.8
TAR633G0484 Trochodendron aralioides HOM05D004412 ORTHO05D005316 3.0e-54 215.7 179 57.5
HPP92_013717 Vanilla planifolia HOM05D004412 ORTHO05D005316 3.0e-54 215.7 179 54.2
arahy.Tifrunner.gnm1.ann1.V4DRNI Arachis hypogaea HOM05D004412 ORTHO05D005316 3.9e-54 215.3 179 58.7
CDE11G0241 Ceratophyllum demersum HOM05D004412 ORTHO05D005316 5.1e-54 214.9 180 56.7
TPR.G9643 Trifolium pratense HOM05D004412 ORTHO05D005316 5.1e-54 214.9 179 57.5
TAR362G0097 Trochodendron aralioides HOM05D004412 ORTHO05D005316 5.1e-54 214.9 179 55.9
arahy.Tifrunner.gnm1.ann1.TC9I43 Arachis hypogaea HOM05D004412 ORTHO05D005316 1.1e-53 213.8 179 58.1
ECA247G0114 Erigeron canadensis HOM05D004412 ORTHO05D005316 1.1e-53 213.8 185 56.2
FAN24G2667 Fragaria x ananassa HOM05D004412 ORTHO05D005316 1.1e-53 213.8 180 57.2
Nn4g25831 Nelumbo nucifera HOM05D004412 ORTHO05D005316 1.5e-53 213.4 179 55.9
AagrBONN_evm.TU.Sc2ySwM_362.2756 Anthoceros agrestis HOM05D004412 ORTHO05D005316 1.9e-53 213.0 178 57.3
A10p01550 Brassica napus HOM05D000147 ORTHO05D001254 1.9e-53 213.0 184 56.5
Haze_04907 Corylus avellana HOM05D004412 ORTHO05D005316 1.9e-53 213.0 179 56.4
Hma1.2p1_0491F.1_g164430 Hydrangea macrophylla HOM05D004412 ORTHO05D005316 1.9e-53 213.0 179 56.4
BraA10t42430Z Brassica rapa HOM05D000147 ORTHO05D001254 2.5e-53 212.6 184 56.0
Manes.01G217400 Manihot esculenta HOM05D004412 ORTHO05D005316 2.5e-53 212.6 179 57.5
Prupe.8G259100 Prunus persica HOM05D004412 ORTHO05D005316 2.5e-53 212.6 179 55.3
Rhsim13G0011700 Rhododendron simsii HOM05D004412 ORTHO05D005316 2.5e-53 212.6 179 55.9
ATR0693G457 Amborella trichopoda HOM05D004412 ORTHO05D005316 3.3e-53 212.2 179 55.9
Psat0s3188g0040 Pisum sativum HOM05D004412 ORTHO05D005316 3.3e-53 212.2 179 56.4
Glyma.03G213500 Glycine max HOM05D004412 ORTHO05D005316 7.3e-53 211.1 179 56.4
BcaC05g24629 Brassica carinata HOM05D004412 ORTHO05D005316 9.6e-53 210.7 184 54.9
C05p01550 Brassica napus HOM05D000147 ORTHO05D001254 9.6e-53 210.7 184 54.9
Cfa005939 Carpinus fangiana HOM05D004412 ORTHO05D005316 9.6e-53 210.7 179 55.9
MD03G1285900 Malus domestica HOM05D004412 ORTHO05D005316 9.6e-53 210.7 179 55.3
Phvul.001G206100 Phaseolus vulgaris HOM05D004412 ORTHO05D005316 9.6e-53 210.7 179 56.4
TWI14G0137 Tripterygium wilfordii HOM05D004412 ORTHO05D005316 9.6e-53 210.7 179 56.4
vmacro02463 Vaccinium macrocarpon HOM05D004412 ORTHO05D005316 9.6e-53 210.7 179 54.2
BolC5t28933H Brassica oleracea HOM05D004412 ORTHO05D005316 2.1e-52 209.5 181 55.2
Atru.chr5.1172 Acer truncatum HOM05D004412 ORTHO05D005316 2.8e-52 209.1 179 55.9
Hund05414 Selenicereus undatus HOM05D004412 ORTHO05D005316 2.8e-52 209.1 176 59.1
arahy.Tifrunner.gnm1.ann1.E95WBF Arachis hypogaea HOM05D004412 ORTHO05D005316 3.6e-52 208.8 180 57.8
Potri.014G130900 Populus trichocarpa HOM05D004412 ORTHO05D005316 3.6e-52 208.8 179 53.6
arahy.Tifrunner.gnm1.ann1.K6REY5 Arachis hypogaea HOM05D004412 ORTHO05D005316 4.8e-52 208.4 180 57.8
