Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO304G0024 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 4.9e-105 384.4 185 100.0
SMO164G0207 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 4.5e-42 175.3 154 64.9
SMO164G0195 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 8.8e-38 161.0 171 57.3
SMO304G0030 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 1.6e-31 140.2 161 51.6
SMO271G0026 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 6.1e-31 138.3 165 55.8
Mapoly0002s0041 Marchantia polymorpha HOM05D003767 ORTHO05D004507 2.9e-17 92.8 180 38.3
Os12g0263000 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 9.4e-16 87.8 162 38.3
Aa31LG11G9150 Aethionema arabicum HOM05D003767 ORTHO05D004507 1.6e-15 87.0 164 38.4
TAR365G0614 Trochodendron aralioides HOM05D003767 ORTHO05D004507 1.6e-15 87.0 164 39.0
Os12g0528400 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 2.1e-15 86.7 159 40.3
Zm00001eb137820 Zea mays HOM05D003767 ORTHO05D004507 6.1e-15 85.1 158 40.5
Os11g0642800 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 1.0e-14 84.3 159 38.4
Lj1g0009738 Lotus japonicus HOM05D003767 ORTHO05D004507 1.4e-14 84.0 151 40.4
Zm00001eb115490 Zea mays HOM05D003767 ORTHO05D004507 1.4e-14 84.0 160 36.9
BcaNung04364 Brassica carinata HOM05D003767 ORTHO05D004507 2.3e-14 83.2 164 38.4
CiPaw.08G167300 Carya illinoinensis HOM05D003767 ORTHO05D004507 2.3e-14 83.2 164 36.6
AUR62000859 Chenopodium quinoa HOM05D003767 ORTHO05D004507 4.0e-14 82.4 164 38.4
Phvul.006G094500 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 4.0e-14 82.4 161 37.3
VMungo0540G0577 Vigna mungo HOM05D003767 ORTHO05D004507 4.0e-14 82.4 161 37.3
Glyma.19G237700 Glycine max HOM05D003767 ORTHO05D004507 5.2e-14 82.0 161 37.3
Manes.08G123500 Manihot esculenta HOM05D003767 ORTHO05D004507 5.2e-14 82.0 164 36.6
Lj1g0000488 Lotus japonicus HOM05D003767 ORTHO05D004507 6.8e-14 81.6 172 34.9
Medtr7g113890 Medicago truncatula HOM05D003767 ORTHO05D004507 6.8e-14 81.6 167 37.1
BcaNung02467 Brassica carinata HOM05D003767 ORTHO05D004507 8.8e-14 81.3 164 37.8
A06p37610 Brassica napus HOM05D003767 ORTHO05D004507 8.8e-14 81.3 164 37.8
C07p40700 Brassica napus HOM05D003767 ORTHO05D004507 8.8e-14 81.3 164 37.8
BolC7t44598H Brassica oleracea HOM05D003767 ORTHO05D004507 8.8e-14 81.3 164 37.8
BraA06t26680Z Brassica rapa HOM05D003767 ORTHO05D004507 8.8e-14 81.3 164 37.8
CANSAT54G0870 Cannabis sativa HOM05D003767 ORTHO05D004507 8.8e-14 81.3 162 36.4
CARHR185970 Cardamine hirsuta HOM05D003767 ORTHO05D004507 8.8e-14 81.3 164 37.8
PSO832G1867 Papaver somniferum HOM05D003767 ORTHO05D004507 1.2e-13 80.9 164 35.4
Sp2g20600 Schrenkiella parvula HOM05D003767 ORTHO05D004507 1.5e-13 80.5 164 37.8
C09p05700 Brassica napus HOM05D003767 ORTHO05D004507 2.0e-13 80.1 161 37.9
Carub.0006s2517 Capsella rubella HOM05D003767 ORTHO05D004507 2.0e-13 80.1 164 34.8
