Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO275G0031 Selaginella moellendorffii HOM05D004813 ORTHO05D005889 6.9e-236 820.5 477 100.0
SMO367G0656 Selaginella moellendorffii HOM05D004813 ORTHO05D005889 1.8e-175 619.8 412 89.8
Cfa019150 Carpinus fangiana HOM05D004813 ORTHO05D005889 5.5e-84 315.8 452 47.3
COL.COLO4_30069 Corchorus olitorius HOM05D004813 ORTHO05D005889 5.7e-81 305.8 444 45.9
Phvul.003G201700 Phaseolus vulgaris HOM05D004813 ORTHO05D005889 7.4e-81 305.4 455 44.8
Ca_21934_v3 Cicer arietinum L. HOM05D004813 ORTHO05D005889 1.3e-80 304.7 454 44.9
AUR62013092 Chenopodium quinoa HOM05D004813 ORTHO05D005889 2.2e-80 303.9 402 46.8
Oeu016404.1 Olea europaea HOM05D004813 ORTHO05D005889 2.8e-80 303.5 466 44.0
VMungo1215G0389 Vigna mungo HOM05D004813 ORTHO05D005889 2.8e-80 303.5 477 46.8
DCAR_031351 Daucus carota HOM05D004813 ORTHO05D005889 6.3e-80 302.4 425 46.1
Psat4g058360 Pisum sativum HOM05D004813 ORTHO05D005889 6.3e-80 302.4 461 40.8
Potri.012G082600 Populus trichocarpa HOM05D004813 ORTHO05D005889 1.8e-79 300.8 455 45.1
Glyma.05G038800 Glycine max HOM05D004813 ORTHO05D005889 3.1e-79 300.1 459 44.7
arahy.Tifrunner.gnm1.ann1.J26J1M Arachis hypogaea HOM05D004813 ORTHO05D005889 4.1e-79 299.7 477 43.6
Thhalv10003981m.g Eutrema salsugineum HOM05D004813 ORTHO05D005889 5.3e-79 299.3 473 47.1
Nitab4.5_0000514g0060 Nicotiana tabacum HOM05D004813 ORTHO05D005889 6.9e-79 298.9 494 42.5
Peaxi162Scf00089g01844 Petunia axillaris HOM05D004813 ORTHO05D005889 6.9e-79 298.9 490 40.6
Glyma.17G088200 Glycine max HOM05D004813 ORTHO05D005889 9.1e-79 298.5 458 45.2
ATR1091G095 Amborella trichopoda HOM05D004813 ORTHO05D005889 1.5e-78 297.7 463 45.4
Lj4g0001275 Lotus japonicus HOM05D004813 ORTHO05D005889 1.5e-78 297.7 473 43.3
Nn4g22713 Nelumbo nucifera HOM05D004813 ORTHO05D005889 1.5e-78 297.7 489 42.7
Manes.14G064300 Manihot esculenta HOM05D004813 ORTHO05D005889 2.0e-78 297.4 488 42.0
Sabra15G0103000 Salix brachista HOM05D004813 ORTHO05D005889 2.0e-78 297.4 462 46.5
CsaV3_1G000640 Cucumis sativus L. HOM05D004813 ORTHO05D005889 4.5e-78 296.2 474 43.0
arahy.Tifrunner.gnm1.ann1.9LWV25 Arachis hypogaea HOM05D004813 ORTHO05D005889 5.9e-78 295.8 483 42.4
Dinv20637 Davidia involucrata HOM05D004813 ORTHO05D005889 5.9e-78 295.8 470 43.4
Gohir.D12G275800 Gossypium hirsutum HOM05D004813 ORTHO05D005889 1.3e-77 294.7 489 42.5
Gorai.008G296300 Gossypium raimondii HOM05D004813 ORTHO05D005889 1.3e-77 294.7 491 42.2
Cc04_g12130 Coffea canephora HOM05D004813 ORTHO05D005889 1.7e-77 294.3 506 41.9
MBI16_g39216_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 1.7e-77 294.3 496 46.4
TAR629G2765 Trochodendron aralioides HOM05D004813 ORTHO05D005889 1.7e-77 294.3 479 42.8
AT5G66540 Arabidopsis thaliana HOM05D004813 ORTHO05D005889 2.2e-77 293.9 465 45.4
CSS0044871 Camellia sinensis var. sinensis HOM05D004813 ORTHO05D005889 2.2e-77 293.9 496 41.9
GSVIVG01007723001 Vitis vinifera HOM05D004813 ORTHO05D005889 2.2e-77 293.9 411 45.0
A07p17440 Brassica napus HOM05D004813 ORTHO05D005889 2.9e-77 293.5 471 43.9
