Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO275G0053 Selaginella moellendorffii HOM05D005234 ORTHO05D006583 8.9e-136 486.9 237 100.0
SMO094G0001 Selaginella moellendorffii HOM05D005234 ORTHO05D006583 7.6e-103 377.5 231 83.1
SMO367G0389 Selaginella moellendorffii HOM05D005234 ORTHO05D006583 4.5e-95 351.7 217 81.6
SMO367G1158 Selaginella moellendorffii HOM05D005234 ORTHO05D006583 1.5e-77 293.5 213 72.3
SMO367G0666 Selaginella moellendorffii HOM05D005234 ORTHO05D006583 2.2e-70 269.6 190 75.3
SMO367G1094 Selaginella moellendorffii HOM05D005234 ORTHO05D006583 2.9e-70 269.2 202 70.8
SMO367G0043 Selaginella moellendorffii HOM05D005234 ORTHO05D006583 7.8e-47 191.4 192 57.8
Mapoly0068s0008 Marchantia polymorpha HOM05D005234 ORTHO05D006583 3.5e-39 166.0 218 41.7
SMO141G0013 Selaginella moellendorffii HOM05D005234 ORTHO05D006583 2.1e-36 156.8 218 40.4
Pp3c19_10210 Physcomitrium patens HOM05D005234 ORTHO05D006583 1.2e-34 151.0 218 36.7
Pp3c3_27330 Physcomitrium patens HOM05D005234 ORTHO05D006583 4.9e-33 145.6 218 38.1
SMO367G1161 Selaginella moellendorffii HOM05D005234 ORTHO05D006583 4.1e-32 142.5 222 38.7
RcHm_v2.0_Chr1g0364981 Rosa chinensis HOM05D005234 ORTHO05D006583 1.6e-31 140.6 249 32.9
ClCG09G020200 Citrullus lanatus HOM05D005234 ORTHO05D006583 2.7e-31 139.8 217 35.0
Cc02_g08680 Coffea canephora HOM05D005234 ORTHO05D006583 3.5e-31 139.4 217 35.9
SMO367G0191 Selaginella moellendorffii HOM05D005234 ORTHO05D006583 1.3e-30 137.5 217 36.4
HanXRQChr14g0460751 Helianthus annuus HOM05D005234 ORTHO05D006583 3.9e-30 136.0 220 34.1
SMO348G0083 Selaginella moellendorffii HOM05D005234 ORTHO05D006583 3.9e-30 136.0 226 34.1
CsaV3_5G026250 Cucumis sativus L. HOM05D005234 ORTHO05D006583 5.1e-30 135.6 217 35.9
TAR623G0173 Trochodendron aralioides HOM05D005234 ORTHO05D006583 5.1e-30 135.6 217 36.4
FvH4_7g20720 Fragaria vesca HOM05D005234 ORTHO05D006583 6.6e-30 135.2 217 33.2
TWI63G0851 Tripterygium wilfordii HOM05D005234 ORTHO05D006583 1.9e-29 133.7 217 34.1
Eucgr.J01148 Eucalyptus grandis HOM05D005234 ORTHO05D006583 2.5e-29 133.3 215 35.3
Lalb_Chr06g0164091 Lupinus albus HOM05D005234 ORTHO05D006583 2.5e-29 133.3 217 35.0
MELO3C025470.2 Cucumis melo HOM05D005234 ORTHO05D006583 4.3e-29 132.5 223 35.4
Potri.008G047400 Populus trichocarpa HOM05D005234 ORTHO05D006583 9.5e-29 131.3 217 34.1
Prupe.2G224300 Prunus persica HOM05D005234 ORTHO05D006583 1.2e-28 131.0 217 35.5
Sed0019162 Sechium edule HOM05D005234 ORTHO05D006583 3.6e-28 129.4 240 32.5
TPR.G10401 Trifolium pratense HOM05D005234 ORTHO05D006583 4.7e-28 129.0 215 34.9
