Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO273G0018 Selaginella moellendorffii HOM05D005251 ORTHO05D006680 0.0e+00 1147.9 625 100.0
SMO147G0126 Selaginella moellendorffii HOM05D005251 ORTHO05D006680 5.4e-289 997.3 625 89.6
Pp3c16_14300 Physcomitrium patens HOM05D005251 ORTHO05D006680 7.8e-163 578.2 643 54.0
Mapoly0009s0116 Marchantia polymorpha HOM05D005251 ORTHO05D006680 8.0e-160 568.2 647 53.8
Dinv36771 Davidia involucrata HOM05D005251 ORTHO05D006680 7.6e-142 508.4 644 43.2
MSTRG.10560 Avicennia marina HOM05D005251 ORTHO05D006680 9.9e-142 508.1 652 45.6
THA.LOC104817759 Tarenaya hassleriana HOM05D005251 ORTHO05D006680 1.3e-141 507.7 645 44.7
PGSC0003DMG400000278 Solanum tuberosum HOM05D005251 ORTHO05D006680 2.2e-141 506.9 639 46.8
TAR624G0724 Trochodendron aralioides HOM05D005251 ORTHO05D006680 8.4e-141 505.0 638 44.5
CiPaw.03G215300 Carya illinoinensis HOM05D005251 ORTHO05D006680 1.1e-140 504.6 645 43.7
Manes.03G034200 Manihot esculenta HOM05D005251 ORTHO05D006680 4.2e-140 502.7 642 44.5
AL8G32750 Arabidopsis lyrata HOM05D005251 ORTHO05D006680 9.2e-140 501.5 636 46.2
Nn8g38856 Nelumbo nucifera HOM05D005251 ORTHO05D006680 2.1e-139 500.4 646 43.7
Migut.L01497 Erythranthe guttata HOM05D005251 ORTHO05D006680 4.6e-139 499.2 638 45.1
PSO210G1153 Papaver somniferum HOM05D005251 ORTHO05D006680 6.0e-139 498.8 635 44.9
CSS0048193 Camellia sinensis var. sinensis HOM05D005251 ORTHO05D006680 7.8e-139 498.4 643 42.1
BcaB08g36046 Brassica carinata HOM05D005251 ORTHO05D006680 3.9e-138 496.1 637 46.5
PSO210G7113 Papaver somniferum HOM05D005251 ORTHO05D006680 3.9e-138 496.1 641 45.4
Potri.006G152100 Populus trichocarpa HOM05D005251 ORTHO05D006680 3.9e-138 496.1 649 44.2
Thecc.09G088600 Theobroma cacao HOM05D005251 ORTHO05D006680 1.5e-137 494.2 650 43.1
Aqoxy7G04044 Aquilegia oxysepala HOM05D005251 ORTHO05D006680 2.5e-137 493.4 646 44.6
CSS0047543 Camellia sinensis var. sinensis HOM05D005251 ORTHO05D006680 2.5e-137 493.4 643 42.1
Lj4g0006207 Lotus japonicus HOM05D005251 ORTHO05D006680 2.5e-137 493.4 640 44.4
HanXRQChr06g0178551 Helianthus annuus HOM05D005251 ORTHO05D006680 4.3e-137 492.7 643 45.1
AT5G56900 Arabidopsis thaliana HOM05D005251 ORTHO05D006680 5.6e-137 492.3 636 45.4
Aa31LG3G12780 Aethionema arabicum HOM05D005251 ORTHO05D006680 7.3e-137 491.9 646 45.0
BcaC04g20043 Brassica carinata HOM05D005251 ORTHO05D006680 1.2e-136 491.1 637 45.8
BolC9t57695H Brassica oleracea HOM05D005251 ORTHO05D006680 1.2e-136 491.1 637 45.8
CAN.G1241.24 Capsicum annuum HOM05D005251 ORTHO05D006680 2.1e-136 490.3 661 44.8
Ciclev10010506m.g Citrus clementina HOM05D005251 ORTHO05D006680 2.8e-136 490.0 642 44.1
Sp6g18620 Schrenkiella parvula HOM05D005251 ORTHO05D006680 2.8e-136 490.0 636 45.4
C09p48540 Brassica napus HOM05D005251 ORTHO05D006680 3.6e-136 489.6 637 45.7