CSS0009747 Camellia sinensis var. sinensis HOM05D004813 ORTHO05D005889 1.1e-76 291.6 484 43.8
unitig_0.g15 Utricularia gibba HOM05D004813 ORTHO05D005889 1.1e-76 291.6 459 42.9
Rhsim12G0165800 Rhododendron simsii HOM05D004813 ORTHO05D005889 1.4e-76 291.2 429 43.4
Ciclev10019513m.g Citrus clementina HOM05D004813 ORTHO05D005889 1.9e-76 290.8 499 40.7
RcHm_v2.0_Chr7g0193361 Rosa chinensis HOM05D004813 ORTHO05D005889 2.5e-76 290.4 447 47.4
CDE05G0644 Ceratophyllum demersum HOM05D004813 ORTHO05D005889 7.2e-76 288.9 473 42.1
MELO3C026213.2 Cucumis melo HOM05D004813 ORTHO05D005889 9.4e-76 288.5 473 42.9
MBI16_g37492_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 1.2e-75 288.1 489 44.6
MD14G1178200 Malus domestica HOM05D004813 ORTHO05D005889 1.6e-75 287.7 489 41.9
CARHR281210 Cardamine hirsuta HOM05D004813 ORTHO05D005889 2.1e-75 287.3 481 43.7
Cpa.g.sc76.31 Carica papaya HOM05D004813 ORTHO05D005889 2.1e-75 287.3 463 43.0
Potri.015G078500 Populus trichocarpa HOM05D004813 ORTHO05D005889 2.1e-75 287.3 491 45.0
Lalb_Chr07g0182801 Lupinus albus HOM05D004813 ORTHO05D005889 2.7e-75 287.0 481 42.6
CiPaw.11G024600 Carya illinoinensis HOM05D004813 ORTHO05D005889 4.7e-75 286.2 449 43.2
MBI17_g17505_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 4.7e-75 286.2 485 47.0
Hund02755 Selenicereus undatus HOM05D004813 ORTHO05D005889 1.4e-74 284.6 517 42.0
Solyc03g112820.4 Solanum lycopersicum HOM05D004813 ORTHO05D005889 1.8e-74 284.3 248 59.3
Zm00001eb293550 Zea mays HOM05D004813 ORTHO05D005889 1.8e-74 284.3 479 43.6
MD06G1172400 Malus domestica HOM05D004813 ORTHO05D005889 2.3e-74 283.9 229 63.8
Sc04g0001740 Simmondsia chinensis HOM05D004813 ORTHO05D005889 3.0e-74 283.5 513 38.0
Gohir.A12G275100 Gossypium hirsutum HOM05D004813 ORTHO05D005889 3.9e-74 283.1 479 41.1
PGR044G0958 Punica granatum HOM05D004813 ORTHO05D005889 3.9e-74 283.1 505 45.0
Carub.0002s0981 Capsella rubella HOM05D004813 ORTHO05D005889 5.2e-74 282.7 484 43.0
AUR62010096 Chenopodium quinoa HOM05D004813 ORTHO05D005889 5.2e-74 282.7 402 44.0
Prupe.5G171700 Prunus persica HOM05D004813 ORTHO05D005889 5.2e-74 282.7 240 61.2
BcaB02g10019 Brassica carinata HOM05D004813 ORTHO05D005889 6.7e-74 282.3 483 41.2
BolC9t54072H Brassica oleracea HOM05D004813 ORTHO05D005889 8.8e-74 282.0 478 41.8
Thecc.03G014500 Theobroma cacao HOM05D004813 ORTHO05D005889 1.1e-73 281.6 492 40.2
Aa31LG1G15060 Aethionema arabicum HOM05D004813 ORTHO05D005889 3.3e-73 280.0 506 44.1
BcaC04g23133 Brassica carinata HOM05D004813 ORTHO05D005889 4.4e-73 279.6 482 41.5
Os11g0137100 Oryza sativa ssp. japonica HOM05D004813 ORTHO05D005889 4.4e-73 279.6 462 42.4
Sp2g30180 Schrenkiella parvula HOM05D004813 ORTHO05D005889 5.7e-73 279.3 470 43.2
CANSAT80G1068 Cannabis sativa HOM05D004813 ORTHO05D005889 7.4e-73 278.9 261 59.4
Atru.chr9.2495 Acer truncatum HOM05D004813 ORTHO05D005889 1.3e-72 278.1 259 59.5
Lj9A420T39 Lonicera japonica HOM05D004813 ORTHO05D005889 1.3e-72 278.1 407 43.7
TWI14G0980 Tripterygium wilfordii HOM05D004813 ORTHO05D005889 1.3e-72 278.1 494 41.3