FAN05G2944 Fragaria x ananassa HOM05D003767 ORTHO05D004507 2.0e-13 80.1 162 34.6
Medtr7g113880 Medicago truncatula HOM05D003767 ORTHO05D004507 2.0e-13 80.1 188 33.5
BcaC04g23683 Brassica carinata HOM05D003767 ORTHO05D004507 2.6e-13 79.7 161 37.9
BolC9t53499H Brassica oleracea HOM05D003767 ORTHO05D004507 2.6e-13 79.7 161 37.9
BraA09t36163Z Brassica rapa HOM05D003767 ORTHO05D004507 2.6e-13 79.7 161 37.9
Glyma.03G240600 Glycine max HOM05D003767 ORTHO05D004507 2.6e-13 79.7 161 37.3
Nn1g08367 Nelumbo nucifera HOM05D003767 ORTHO05D004507 2.6e-13 79.7 164 37.8
Sc09g0003380 Simmondsia chinensis HOM05D003767 ORTHO05D004507 2.6e-13 79.7 164 36.6
A09p05240 Brassica napus HOM05D003767 ORTHO05D004507 3.4e-13 79.3 161 37.9
Thhalv10003956m.g Eutrema salsugineum HOM05D003767 ORTHO05D004507 3.4e-13 79.3 164 37.2
TPR.G33164 Trifolium pratense HOM05D003767 ORTHO05D004507 3.4e-13 79.3 159 37.7
Aqoxy2G03198 Aquilegia oxysepala HOM05D003767 ORTHO05D004507 4.4e-13 79.0 162 34.6
Duzib147G0043 Durio zibethinus HOM05D003767 ORTHO05D004507 4.4e-13 79.0 162 39.5
ECA238G1346 Erigeron canadensis HOM05D003767 ORTHO05D004507 4.4e-13 79.0 161 35.4
BcaB04g19665 Brassica carinata HOM05D003767 ORTHO05D004507 5.7e-13 78.6 161 37.9
Ca_09375_v3 Cicer arietinum L. HOM05D003767 ORTHO05D004507 5.7e-13 78.6 151 37.1
MELO3C015345.2 Cucumis melo HOM05D003767 ORTHO05D004507 7.5e-13 78.2 162 36.4
Gorai.003G066300 Gossypium raimondii HOM05D003767 ORTHO05D004507 7.5e-13 78.2 164 38.4
Manes.09G162900 Manihot esculenta HOM05D003767 ORTHO05D004507 7.5e-13 78.2 131 40.5
Sabra05G0038000 Salix brachista HOM05D003767 ORTHO05D004507 7.5e-13 78.2 161 36.0
THA.LOC104821704 Tarenaya hassleriana HOM05D003767 ORTHO05D004507 7.5e-13 78.2 164 36.6
Thecc.02G212900 Theobroma cacao HOM05D003767 ORTHO05D004507 7.5e-13 78.2 156 37.8
unitig_26.g9470 Utricularia gibba HOM05D003767 ORTHO05D004507 7.5e-13 78.2 162 35.8
EL10Ac4g09299 Beta vulgaris HOM05D003767 ORTHO05D004507 9.8e-13 77.8 164 35.4
AUR62005115 Chenopodium quinoa HOM05D003767 ORTHO05D004507 9.8e-13 77.8 162 35.8
Ciclev10000728m.g Citrus clementina HOM05D003767 ORTHO05D004507 9.8e-13 77.8 164 36.0
HanXRQChr10g0295061 Helianthus annuus HOM05D003767 ORTHO05D004507 9.8e-13 77.8 162 35.8
Sed0026847 Sechium edule HOM05D003767 ORTHO05D004507 9.8e-13 77.8 162 37.0
Ah.06g190170 Amaranthus hybridus HOM05D003767 ORTHO05D004507 1.3e-12 77.4 162 35.2
arahy.Tifrunner.gnm1.ann1.1T3PYK Arachis hypogaea HOM05D003767 ORTHO05D004507 1.3e-12 77.4 162 36.4
arahy.Tifrunner.gnm1.ann1.RYM43V Arachis hypogaea HOM05D003767 ORTHO05D004507 1.3e-12 77.4 162 36.4
Cfa006539 Carpinus fangiana HOM05D003767 ORTHO05D004507 1.3e-12 77.4 164 36.0
Glyma.19G237900 Glycine max HOM05D003767 ORTHO05D004507 1.3e-12 77.4 161 36.6
Lsat_1_v5_gn_2_64341 Lactuca sativa HOM05D003767 ORTHO05D004507 1.3e-12 77.4 163 36.2
Lalb_Chr18g0045501 Lupinus albus HOM05D003767 ORTHO05D004507 1.3e-12 77.4 172 34.3