Thhalv10013022m.g Eutrema salsugineum HOM05D005251 ORTHO05D006680 2.4e-135 486.9 642 45.3
Actinidia39715 Actinidia chinensis HOM05D005251 ORTHO05D006680 3.1e-135 486.5 643 41.8
Eucgr.C00887 Eucalyptus grandis HOM05D005251 ORTHO05D006680 3.1e-135 486.5 637 43.6
TWI34G0442 Tripterygium wilfordii HOM05D005251 ORTHO05D006680 4.0e-135 486.1 643 43.1
Cc06_g11450 Coffea canephora HOM05D005251 ORTHO05D006680 1.2e-134 484.6 644 44.6
PGR142G3350 Punica granatum HOM05D005251 ORTHO05D006680 1.2e-134 484.6 644 43.0
Gorai.010G083200 Gossypium raimondii HOM05D005251 ORTHO05D006680 2.6e-134 483.4 644 42.7
Carub.0008s1736 Capsella rubella HOM05D005251 ORTHO05D006680 1.7e-133 480.7 635 45.2
Gohir.A06G072900 Gossypium hirsutum HOM05D005251 ORTHO05D006680 4.9e-133 479.2 646 41.3
A10p14170 Brassica napus HOM05D005251 ORTHO05D006680 8.4e-133 478.4 666 44.6
Ah.09g228240 Amaranthus hybridus HOM05D005251 ORTHO05D006680 1.1e-132 478.0 639 44.1
Os09g0364000 Oryza sativa ssp. japonica HOM05D005251 ORTHO05D006680 1.1e-132 478.0 641 44.9
AUR62033961 Chenopodium quinoa HOM05D005251 ORTHO05D006680 5.4e-132 475.7 635 43.6
Prupe.7G209200 Prunus persica HOM05D005251 ORTHO05D006680 5.4e-132 475.7 638 42.8
FvH4_1g07540 Fragaria vesca HOM05D005251 ORTHO05D006680 7.1e-132 475.3 638 43.7
CsaV3_1G040480 Cucumis sativus L. HOM05D005251 ORTHO05D006680 7.8e-131 471.9 640 43.6
ECA232G2798 Erigeron canadensis HOM05D005251 ORTHO05D006680 2.3e-130 470.3 611 42.4
Phvul.003G136700 Phaseolus vulgaris HOM05D005251 ORTHO05D006680 2.3e-130 470.3 638 42.5
Rhsim05G0020500 Rhododendron simsii HOM05D005251 ORTHO05D006680 3.9e-130 469.5 650 40.6
AagrBONN_evm.TU.Sc2ySwM_228.1764 Anthoceros agrestis HOM05D005251 ORTHO05D006680 6.6e-130 468.8 615 43.1
Glyma.13G104400 Glycine max HOM05D005251 ORTHO05D006680 6.6e-130 468.8 642 43.1
Atru.BG.14.p Acer truncatum HOM05D005251 ORTHO05D006680 8.7e-130 468.4 630 43.7
MELO3C015476.2 Cucumis melo HOM05D005251 ORTHO05D006680 1.9e-129 467.2 640 43.1
EL10Ac8g19209 Beta vulgaris HOM05D005251 ORTHO05D006680 3.3e-129 466.5 640 43.0
AUR62029068 Chenopodium quinoa HOM05D005251 ORTHO05D006680 1.6e-128 464.2 635 42.5
Gohir.D06G071400 Gossypium hirsutum HOM05D005251 ORTHO05D006680 1.4e-127 461.1 682 40.3
Cpa.g.sc61.41 Carica papaya HOM05D005251 ORTHO05D006680 3.1e-127 459.9 637 40.0
GSVIVG01015197001 Vitis vinifera HOM05D005251 ORTHO05D006680 1.2e-126 458.0 644 42.4
Sabra06G0120400 Salix brachista HOM05D005251 ORTHO05D006680 2.0e-126 457.2 642 42.7
TPR.G9472 Trifolium pratense HOM05D005251 ORTHO05D006680 2.6e-126 456.8 653 42.7
FAN19G0073 Fragaria x ananassa HOM05D005251 ORTHO05D006680 4.5e-126 456.1 637 42.9
FAN23G1060 Fragaria x ananassa HOM05D005251 ORTHO05D006680 9.9e-126 454.9 637 42.9
RcHm_v2.0_Chr2g0093421 Rosa chinensis HOM05D005251 ORTHO05D006680 2.9e-125 453.4 639 43.2