QL10p010983 Quercus lobata HOM05D004813 ORTHO05D005889 1.7e-72 277.7 498 40.0
Eucgr.K02829 Eucalyptus grandis HOM05D004813 ORTHO05D005889 2.2e-72 277.3 529 41.0
FAN13G1879 Fragaria x ananassa HOM05D004813 ORTHO05D005889 2.2e-72 277.3 452 44.2
Sed0018710 Sechium edule HOM05D004813 ORTHO05D005889 2.2e-72 277.3 499 39.7
C09p11820 Brassica napus HOM05D004813 ORTHO05D005889 2.8e-72 276.9 484 41.9
FAN08G2504 Fragaria x ananassa HOM05D004813 ORTHO05D005889 3.7e-72 276.6 445 43.6
PGSC0003DMG400018096 Solanum tuberosum HOM05D004813 ORTHO05D005889 3.7e-72 276.6 489 40.1
BcaNung05723 Brassica carinata HOM05D004813 ORTHO05D005889 4.8e-72 276.2 480 42.1
Atru.chr8.1447 Acer truncatum HOM05D004813 ORTHO05D005889 6.3e-72 275.8 510 43.5
BraA09t36642Z Brassica rapa HOM05D004813 ORTHO05D005889 6.3e-72 275.8 459 42.7
Pp3c4_31210 Physcomitrium patens HOM05D004813 ORTHO05D005889 6.3e-72 275.8 539 41.7
A09p09960 Brassica napus HOM05D004813 ORTHO05D005889 8.2e-72 275.4 465 41.9
Sopen03g031900 Solanum pennellii HOM05D004813 ORTHO05D005889 8.2e-72 275.4 478 39.1
Carub.0008s2799 Capsella rubella HOM05D004813 ORTHO05D005889 1.1e-71 275.0 473 43.3
FAN18G4177 Fragaria x ananassa HOM05D004813 ORTHO05D005889 1.1e-71 275.0 442 45.0
FAN04G1884 Fragaria x ananassa HOM05D004813 ORTHO05D005889 1.4e-71 274.6 442 47.3
Os12g0133900 Oryza sativa ssp. japonica HOM05D004813 ORTHO05D005889 3.1e-71 273.5 473 41.6
FAN18G0441 Fragaria x ananassa HOM05D004813 ORTHO05D005889 4.1e-71 273.1 445 46.3
AL8G44980 Arabidopsis lyrata HOM05D004813 ORTHO05D005889 9.1e-71 271.9 470 42.6
TPR.G37503 Trifolium pratense HOM05D004813 ORTHO05D005889 1.2e-70 271.6 255 57.6
PSO063G0570 Papaver somniferum HOM05D004813 ORTHO05D005889 2.6e-70 270.4 492 39.0
PSO832G2178 Papaver somniferum HOM05D004813 ORTHO05D005889 4.5e-70 269.6 489 37.8
Aqoxy3G02883 Aquilegia oxysepala HOM05D004813 ORTHO05D005889 5.9e-70 269.2 266 55.6
Migut.D01957 Erythranthe guttata HOM05D004813 ORTHO05D005889 1.0e-69 268.5 529 41.0
Mapoly0077s0037 Marchantia polymorpha HOM05D004813 ORTHO05D005889 1.7e-69 267.7 547 39.3
Medtr4g105590 Medicago truncatula HOM05D004813 ORTHO05D005889 2.2e-69 267.3 491 38.7
FvH4_5g05471 Fragaria vesca HOM05D004813 ORTHO05D005889 3.2e-68 263.5 443 45.1
SalBow6G0518 Salvia bowleyana HOM05D004813 ORTHO05D005889 3.2e-68 263.5 514 42.4
EL10Ac9g21440 Beta vulgaris HOM05D004813 ORTHO05D005889 5.5e-68 262.7 511 41.1
vmacro16622 Vaccinium macrocarpon HOM05D004813 ORTHO05D005889 9.4e-68 261.9 512 38.1
TWI23G0210 Tripterygium wilfordii HOM05D004813 ORTHO05D005889 1.2e-67 261.5 534 37.8
HanXRQChr15g0463041 Helianthus annuus HOM05D004813 ORTHO05D005889 2.1e-67 260.8 490 37.8
Lsat_1_v5_gn_4_75841 Lactuca sativa HOM05D004813 ORTHO05D005889 1.4e-66 258.1 492 38.2
ECA232G2493 Erigeron canadensis HOM05D004813 ORTHO05D005889 1.5e-65 254.6 479 39.9
ClCG06G017810 Citrullus lanatus HOM05D004813 ORTHO05D005889 2.0e-65 254.2 556 35.6
AagrBONN_evm.TU.Sc2ySwM_369.357 Anthoceros agrestis HOM05D004813 ORTHO05D005889 2.6e-65 253.8 535 38.5