PSO210G1178 Papaver somniferum HOM05D003767 ORTHO05D004507 1.3e-12 77.4 164 34.1
Atru.chr2.496 Acer truncatum HOM05D003767 ORTHO05D004507 1.7e-12 77.0 163 36.8
AL6G39640 Arabidopsis lyrata HOM05D003767 ORTHO05D004507 1.7e-12 77.0 164 35.4
FvH4_6g05260 Fragaria vesca HOM05D003767 ORTHO05D004507 1.7e-12 77.0 164 33.5
FAN14G0860 Fragaria x ananassa HOM05D003767 ORTHO05D004507 1.7e-12 77.0 164 33.5
FAN14G3644 Fragaria x ananassa HOM05D003767 ORTHO05D004507 1.7e-12 77.0 164 33.5
Hma1.2p1_0666F.1_g199390 Hydrangea macrophylla HOM05D003767 ORTHO05D004507 1.7e-12 77.0 162 36.4
ECA238G2357 Erigeron canadensis HOM05D003767 ORTHO05D004507 2.2e-12 76.6 161 36.0
Phvul.006G094600 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 2.2e-12 76.6 161 36.6
COL.COLO4_12128 Corchorus olitorius HOM05D003767 ORTHO05D004507 2.8e-12 76.3 178 34.3
Gohir.A11G224810 Gossypium hirsutum HOM05D003767 ORTHO05D004507 2.8e-12 76.3 164 37.8
RcHm_v2.0_Chr3g0453991 Rosa chinensis HOM05D003767 ORTHO05D004507 3.7e-12 75.9 162 32.1
Ca_09376_v3 Cicer arietinum L. HOM05D003767 ORTHO05D004507 4.8e-12 75.5 153 39.2
Oeu027914.1 Olea europaea HOM05D003767 ORTHO05D004507 4.8e-12 75.5 156 37.2
SalBow6G1775 Salvia bowleyana HOM05D003767 ORTHO05D003551 4.8e-12 75.5 154 37.0
TPR.G33204 Trifolium pratense HOM05D003767 ORTHO05D004507 4.8e-12 75.5 161 35.4
Aqoxy5G00559 Aquilegia oxysepala HOM05D003767 ORTHO05D004507 6.3e-12 75.1 163 36.8
Phvul.006G094700 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 6.3e-12 75.1 169 34.9
Psat3g009920 Pisum sativum HOM05D003767 ORTHO05D004507 6.3e-12 75.1 160 35.6
Prupe.6G331000 Prunus persica HOM05D003767 ORTHO05D004507 6.3e-12 75.1 164 34.1
Cc02_g32590 Coffea canephora HOM05D003767 ORTHO05D004507 8.3e-12 74.7 159 37.7
Glyma.19G237800 Glycine max HOM05D003767 ORTHO05D004507 8.3e-12 74.7 172 35.5
Gohir.D11G232600 Gossypium hirsutum HOM05D003767 ORTHO05D004507 8.3e-12 74.7 164 37.8
Nitab4.5_0004940g0030 Nicotiana tabacum HOM05D003767 ORTHO05D004507 8.3e-12 74.7 163 36.8
Potri.005G038100 Populus trichocarpa HOM05D003767 ORTHO05D004507 8.3e-12 74.7 161 35.4
HPP92_001826 Vanilla planifolia HOM05D003767 ORTHO05D004507 8.3e-12 74.7 154 37.0
AT5G27380 Arabidopsis thaliana HOM05D003767 ORTHO05D004507 1.1e-11 74.3 159 35.8
ATR0626G007 Amborella trichopoda HOM05D003767 ORTHO05D004507 1.8e-11 73.6 151 35.8
Nitab4.5_0001423g0150 Nicotiana tabacum HOM05D003767 ORTHO05D004507 1.8e-11 73.6 163 36.2
Solyc01g098610.4 Solanum lycopersicum HOM05D003767 ORTHO05D004507 1.8e-11 73.6 162 35.8
PGSC0003DMG400028599 Solanum tuberosum HOM05D003767 ORTHO05D004507 1.8e-11 73.6 164 36.0
Lalb_Chr15g0077051 Lupinus albus HOM05D003767 ORTHO05D004507 2.4e-11 73.2 150 38.7
Potri.013G026800 Populus trichocarpa HOM05D003767 ORTHO05D004507 2.4e-11 73.2 161 34.2
CAN.G1134.12 Capsicum annuum HOM05D003767 ORTHO05D004507 3.1e-11 72.8 164 34.8