BcaB03g13500 Brassica carinata HOM05D004412 ORTHO05D005316 4.8e-52 208.4 184 55.4
ClCG09G005980 Citrullus lanatus HOM05D004412 ORTHO05D005316 4.8e-52 208.4 176 57.4
Sabra14G0097400 Salix brachista HOM05D004412 ORTHO05D005316 4.8e-52 208.4 179 55.3
Carub.0001s0201 Capsella rubella HOM05D004412 ORTHO05D005316 6.2e-52 208.0 179 54.2
Carub.0007s3652 Capsella rubella HOM05D004412 ORTHO05D005316 6.2e-52 208.0 179 54.2
HanXRQChr15g0465781 Helianthus annuus HOM05D004412 ORTHO05D005316 6.2e-52 208.0 179 55.3
Pp3c26_15150 Physcomitrium patens HOM05D004412 ORTHO05D005316 6.2e-52 208.0 180 56.7
CiPaw.07G106900 Carya illinoinensis HOM05D004412 ORTHO05D005316 8.1e-52 207.6 179 57.0
Potri.002G205800 Populus trichocarpa HOM05D004412 ORTHO05D005316 8.1e-52 207.6 179 55.3
QL12p027258 Quercus lobata HOM05D004412 ORTHO05D005316 8.1e-52 207.6 178 55.1
Aqoxy5G00729 Aquilegia oxysepala HOM05D004412 ORTHO05D005316 1.8e-51 206.5 179 57.0
BcaB03g15756 Brassica carinata HOM05D004412 ORTHO05D005316 1.8e-51 206.5 184 54.3
PGR119G0650 Punica granatum HOM05D004412 ORTHO05D005316 1.8e-51 206.5 179 57.0
Sc05g0004150 Simmondsia chinensis HOM05D004412 ORTHO05D005316 1.8e-51 206.5 179 56.4
TWI59G0713 Tripterygium wilfordii HOM05D004412 ORTHO05D005316 1.8e-51 206.5 179 55.3
Ca_09149_v3 Cicer arietinum L. HOM05D004412 ORTHO05D005316 2.4e-51 206.1 179 56.4
MD11G1305700 Malus domestica HOM05D004412 ORTHO05D005316 2.4e-51 206.1 179 54.2
Lj1g0006783 Lotus japonicus HOM05D004412 ORTHO05D005316 4.0e-51 205.3 179 54.7
A08p37550 Brassica napus HOM05D004412 ORTHO05D005316 5.3e-51 204.9 179 55.3
Hund18137 Selenicereus undatus HOM05D004412 ORTHO05D005316 5.3e-51 204.9 179 56.4
DCAR_002821 Daucus carota HOM05D004412 ORTHO05D005316 6.9e-51 204.5 175 57.1
Manes.05G063600 Manihot esculenta HOM05D004412 ORTHO05D005316 6.9e-51 204.5 179 54.7
Medtr7g108680 Medicago truncatula HOM05D004412 ORTHO05D005316 6.9e-51 204.5 179 55.3
Medtr8g058563 Medicago truncatula HOM05D004412 ORTHO05D005316 6.9e-51 204.5 179 55.3
Lsat_1_v5_gn_9_901 Lactuca sativa HOM05D004412 ORTHO05D005316 9.0e-51 204.1 182 54.9
Lj2C1191G7 Lonicera japonica HOM05D004412 ORTHO05D005316 9.0e-51 204.1 179 53.6
PSO302G0109 Papaver somniferum HOM05D004412 ORTHO05D005316 1.2e-50 203.8 179 54.2
Os01g0356500 Oryza sativa ssp. japonica HOM05D004412 ORTHO05D005316 1.5e-50 203.4 179 52.5
BcaC07g36986 Brassica carinata HOM05D004412 ORTHO05D005316 2.0e-50 203.0 179 54.7
BcaC07g36988 Brassica carinata HOM05D004412 ORTHO05D005316 2.0e-50 203.0 179 54.7
Dinv19708 Davidia involucrata HOM05D004412 ORTHO05D005316 2.6e-50 202.6 179 55.9
Sp1g01880 Schrenkiella parvula HOM05D004412 ORTHO05D005316 2.6e-50 202.6 184 52.2
AT1G02880 Arabidopsis thaliana HOM05D004412 ORTHO05D005316 3.4e-50 202.2 179 53.6
AUR62033109 Chenopodium quinoa HOM05D000147 ORTHO05D001254 3.4e-50 202.2 179 54.7