arahy.Tifrunner.gnm1.ann1.Y01GTZ Arachis hypogaea HOM05D005251 ORTHO05D006680 3.8e-125 453.0 630 43.7
Lj4A303G24 Lonicera japonica HOM05D005251 ORTHO05D006680 1.9e-124 450.7 609 44.2
Medtr4g126260 Medicago truncatula HOM05D005251 ORTHO05D006680 1.9e-124 450.7 640 42.2
Haze_25916 Corylus avellana HOM05D005251 ORTHO05D006680 3.2e-124 449.9 645 41.2
FAN28G0072 Fragaria x ananassa HOM05D005251 ORTHO05D006680 3.2e-124 449.9 651 42.4
BraA10t43510Z Brassica rapa HOM05D005251 ORTHO05D006680 3.5e-123 446.4 645 43.3
MD02G1080200 Malus domestica HOM05D005251 ORTHO05D006680 3.0e-122 443.4 644 42.4
Cfa003082 Carpinus fangiana HOM05D005251 ORTHO05D006680 4.3e-121 439.5 644 40.2
QL02p062545 Quercus lobata HOM05D005251 ORTHO05D006680 4.3e-121 439.5 611 43.2
MBI04_g31157_MAGBIO Magnolia biondii HOM05D005251 ORTHO05D006680 1.6e-120 437.6 611 42.1
Duzib150G0576 Durio zibethinus HOM05D005251 ORTHO05D006680 1.4e-119 434.5 639 40.4
Lsat_1_v5_gn_8_87701 Lactuca sativa HOM05D005251 ORTHO05D006680 9.0e-119 431.8 631 41.7
FAN26G3339 Fragaria x ananassa HOM05D005251 ORTHO05D006680 5.8e-118 429.1 657 40.9
Oeu018416.2 Olea europaea HOM05D005251 ORTHO05D006680 5.8e-118 429.1 660 40.3
VMungo1215G2738 Vigna mungo HOM05D005251 ORTHO05D006680 9.9e-118 428.3 649 40.1
CANSAT56G1459 Cannabis sativa HOM05D005251 ORTHO05D006680 2.2e-117 427.2 582 42.4
FAN26G1479 Fragaria x ananassa HOM05D005251 ORTHO05D006680 2.2e-117 427.2 657 40.8
ClCG03G015560 Citrullus lanatus HOM05D005251 ORTHO05D006680 1.0e-114 418.3 625 41.6
Psat4g015200 Pisum sativum HOM05D005251 ORTHO05D006680 1.1e-113 414.8 548 44.5
Ca_21279_v3 Cicer arietinum L. HOM05D005251 ORTHO05D006680 1.8e-111 407.5 596 41.4
Sc18g0002110 Simmondsia chinensis HOM05D005251 ORTHO05D006680 2.0e-110 404.1 550 44.7
Glyma.17G054700 Glycine max HOM05D005251 ORTHO05D006680 8.4e-109 398.7 542 43.9
COL.COLO4_18196 Corchorus olitorius HOM05D005251 ORTHO05D006680 3.3e-105 386.7 644 37.1
Sed0019984 Sechium edule HOM05D005251 ORTHO05D006680 1.1e-103 381.7 520 44.2
unitig_8.g4690 Utricularia gibba HOM05D005251 ORTHO05D006680 9.4e-92 342.0 579 40.4
vmacro17241 Vaccinium macrocarpon HOM05D005251 ORTHO05D006680 4.1e-87 326.6 473 39.7
CARHR270650 Cardamine hirsuta HOM05D005251 ORTHO05D006680 1.2e-86 325.1 443 44.9
PRCOL_00000275 Prasinoderma coloniale HOM05D005251 ORTHO05D006680 3.8e-85 320.1 683 33.8
Lalb_Chr12g0199791 Lupinus albus HOM05D005251 ORTHO05D006680 9.4e-84 315.5 470 41.5
SGA_v2.0_scaffold21G09390 Striga asiatica HOM05D005251 ORTHO05D006680 6.1e-83 312.8 447 43.8
MD15G1207600 Malus domestica HOM05D005251 ORTHO05D006680 5.2e-82 309.7 464 37.5
Cre07.g338900 Chlamydomonas reinhardtii HOM05D005251 ORTHO05D006680 1.0e-74 285.4 676 31.7
CBR_g54012 Chara braunii HOM05D005251 ORTHO05D006680 3.3e-73 280.4 751 32.6
Peaxi162Scf00498g00321 Petunia axillaris HOM05D005251 ORTHO05D006680 2.1e-67 261.2 425 37.2