Migut.F01584 Erythranthe guttata HOM05D003767 ORTHO05D004507 3.1e-11 72.8 154 36.4
Eucgr.H04452 Eucalyptus grandis HOM05D003767 ORTHO05D004507 3.1e-11 72.8 164 36.6
Sopen01g042160 Solanum pennellii HOM05D003767 ORTHO05D004507 3.1e-11 72.8 162 35.8
DCAR_002932 Daucus carota HOM05D003767 ORTHO05D004507 4.1e-11 72.4 129 35.7
QL03p004251 Quercus lobata HOM05D003767 ORTHO05D004507 4.1e-11 72.4 152 34.9
GSVIVG01022056001 Vitis vinifera HOM05D003767 ORTHO05D004507 4.1e-11 72.4 163 36.2
PGR031G1040 Punica granatum HOM05D003767 ORTHO05D004507 5.4e-11 72.0 164 33.5
Lj9A681G36 Lonicera japonica HOM05D003767 ORTHO05D004507 7.0e-11 71.6 156 36.5
Peaxi162Scf00434g00336 Petunia axillaris HOM05D003767 ORTHO05D004507 7.0e-11 71.6 164 36.0
Psat3g009360 Pisum sativum HOM05D003767 ORTHO05D004507 7.0e-11 71.6 147 36.1
vmacro05036 Vaccinium macrocarpon HOM05D003767 ORTHO05D004507 7.0e-11 71.6 170 34.7
MD04G1210100 Malus domestica HOM05D003767 ORTHO05D004507 9.1e-11 71.2 162 34.0
Cpa.g.sc48.5 Carica papaya HOM05D003767 ORTHO05D004507 1.2e-10 70.9 172 33.7
DCAR_029443 Daucus carota HOM05D003767 ORTHO05D004507 1.2e-10 70.9 129 36.4
HanXRQChr14g0446461 Helianthus annuus HOM05D003767 ORTHO05D004507 1.2e-10 70.9 156 35.9
Rhsim07G0179200 Rhododendron simsii HOM05D003767 ORTHO05D004507 1.6e-10 70.5 163 34.4
RhsimUnG0080300 Rhododendron simsii HOM05D003767 ORTHO05D004507 1.6e-10 70.5 163 34.4
DCAR_005538 Daucus carota HOM05D003767 ORTHO05D004507 2.0e-10 70.1 129 35.7
FAN09G3025 Fragaria x ananassa HOM05D003767 ORTHO05D004507 2.0e-10 70.1 157 31.8
TWI56G0745 Tripterygium wilfordii HOM05D003767 ORTHO05D004507 2.0e-10 70.1 163 34.4
Hund07038 Selenicereus undatus HOM05D003767 ORTHO05D004507 2.7e-10 69.7 192 31.2
Cre17.g708800 Chlamydomonas reinhardtii HOM05D003767 ORTHO05D004507 4.5e-10 68.9 171 35.1
SGA_v2.0_scaffold13G06464 Striga asiatica HOM05D003767 ORTHO05D004507 5.9e-10 68.6 152 36.2
Pp3c1_36280 Physcomitrium patens HOM05D003767 ORTHO05D004507 1.0e-09 67.8 162 35.8
CSS0007130 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 2.3e-09 66.6 172 33.1
VMungo0540G2084 Vigna mungo HOM05D003767 ORTHO05D004507 5.0e-09 65.5 149 35.6
MSTRG.8108 Avicennia marina HOM05D003767 ORTHO05D004507 8.6e-09 64.7 154 33.8
FAN05G1904 Fragaria x ananassa HOM05D003767 ORTHO05D004507 8.6e-09 64.7 159 31.4
MD12G1224500 Malus domestica HOM05D003767 ORTHO05D004507 3.2e-08 62.8 155 31.6
CSS0020414 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 4.2e-08 62.4 153 35.3
Actinidia23606 Actinidia chinensis HOM05D003767 ORTHO05D004507 9.5e-08 61.2 163 31.9
CSS0005723 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 9.5e-08 61.2 154 33.8
PRCOL_00004575 Prasinoderma coloniale HOM05D003767 ORTHO05D004507 4.7e-07 58.9 174 30.5
CDE02G2107 Ceratophyllum demersum HOM05D000488 ORTHO05D000347 2.3e-06 56.6 57 52.6


User provided reference genes

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