PSO210G7114 Papaver somniferum HOM05D004412 ORTHO05D005316 3.4e-50 202.2 179 53.6
Sed0017881 Sechium edule HOM05D004412 ORTHO05D005316 3.4e-50 202.2 176 54.5
PSO782G2310 Papaver somniferum HOM05D004412 ORTHO05D005316 4.5e-50 201.8 179 52.5
Glyma.19G210300 Glycine max HOM05D004412 ORTHO05D005316 5.8e-50 201.4 194 52.6
MSTRG.18165 Avicennia marina HOM05D004412 ORTHO05D005316 7.6e-50 201.1 179 58.1
C08p00300 Brassica napus HOM05D004412 ORTHO05D005316 7.6e-50 201.1 179 54.2
SalBow3G3296 Salvia bowleyana HOM05D002199 ORTHO05D007829 7.6e-50 201.1 183 54.6
AL1G12300 Arabidopsis lyrata HOM05D004412 ORTHO05D005316 9.9e-50 200.7 179 54.2
Ciclev10021279m.g Citrus clementina HOM05D004412 ORTHO05D005316 9.9e-50 200.7 191 52.9
DCAR_005799 Daucus carota HOM05D004412 ORTHO05D005316 9.9e-50 200.7 179 54.2
Lalb_Chr18g0047081 Lupinus albus HOM05D004412 ORTHO05D005316 1.3e-49 200.3 179 53.6
CAN.G339.23 Capsicum annuum HOM05D004412 ORTHO05D005316 1.7e-49 199.9 179 57.5
AT2G44750 Arabidopsis thaliana HOM05D004412 ORTHO05D005316 2.2e-49 199.5 179 53.6
AUR62008659 Chenopodium quinoa HOM05D004412 ORTHO05D005316 2.2e-49 199.5 179 53.6
Cc04_g10720 Coffea canephora HOM05D004412 ORTHO05D005316 2.2e-49 199.5 179 54.7
Zm00001eb285500 Zea mays HOM05D004412 ORTHO05D005316 2.2e-49 199.5 163 58.3
BolC8t46831H Brassica oleracea HOM05D004412 ORTHO05D005316 2.9e-49 199.1 176 54.5
MELO3C016014.2 Cucumis melo HOM05D004412 ORTHO05D005316 3.8e-49 198.7 179 54.2
CsaV3_7G029140 Cucumis sativus L. HOM05D004412 ORTHO05D005316 4.9e-49 198.4 176 55.7
Thhalv10008492m.g Eutrema salsugineum HOM05D004412 ORTHO05D005316 4.9e-49 198.4 184 52.7
HanXRQChr10g0284561 Helianthus annuus HOM05D004412 ORTHO05D005316 6.4e-49 198.0 182 53.3
Migut.D00201 Erythranthe guttata HOM05D004412 ORTHO05D005316 8.4e-49 197.6 179 56.4
Oeu032104.1 Olea europaea HOM05D004412 ORTHO05D005316 1.9e-48 196.4 184 53.3
PSO832G3509 Papaver somniferum HOM05D004412 ORTHO05D005316 2.4e-48 196.1 179 53.1
CBR_g34735 Chara braunii HOM05D004412 ORTHO05D000002 3.2e-48 195.7 183 54.1
Pp3c4_27720 Physcomitrium patens HOM05D004412 ORTHO05D005316 3.2e-48 195.7 180 52.2
Zm00001eb131550 Zea mays HOM05D004412 ORTHO05D005316 1.6e-47 193.4 194 48.5
Sopen09g029800 Solanum pennellii HOM05D004412 ORTHO05D005316 3.5e-47 192.2 179 55.3
Dinv33040 Davidia involucrata HOM05D004412 ORTHO05D005316 4.6e-47 191.8 169 55.6
PGSC0003DMG401011372 Solanum tuberosum HOM05D004412 ORTHO05D005316 6.0e-47 191.4 179 54.7
MBI19_g12143_MAGBIO Magnolia biondii HOM05D004412 ORTHO05D005316 1.3e-46 190.3 159 54.1
SMO119G0015 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 1.3e-46 190.3 175 53.7
Solyc09g074970.3 Solanum lycopersicum HOM05D004412 ORTHO05D005316 3.0e-46 189.1 181 55.2
SEGI_10498 Sequoiadendron giganteum HOM05D004412 ORTHO05D005316 1.9e-45 186.4 155 54.8
EL10Ac2g03462 Beta vulgaris HOM05D004412 ORTHO05D005316 2.5e-45 186.0 179 52.5