Atru.chr7.1595 Acer truncatum HOM05D005251 ORTHO05D006680 8.8e-66 255.8 388 42.0
Sopen12g003800 Solanum pennellii HOM05D005251 ORTHO05D006680 4.1e-63 246.9 381 43.8
Solyc12g008870.1 Solanum lycopersicum HOM05D005251 ORTHO05D006680 1.6e-62 245.0 381 43.6
Nitab4.5_0000540g0310 Nicotiana tabacum HOM05D005251 ORTHO05D006680 3.8e-61 240.4 377 39.0
Zm00001eb311020 Zea mays HOM05D005251 ORTHO05D006680 8.9e-58 229.2 383 41.5
ATR0789G159 Amborella trichopoda HOM05D005251 ORTHO05D006680 1.5e-52 211.8 381 38.6
SEGI_26696 Sequoiadendron giganteum HOM05D005251 ORTHO05D006680 1.6e-43 181.8 298 47.0
Nitab4.5_0008523g0050 Nicotiana tabacum HOM05D005251 ORTHO05D006680 9.8e-41 172.6 432 30.6
MCO07G467 Micromonas commoda HOM05D005251 ORTHO05D006680 1.1e-39 169.1 422 32.7
arahy.Tifrunner.gnm1.ann1.V18GKH Arachis hypogaea HOM05D005251 ORTHO05D006680 7.8e-38 162.9 164 50.6
Sopen12g003810 Solanum pennellii HOM05D005251 ORTHO05D006680 3.9e-37 160.6 167 47.9
C09p50860 Brassica napus HOM05D005251 ORTHO05D006680 9.9e-33 146.0 167 43.7
HPP92_009143 Vanilla planifolia HOM05D005251 ORTHO05D006680 4.9e-32 143.7 209 37.8
HPP92_009144 Vanilla planifolia HOM05D005251 ORTHO05D006680 6.4e-32 143.3 219 38.4
Lalb_Chr12g0199801 Lupinus albus HOM05D005251 ORTHO05D006680 1.6e-30 138.7 166 45.2
SGA_v2.0_scaffold21G09392 Striga asiatica HOM05D005251 ORTHO05D006680 1.7e-29 135.2 116 53.4
arahy.Tifrunner.gnm1.ann1.BFBS1X Arachis hypogaea HOM05D005251 ORTHO05D006680 2.5e-28 131.3 178 38.8
ATR0789G123 Amborella trichopoda HOM05D005251 ORTHO05D006680 4.3e-28 130.6 113 52.2
Solyc12g008890.3 Solanum lycopersicum HOM05D005251 ORTHO05D006680 5.2e-26 123.6 111 51.4
BcaNung02827 Brassica carinata HOM05D005251 ORTHO05D006680 6.4e-24 116.7 182 37.9
BcaNung03955 Brassica carinata HOM05D005251 ORTHO05D006680 6.4e-24 116.7 182 37.9
vmacro17242 Vaccinium macrocarpon HOM05D005251 ORTHO05D006680 1.1e-23 115.9 84 60.7
MD15G1207700 Malus domestica HOM05D005251 ORTHO05D006680 1.4e-23 115.5 140 42.1
VMungo1383G3543 Vigna mungo HOM05D005251 ORTHO05D006680 7.1e-23 113.2 229 31.9
MCO16G282 Micromonas commoda HOM05D005251 ORTHO05D006680 1.2e-22 112.5 351 27.9
Cre07.g338800 Chlamydomonas reinhardtii HOM05D005251 ORTHO05D006680 1.7e-21 108.6 162 38.3
Cre07.g338700 Chlamydomonas reinhardtii HOM05D005251 ORTHO05D006680 5.1e-21 107.1 162 38.3
BcaNung02829 Brassica carinata HOM05D005251 ORTHO05D019858 3.3e-20 104.4 132 44.7
Sopen05g023240 Solanum pennellii HOM05D005251 ORTHO05D006680 7.3e-20 103.2 83 54.2
Duzib168G1322 Durio zibethinus HOM05D005251 ORTHO05D006680 2.8e-19 101.3 266 27.8
C07p41650 Brassica napus HOM05D005251 ORTHO05D019858 4.8e-19 100.5 154 39.0
vmacro17238 Vaccinium macrocarpon HOM05D005251 ORTHO05D006680 1.1e-18 99.4 140 37.9
BolC7t44699H Brassica oleracea HOM05D005251 ORTHO05D019858 4.0e-18 97.4 145 40.7