Sabra08G0033600 Salix brachista HOM05D005234 ORTHO05D006583 6.2e-28 128.6 232 32.3
COL.COLO4_05802 Corchorus olitorius HOM05D005234 ORTHO05D006583 1.8e-27 127.1 217 33.6
Lsat_1_v5_gn_2_115220 Lactuca sativa HOM05D005234 ORTHO05D006583 4.0e-27 125.9 220 32.7
MD01G1116500 Malus domestica HOM05D005234 ORTHO05D006583 5.2e-27 125.6 215 34.0
Thecc.10G063300 Theobroma cacao HOM05D005234 ORTHO05D006583 5.2e-27 125.6 217 33.2
Dinv31388 Davidia involucrata HOM05D005234 ORTHO05D006583 6.8e-27 125.2 217 34.1
PGR044G0090 Punica granatum HOM05D005234 ORTHO05D006583 8.9e-27 124.8 217 33.2
Actinidia38226 Actinidia chinensis HOM05D005234 ORTHO05D006583 1.2e-26 124.4 217 33.6
Medtr1g115980 Medicago truncatula HOM05D005234 ORTHO05D006583 1.2e-26 124.4 215 33.0
Glyma.10G292500 Glycine max HOM05D005234 ORTHO05D006583 1.5e-26 124.0 247 31.2
Cpa.g.sc1.299 Carica papaya HOM05D005234 ORTHO05D006583 2.0e-26 123.6 220 31.4
AL5G36200 Arabidopsis lyrata HOM05D005234 ORTHO05D006583 2.6e-26 123.2 218 34.9
Phvul.007G007800 Phaseolus vulgaris HOM05D005234 ORTHO05D006583 2.6e-26 123.2 217 33.2
SMO180G0001 Selaginella moellendorffii HOM05D005234 ORTHO05D006583 2.6e-26 123.2 240 35.0
CiPaw.01G279400 Carya illinoinensis HOM05D005234 ORTHO05D006583 3.4e-26 122.9 218 31.7
Hund06032 Selenicereus undatus HOM05D005234 ORTHO05D006583 3.4e-26 122.9 217 31.8
Nn2g10556 Nelumbo nucifera HOM05D005234 ORTHO05D006583 4.4e-26 122.5 217 31.8
Migut.A00396 Erythranthe guttata HOM05D005234 ORTHO05D006583 5.8e-26 122.1 217 31.8
FAN06G4140 Fragaria x ananassa HOM05D005234 ORTHO05D006583 5.8e-26 122.1 217 32.7
ECA238G2043 Erigeron canadensis HOM05D005234 ORTHO05D006583 7.6e-26 121.7 218 31.2
BcaB01g00128 Brassica carinata HOM05D005234 ORTHO05D006583 9.9e-26 121.3 218 32.6
AT3G55080 Arabidopsis thaliana HOM05D005234 ORTHO05D006583 1.3e-25 120.9 218 33.5
Cfa001561 Carpinus fangiana HOM05D005234 ORTHO05D006583 1.3e-25 120.9 217 33.2
Gohir.D04G060251 Gossypium hirsutum HOM05D005234 ORTHO05D006583 2.2e-25 120.2 217 34.1
HPP92_021203 Vanilla planifolia HOM05D005234 ORTHO05D006583 2.9e-25 119.8 217 32.7
Thhalv10010346m.g Eutrema salsugineum HOM05D005234 ORTHO05D006583 4.9e-25 119.0 218 33.0
Gohir.A05G352700 Gossypium hirsutum HOM05D005234 ORTHO05D006583 4.9e-25 119.0 217 33.6
A09p48110 Brassica napus HOM05D005234 ORTHO05D006583 6.4e-25 118.6 218 32.6
THA.LOC104809996 Tarenaya hassleriana HOM05D005234 ORTHO05D006583 6.4e-25 118.6 218 32.1
Carub.0005s2171 Capsella rubella HOM05D005234 ORTHO05D006583 1.1e-24 117.9 217 32.7