Peaxi162Scf00001g04911 Petunia axillaris HOM05D004412 ORTHO05D005316 3.3e-45 185.7 185 53.0
CSS0010827 Camellia sinensis var. sinensis HOM05D004412 ORTHO05D005316 2.8e-44 182.6 157 56.1
BraA08t35652Z Brassica rapa HOM05D004412 ORTHO05D005316 7.6e-42 174.5 179 50.3
Sabra02G0153500 Salix brachista HOM05D004412 ORTHO05D005316 3.8e-41 172.2 180 47.8
SGA_v2.0_scaffold1G00376 Striga asiatica HOM05D004412 ORTHO05D005316 1.4e-40 170.2 180 47.8
SGA_v2.0_scaffold2G01402 Striga asiatica HOM05D002199 ORTHO05D007829 9.3e-40 167.5 180 48.9
Actinidia32228 Actinidia chinensis HOM05D004412 ORTHO05D005316 2.7e-39 166.0 169 47.9
QL12p026683 Quercus lobata HOM05D004412 ORTHO05D005316 6.0e-39 164.9 155 52.3
Mapoly0113s0040 Marchantia polymorpha HOM05D004412 ORTHO05D005316 2.3e-38 162.9 178 46.6
PGR119G0381 Punica granatum HOM05D004412 ORTHO05D005316 1.1e-37 160.6 142 54.2
SHI29035 Sapria himalayana HOM05D004412 ORTHO05D005316 5.3e-35 151.8 216 38.9
CARHR002230 Cardamine hirsuta HOM05D004412 ORTHO05D005316 1.5e-34 150.2 179 44.7
Cre01.g040050 Chlamydomonas reinhardtii HOM05D004412 ORTHO05D005316 2.9e-33 146.0 187 42.2
Nitab4.5_0005515g0010 Nicotiana tabacum HOM05D004412 ORTHO05D005316 1.4e-32 143.7 284 34.9
SMO304G0108 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 1.6e-31 140.2 105 73.3
MCO04G072 Micromonas commoda HOM05D004412 ORTHO05D005316 5.7e-29 131.7 197 35.5
unitig_0.g656 Utricularia gibba HOM05D004412 ORTHO05D005316 4.2e-24 115.5 103 55.3
Nitab4.5_0001756g0260 Nicotiana tabacum HOM05D004412 ORTHO05D005316 1.6e-23 113.6 103 57.3
SMO304G0017 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 2.1e-23 113.2 92 65.2
Cc01_g20710 Coffea canephora HOM05D004412 ORTHO05D005316 2.7e-23 112.8 99 55.6
PRCOL_00001679 Prasinoderma coloniale HOM05D004412 ORTHO05D005316 7.9e-23 111.3 187 35.8
Nitab4.5_0002469g0010 Nicotiana tabacum HOM05D004412 ORTHO05D005316 5.0e-17 92.0 190 34.7
MD11G1034700 Malus domestica HOM05D004412 ORTHO05D005316 4.7e-15 85.5 172 37.2
FAN16G1537 Fragaria x ananassa HOM05D004412 ORTHO05D005316 7.0e-11 71.6 57 56.1
MD02G1044100 Malus domestica HOM05D004412 ORTHO05D005316 5.9e-10 68.6 48 64.6
MD06G1023300 Malus domestica HOM05D004412 ORTHO05D005316 5.9e-10 68.6 48 64.6
Lj1g0003703 Lotus japonicus HOM05D004412 ORTHO05D005316 1.0e-09 67.8 56 48.2
Carub.0033s0005 Capsella rubella HOM05D004412 ORTHO05D005316 2.9e-09 66.2 55 52.7
Nitab4.5_0001756g0180 Nicotiana tabacum HOM05D004412 ORTHO05D005316 3.8e-09 65.9 50 54.0
BcaC05g24583 Brassica carinata HOM05D004412 ORTHO05D005316 5.5e-08 62.0 50 52.0
Nitab4.5_0001756g0250 Nicotiana tabacum HOM05D004412 ORTHO05D005316 7.2e-08 61.6 50 50.0
SMO304G0077 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 1.8e-06 57.0 43 72.1
Nitab4.5_0000619g0170 Nicotiana tabacum HOM05D004412 ORTHO05D005316 5.2e-06 55.5 50 52.0


User provided reference genes

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