C06p07120 Brassica napus HOM05D005251 ORTHO05D006680 9.9e-17 92.8 119 44.5
Nitab4.5_0000540g0330 Nicotiana tabacum HOM05D005251 ORTHO05D006680 6.4e-16 90.1 86 48.8
Solyc05g032650.3 Solanum lycopersicum HOM05D005251 ORTHO05D006680 2.1e-14 85.1 130 36.2
HPP92_018388 Vanilla planifolia HOM05D003636 ORTHO05D005160 1.3e-13 82.4 220 26.4
Zm00001eb056720 Zea mays HOM05D003636 ORTHO05D005160 1.1e-12 79.3 222 25.7
Os03g0740700 Oryza sativa ssp. japonica HOM05D003636 ORTHO05D005160 1.3e-11 75.9 223 24.7
CBR_g41119 Chara braunii HOM05D003636 ORTHO05D005160 1.4e-10 72.4 230 23.9
CARHR289840 Cardamine hirsuta HOM05D003636 ORTHO05D005160 1.8e-10 72.0 231 24.2
Psat0s986g0040 Pisum sativum HOM05D003636 ORTHO05D005160 3.1e-10 71.2 221 25.3
MCO13G162 Micromonas commoda HOM05D003636 ORTHO05D005160 4.0e-10 70.9 202 28.2
Pp3c6_28790 Physcomitrium patens HOM05D003636 ORTHO05D005160 5.3e-10 70.5 224 26.8
vmacro22302 Vaccinium macrocarpon HOM05D005251 ORTHO05D006680 6.9e-10 70.1 83 43.4
Glyma.10G264200 Glycine max HOM05D003636 ORTHO05D005160 1.5e-09 68.9 221 24.4
Glyma.20G126100 Glycine max HOM05D003636 ORTHO05D005160 1.5e-09 68.9 221 24.4
Prupe.1G031700 Prunus persica HOM05D003636 ORTHO05D005160 1.5e-09 68.9 227 24.2
VMungo0720G2747 Vigna mungo HOM05D003636 ORTHO05D005160 7.6e-09 66.6 221 24.4
arahy.Tifrunner.gnm1.ann1.7RJ7GD Arachis hypogaea HOM05D003636 ORTHO05D005160 9.9e-09 66.2 221 23.5
arahy.Tifrunner.gnm1.ann1.T9EQBK Arachis hypogaea HOM05D003636 ORTHO05D005160 1.7e-08 65.5 221 23.5
Ca_11090_v3 Cicer arietinum L. HOM05D003636 ORTHO05D005160 1.7e-08 65.5 221 23.5
SMO356G0642 Selaginella moellendorffii HOM05D003636 ORTHO05D005160 1.7e-08 65.5 230 25.7
Ca_11092_v3 Cicer arietinum L. HOM05D003636 ORTHO05D005160 2.2e-08 65.1 221 23.5
MD13G1208100 Malus domestica HOM05D003636 ORTHO05D005160 2.2e-08 65.1 227 23.3
Dinv44639 Davidia involucrata HOM05D003636 ORTHO05D005160 2.9e-08 64.7 227 24.2
Manes.02G210300 Manihot esculenta HOM05D003636 ORTHO05D005160 2.9e-08 64.7 228 24.1
FAN17G1850 Fragaria x ananassa HOM05D003636 ORTHO05D005160 3.8e-08 64.3 227 23.3
Medtr1g107575 Medicago truncatula HOM05D003636 ORTHO05D005160 3.8e-08 64.3 227 24.7
Cre17.g741550 Chlamydomonas reinhardtii HOM05D003636 ORTHO05D005160 6.4e-08 63.5 219 25.1
RcHm_v2.0_Chr4g0390791 Rosa chinensis HOM05D003636 ORTHO05D005160 6.4e-08 63.5 227 23.3
Phvul.007G037800 Phaseolus vulgaris HOM05D003636 ORTHO05D005160 1.1e-07 62.8 221 23.1
RcHm_v2.0_Chr5g0000461 Rosa chinensis HOM05D003636 ORTHO05D005160 1.1e-07 62.8 227 23.3
Lj2g0003499 Lotus japonicus HOM05D003636 ORTHO05D005160 7.1e-07 60.1 221 23.1
TPR.G13854 Trifolium pratense HOM05D003636 ORTHO05D005160 7.1e-07 60.1 227 23.8
Lj5g0001808 Lotus japonicus HOM05D003636 ORTHO05D005160 1.2e-06 59.3 221 23.1


User provided reference genes

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