Haze_07517 Corylus avellana HOM05D004813 ORTHO05D005889 3.3e-65 253.4 517 38.9
Nitab4.5_0008678g0020 Nicotiana tabacum HOM05D004813 ORTHO05D005889 4.4e-65 253.1 262 55.3
MD01G1006000 Malus domestica HOM05D004813 ORTHO05D005889 9.1e-63 245.4 198 64.1
SGA_v2.0_scaffold114G31819 Striga asiatica HOM05D004813 ORTHO05D005889 3.5e-62 243.4 551 37.2
Haze_17000 Corylus avellana HOM05D004813 ORTHO05D005889 1.0e-61 241.9 443 42.4
BraA07t29465Z Brassica rapa HOM05D004813 ORTHO05D005889 4.2e-60 236.5 398 41.7
Psat4g058280 Pisum sativum HOM05D004813 ORTHO05D005889 3.6e-59 233.4 392 39.5
HPP92_018752 Vanilla planifolia HOM05D004813 ORTHO05D005889 1.7e-56 224.6 446 39.2
Oeu020911.1 Olea europaea HOM05D004813 ORTHO05D005889 2.9e-53 213.8 249 51.0
CBR_g26354 Chara braunii HOM05D004813 ORTHO05D005889 1.1e-52 211.8 292 47.3
Ah.01g009190 Amaranthus hybridus HOM05D004813 ORTHO05D005889 4.9e-48 196.4 236 47.9
Cre08.g370601 Chlamydomonas reinhardtii HOM05D004813 ORTHO05D005889 5.9e-46 189.5 244 45.5
arahy.Tifrunner.gnm1.ann1.J34B41 Arachis hypogaea HOM05D004813 ORTHO05D005889 8.6e-45 185.7 189 54.0
CAN.G1166.5 Capsicum annuum HOM05D004813 ORTHO05D005889 1.1e-39 168.7 161 57.1
PGR044G0267 Punica granatum HOM05D004813 ORTHO05D005889 1.2e-38 165.2 146 57.5
BolC7t43059H Brassica oleracea HOM05D004813 ORTHO05D005889 1.6e-35 154.8 257 40.5
Actinidia19106 Actinidia chinensis HOM05D004813 ORTHO05D005889 4.7e-35 153.3 124 62.9
PRCOL_00002680 Prasinoderma coloniale HOM05D004813 ORTHO05D005889 4.7e-35 153.3 265 39.6
BcaC06g34713 Brassica carinata HOM05D004813 ORTHO05D005889 7.0e-31 139.4 189 45.5
BcaNung06644 Brassica carinata HOM05D004813 ORTHO05D005889 7.0e-31 139.4 189 45.5
C07p25370 Brassica napus HOM05D004813 ORTHO05D005889 2.0e-30 137.9 250 40.8
Actinidia19105 Actinidia chinensis HOM05D004813 ORTHO05D005889 7.8e-30 136.0 294 38.8
SEGI_37748 Sequoiadendron giganteum HOM05D004813 ORTHO05D005889 7.3e-28 129.4 305 41.3
CAN.G1166.4 Capsicum annuum HOM05D004813 ORTHO05D005889 9.5e-28 129.0 321 35.2
SEGI_16864 Sequoiadendron giganteum HOM05D004813 ORTHO05D005889 1.8e-26 124.8 163 51.5
MCO01G452 Micromonas commoda HOM05D004813 ORTHO05D005889 7.3e-20 102.8 405 26.9
MBI14_g23619_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 9.9e-17 92.4 62 67.7
Haze_20617 Corylus avellana HOM05D004813 ORTHO05D005889 7.8e-14 82.8 154 41.6
Lj3g0016907 Lotus japonicus HOM05D004813 ORTHO05D005889 1.3e-13 82.0 162 34.6
MBI05_g41028_MAGBIO Magnolia biondii HOM05D000669 ORTHO05D005889 1.1e-12 79.0 79 53.2
MBI07_g10351_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 1.9e-12 78.2 91 46.2
SEGI_40991 Sequoiadendron giganteum HOM05D004813 ORTHO05D005889 2.4e-10 71.2 64 56.2
HanXRQChr11g0336351 Helianthus annuus HOM05D004813 ORTHO05D005889 1.5e-09 68.6 71 47.9
Lj6g0012951 Lotus japonicus HOM05D004813 ORTHO05D005889 9.9e-09 65.9 68 50.0
SalBow1G5081 Salvia bowleyana HOM05D004813 ORTHO05D018488 2.2e-08 64.7 53 67.9
MBI03_g03787_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 1.2e-06 58.9 37 67.6


User provided reference genes

Program Settings