Aa31LG10G10060 Aethionema arabicum HOM05D005234 ORTHO05D006583 1.4e-24 117.5 221 33.5
BcaC07g39833 Brassica carinata HOM05D005234 ORTHO05D006583 2.4e-24 116.7 218 31.7
VMungo0720G1519 Vigna mungo HOM05D005234 ORTHO05D006583 3.2e-24 116.3 217 31.3
Sp5g07340 Schrenkiella parvula HOM05D005234 ORTHO05D006583 4.1e-24 115.9 218 32.1
BolC8t50657H Brassica oleracea HOM05D005234 ORTHO05D006583 5.4e-24 115.5 218 31.7
QL08p057492 Quercus lobata HOM05D005234 ORTHO05D006583 5.4e-24 115.5 217 31.8
unitig_26.g8857 Utricularia gibba HOM05D005234 ORTHO05D006583 5.4e-24 115.5 218 29.4
Psat6g238640 Pisum sativum HOM05D005234 ORTHO05D006583 7.1e-24 115.2 159 39.0
SGA_v2.0_scaffold193G40685 Striga asiatica HOM05D005234 ORTHO05D006583 7.1e-24 115.2 218 32.6
C08p30350 Brassica napus HOM05D005234 ORTHO05D006583 1.2e-23 114.4 218 31.2
SalBow4G2780 Salvia bowleyana HOM05D005234 ORTHO05D006583 1.6e-23 114.0 218 32.1
GSVIVG01032632001 Vitis vinifera HOM05D005234 ORTHO05D006583 2.1e-23 113.6 247 29.1
BraA09t40265Z Brassica rapa HOM05D005234 ORTHO05D006583 2.7e-23 113.2 227 31.7
CDE04G1829 Ceratophyllum demersum HOM05D005234 ORTHO05D006583 1.3e-22 110.9 217 32.7
FAN06G4823 Fragaria x ananassa HOM05D005234 ORTHO05D006583 5.1e-22 109.0 261 28.7
Os01g0976450 Oryza sativa ssp. japonica HOM05D005234 ORTHO05D006583 1.1e-21 107.8 217 30.4
CANSAT56G3438 Cannabis sativa HOM05D005234 ORTHO05D006583 1.9e-21 107.1 157 35.0
Nitab4.5_0000271g0220 Nicotiana tabacum HOM05D005234 ORTHO05D006583 1.9e-21 107.1 218 31.2
FAN01G2148 Fragaria x ananassa HOM05D005234 ORTHO05D006583 1.1e-19 101.3 283 25.8
FAN01G2697 Fragaria x ananassa HOM05D005234 ORTHO05D006583 1.1e-19 101.3 283 25.8
A09p32550 Brassica napus HOM05D005234 ORTHO05D006583 1.8e-19 100.5 223 29.6
Peaxi162Scf00629g00122 Petunia axillaris HOM05D005234 ORTHO05D006583 1.8e-19 100.5 219 28.3
arahy.Tifrunner.gnm1.ann1.E1ZVHS Arachis hypogaea HOM05D005234 ORTHO05D006583 2.4e-19 100.1 197 31.5
Gorai.012G067000 Gossypium raimondii HOM05D005234 ORTHO05D006583 2.6e-18 96.7 217 31.3
vmacro07108 Vaccinium macrocarpon HOM05D005234 ORTHO05D006583 3.4e-18 96.3 196 31.6
arahy.Tifrunner.gnm1.ann1.IBY72V Arachis hypogaea HOM05D005234 ORTHO05D006583 5.8e-18 95.5 232 28.0
SEGI_20375 Sequoiadendron giganteum HOM05D005234 ORTHO05D006583 2.2e-17 93.6 137 37.2
Atru.chr12.596 Acer truncatum HOM05D005234 ORTHO05D006583 2.9e-17 93.2 143 35.7
Oeu025610.1 Olea europaea HOM05D005234 ORTHO05D006583 3.8e-17 92.8 163 31.3
SMO340G0223 Selaginella moellendorffii HOM05D005234 ORTHO05D006583 8.4e-17 91.7 237 29.1
Manes.07G106500 Manihot esculenta HOM05D005234 ORTHO05D006583 1.4e-16 90.9 142 33.1
Duzib114G0593 Durio zibethinus HOM05D005234 ORTHO05D006583 4.6e-15 85.9 218 28.0
Phvul.006G005700 Phaseolus vulgaris HOM05D004224 ORTHO05D006437 1.0e-14 84.7 225 28.0
Thhalv10020552m.g Eutrema salsugineum HOM05D004224 ORTHO05D006437 1.3e-14 84.3 225 30.2
BcaB04g21275 Brassica carinata HOM05D004224 ORTHO05D006437 3.9e-14 82.8 225 29.8
BolC1t05538H Brassica oleracea HOM05D004224 ORTHO05D006437 3.9e-14 82.8 225 29.8
Sp3g06610 Schrenkiella parvula HOM05D004224 ORTHO05D006437 3.9e-14 82.8 225 29.8
AL3G19030 Arabidopsis lyrata HOM05D004224 ORTHO05D006437 5.1e-14 82.4 225 29.8
Psat5g104720 Pisum sativum HOM05D004224 ORTHO05D006437 5.1e-14 82.4 264 26.9
Aa31LG5G18250 Aethionema arabicum HOM05D004224 ORTHO05D006437 8.7e-14 81.6 225 29.3
Glyma.13G010500 Glycine max HOM05D004224 ORTHO05D006437 8.7e-14 81.6 256 27.0
Carub.0003s0725 Capsella rubella HOM05D004224 ORTHO05D006437 1.1e-13 81.3 225 29.3
GSVIVG01030117001 Vitis vinifera HOM05D004224 ORTHO05D006437 1.1e-13 81.3 225 28.4
Cfa014211 Carpinus fangiana HOM05D004224 ORTHO05D006437 1.9e-13 80.5 256 28.1
Haze_12602 Corylus avellana HOM05D004224 ORTHO05D006437 2.5e-13 80.1 256 28.1
Haze_12613 Corylus avellana HOM05D004224 ORTHO05D006437 2.5e-13 80.1 256 28.1
Sopen06g012760 Solanum pennellii HOM05D005234 ORTHO05D006583 2.5e-13 80.1 198 28.3
MBI15_g41427_MAGBIO Magnolia biondii HOM05D004224 ORTHO05D006437 3.3e-13 79.7 225 28.0
THA.LOC104802631 Tarenaya hassleriana HOM05D004224 ORTHO05D006437 3.3e-13 79.7 225 28.9
HanXRQChr11g0329421 Helianthus annuus HOM05D004224 ORTHO05D006437 5.6e-13 79.0 221 28.1
AUR62005833 Chenopodium quinoa HOM05D005456 ORTHO05D006805 9.6e-13 78.2 223 30.0
AUR62032826 Chenopodium quinoa HOM05D005456 ORTHO05D006805 1.6e-12 77.4 165 33.9
AT3G07670 Arabidopsis thaliana HOM05D004224 ORTHO05D006437 2.1e-12 77.0 191 31.4
HPP92_018978 Vanilla planifolia HOM05D004224 ORTHO05D006437 2.1e-12 77.0 225 28.0
MD16G1067900 Malus domestica HOM05D005456 ORTHO05D006805 2.8e-12 76.6 246 28.0
AagrBONN_evm.TU.Sc2ySwM_228.2416 Anthoceros agrestis HOM05D005456 ORTHO05D006805 3.6e-12 76.3 164 29.9
QL04p067662 Quercus lobata HOM05D004224 ORTHO05D006437 3.6e-12 76.3 225 27.1
Hma1.2p1_0348F.1_g131710 Hydrangea macrophylla HOM05D005234 ORTHO05D006583 6.2e-12 75.5 102 42.2
MBI15_g45882_MAGBIO Magnolia biondii HOM05D004224 ORTHO05D006437 6.2e-12 75.5 172 30.2
Manes.01G033300 Manihot esculenta HOM05D005456 ORTHO05D006805 6.2e-12 75.5 221 30.3
Os09g0411650 Oryza sativa ssp. japonica HOM05D005456 ORTHO05D006805 6.2e-12 75.5 164 33.5
ATR0564G531 Amborella trichopoda HOM05D005456 ORTHO05D006805 8.1e-12 75.1 167 31.7
A09p62550 Brassica napus HOM05D005456 ORTHO05D006805 1.1e-11 74.7 224 26.3
CANSAT64G1501 Cannabis sativa HOM05D004224 ORTHO05D006437 1.1e-11 74.7 225 26.7
Ca_11325_v3 Cicer arietinum L. HOM05D005234 ORTHO05D006583 1.1e-11 74.7 159 32.1
HanXRQChr15g0476951 Helianthus annuus HOM05D005456 ORTHO05D006805 2.4e-11 73.6 166 32.5
Glyma.07G228300 Glycine max HOM05D005456 ORTHO05D006805 3.1e-11 73.2 167 29.9
MD17G1118300 Malus domestica HOM05D004224 ORTHO05D006437 3.1e-11 73.2 225 27.6
BolC8t52161H Brassica oleracea HOM05D005456 ORTHO05D006805 4.0e-11 72.8 168 27.4
VMungo0251G2245 Vigna mungo HOM05D005456 ORTHO05D006805 4.0e-11 72.8 168 30.4
Glyma.20G031600 Glycine max HOM05D005456 ORTHO05D006805 5.3e-11 72.4 169 30.2
Prupe.3G196100 Prunus persica HOM05D004224 ORTHO05D006437 5.3e-11 72.4 225 27.1
Ah.02g129440 Amaranthus hybridus HOM05D005456 ORTHO05D006805 6.9e-11 72.0 164 31.7
MD01G1116800 Malus domestica HOM05D005234 ORTHO05D006583 6.9e-11 72.0 139 30.2
EL10Ac6g13252 Beta vulgaris HOM05D005456 ORTHO05D006805 9.0e-11 71.6 164 31.1
Thhalv10007614m.g Eutrema salsugineum HOM05D005456 ORTHO05D006805 9.0e-11 71.6 221 26.7
Sp1g12390 Schrenkiella parvula HOM05D005456 ORTHO05D006805 9.0e-11 71.6 221 26.2
Phvul.002G169400 Phaseolus vulgaris HOM05D005456 ORTHO05D006805 1.2e-10 71.2 168 30.4
BraA09t38797Z Brassica rapa HOM05D005234 ORTHO05D006583 2.0e-10 70.5 158 28.5
ECA246G4417 Erigeron canadensis HOM05D005456 ORTHO05D006805 2.6e-10 70.1 247 27.9
Lalb_Chr05g0220241 Lupinus albus HOM05D005456 ORTHO05D006805 2.6e-10 70.1 167 29.3
Carub.0001s1372 Capsella rubella HOM05D005456 ORTHO05D006805 3.4e-10 69.7 222 26.6
CARHR165100 Cardamine hirsuta HOM05D005234 ORTHO05D006583 4.4e-10 69.3 113 35.4
Lsat_1_v5_gn_3_51901 Lactuca sativa HOM05D005456 ORTHO05D006805 5.8e-10 68.9 164 29.9
AL1G25870 Arabidopsis lyrata HOM05D005456 ORTHO05D006805 7.6e-10 68.6 221 26.2
AT1G14030 Arabidopsis thaliana HOM05D005456 ORTHO05D006805 7.6e-10 68.6 221 26.2
Lalb_Chr16g0385691 Lupinus albus HOM05D005456 ORTHO05D006805 7.6e-10 68.6 226 27.4
arahy.Tifrunner.gnm1.ann1.YEC905 Arachis hypogaea HOM05D005456 ORTHO05D006805 1.7e-09 67.4 170 29.4
Lj4g0024233 Lotus japonicus HOM05D005456 ORTHO05D006805 1.7e-09 67.4 173 30.1
BcaB08g34359 Brassica carinata HOM05D005456 ORTHO05D006805 2.2e-09 67.0 215 25.6
CARHR014400 Cardamine hirsuta HOM05D005456 ORTHO05D006805 3.8e-09 66.2 221 25.8
CSS0032920 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D004861 4.9e-09 65.9 217 24.4
DCAR_030997 Daucus carota HOM05D005456 ORTHO05D006805 4.9e-09 65.9 246 27.6
BolC8t50645H Brassica oleracea HOM05D005234 ORTHO05D006583 6.4e-09 65.5 203 26.6
Medtr4g082305 Medicago truncatula HOM05D005456 ORTHO05D006805 6.4e-09 65.5 251 26.3
arahy.Tifrunner.gnm1.ann1.HIV449 Arachis hypogaea HOM05D005456 ORTHO05D006805 8.4e-09 65.1 170 28.8
CANSAT64G0403 Cannabis sativa HOM05D005456 ORTHO05D006805 8.4e-09 65.1 226 27.0
PRCOL_00003046 Prasinoderma coloniale HOM05D005416 ORTHO05D007956 8.4e-09 65.1 173 28.3
BolC8t50642H Brassica oleracea HOM05D005234 ORTHO05D006583 1.4e-08 64.3 201 26.4
BraA01t04368Z Brassica rapa HOM05D004224 ORTHO05D006437 1.9e-08 63.9 213 25.8
Ca_08719_v3 Cicer arietinum L. HOM05D005456 ORTHO05D006805 1.9e-08 63.9 168 28.0
Thecc.02G292000 Theobroma cacao HOM05D005416 ORTHO05D007956 4.2e-08 62.8 174 28.7
GSVIVG01003217001 Vitis vinifera HOM05D005456 ORTHO05D006805 4.2e-08 62.8 184 26.6
Solyc06g036700.3 Solanum lycopersicum HOM05D005234 ORTHO05D006583 7.1e-08 62.0 129 27.9
PGR102G2697 Punica granatum HOM05D005416 ORTHO05D007956 9.3e-08 61.6 179 27.9
Migut.E00473 Erythranthe guttata HOM05D005416 ORTHO05D007956 1.6e-07 60.8 182 28.0
Lalb_Chr16g0387601 Lupinus albus HOM05D005416 ORTHO05D007956 1.6e-07 60.8 174 28.7
BolC8t50648H Brassica oleracea HOM05D005234 ORTHO05D006583 2.1e-07 60.5 197 26.4
CSS0021401 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D004861 2.7e-07 60.1 195 24.1
Gorai.008G168000 Gossypium raimondii HOM05D005416 ORTHO05D007956 2.7e-07 60.1 175 29.7
Gohir.A12G151900 Gossypium hirsutum HOM05D005416 ORTHO05D007956 3.5e-07 59.7 174 28.7
Sc09g0006860 Simmondsia chinensis HOM05D005234 ORTHO05D006583 3.5e-07 59.7 142 26.8
Pp3c1_8530 Physcomitrium patens HOM05D005416 ORTHO05D007956 4.6e-07 59.3 229 24.9
Cre03.g164650 Chlamydomonas reinhardtii HOM05D007044 ORTHO05D008981 6.0e-07 58.9 176 27.3
COL.COLO4_16581 Corchorus olitorius HOM05D005416 ORTHO05D007956 6.0e-07 58.9 177 28.2
Gohir.D12G155501 Gossypium hirsutum HOM05D005416 ORTHO05D007956 7.9e-07 58.5 174 29.3
BcaC07g39828 Brassica carinata HOM05D005234 ORTHO05D006583 1.7e-06 57.4 221 24.0
SEGI_37558 Sequoiadendron giganteum HOM05D005416 ORTHO05D007956 3.9e-06 56.2 197 26.4
Zm00001eb190260 Zea mays HOM05D005416 ORTHO05D007956 6.6e-06 55.5 166 26.5
SGA_v2.0_scaffold455G51903 Striga asiatica HOM05D005456 ORTHO05D006805 8.7e-06 55.1 250 26.8


User provided reference genes

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