Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO271G0101 Selaginella moellendorffii HOM05D005375 ORTHO05D006598 1.9e-246 855.5 473 100.0
CSS0021148 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 1.5e-86 324.3 419 49.2
ATR1101G026 Amborella trichopoda HOM05D005375 ORTHO05D006598 4.5e-86 322.8 430 47.7
SGA_v2.0_scaffold8G04388 Striga asiatica HOM05D005375 ORTHO05D006598 9.9e-86 321.6 436 46.8
CSS0031566 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 1.1e-84 318.2 437 52.2
Nitab4.5_0004445g0070 Nicotiana tabacum HOM05D005375 ORTHO05D006598 3.2e-84 316.6 428 45.8
HanXRQChr03g0076881 Helianthus annuus HOM05D005375 ORTHO05D006598 4.2e-84 316.2 436 49.5
Rhsim06G0223700 Rhododendron simsii HOM05D005375 ORTHO05D006598 5.4e-84 315.8 422 48.6
Nitab4.5_0001160g0010 Nicotiana tabacum HOM05D005375 ORTHO05D006598 9.3e-84 315.1 437 48.5
PGSC0003DMG400022298 Solanum tuberosum HOM05D005375 ORTHO05D006598 1.6e-83 314.3 420 49.0
Migut.M01705 Erythranthe guttata HOM05D005375 ORTHO05D006598 4.6e-83 312.8 434 44.7
Manes.03G136300 Manihot esculenta HOM05D005375 ORTHO05D006598 1.8e-82 310.8 448 48.4
Nitab4.5_0007749g0010 Nicotiana tabacum HOM05D005375 ORTHO05D006598 1.8e-82 310.8 435 50.6
Thecc.07G027900 Theobroma cacao HOM05D005375 ORTHO05D006598 1.8e-82 310.8 427 47.8
CAN.G337.55 Capsicum annuum HOM05D005375 ORTHO05D006598 3.9e-82 309.7 445 48.5
Ciclev10008309m.g Citrus clementina HOM05D005375 ORTHO05D006598 5.1e-82 309.3 450 49.3
ClCG10G005050 Citrullus lanatus HOM05D005375 ORTHO05D006598 1.5e-81 307.8 473 42.3
Nitab4.5_0005078g0020 Nicotiana tabacum HOM05D005375 ORTHO05D006598 1.5e-81 307.8 428 46.5
Gohir.A04G011700 Gossypium hirsutum HOM05D005375 ORTHO05D006598 1.9e-81 307.4 433 45.7
Gohir.D05G374900 Gossypium hirsutum HOM05D005375 ORTHO05D006598 2.5e-81 307.0 433 45.5
Gorai.009G443800 Gossypium raimondii HOM05D005375 ORTHO05D006598 3.3e-81 306.6 433 45.5
CSS0047507 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 9.6e-81 305.1 420 46.7
TAR627G0180 Trochodendron aralioides HOM05D005375 ORTHO05D006598 9.6e-81 305.1 437 47.4
MSTRG.12999 Avicennia marina HOM05D005375 ORTHO05D006598 1.3e-80 304.7 435 48.0
Duzib170G0122 Durio zibethinus HOM05D005375 ORTHO05D006598 1.6e-80 304.3 427 48.9
QL08p007584 Quercus lobata HOM05D005375 ORTHO05D006598 1.6e-80 304.3 440 48.4
MSTRG.6961 Avicennia marina HOM05D005375 ORTHO05D006598 2.1e-80 303.9 439 44.9
AUR62015884 Chenopodium quinoa HOM05D005375 ORTHO05D006598 2.8e-80 303.5 455 44.6
Dinv22229 Davidia involucrata HOM05D005375 ORTHO05D006598 2.8e-80 303.5 420 52.4
Pp3c12_1420 Physcomitrium patens HOM05D005375 ORTHO05D006598 2.8e-80 303.5 456 48.2
ECA240G0086 Erigeron canadensis HOM05D005375 ORTHO05D006598 3.7e-80 303.1 442 50.2
Mapoly0043s0080 Marchantia polymorpha HOM05D005375 ORTHO05D006598 3.7e-80 303.1 498 43.4
AUR62020339 Chenopodium quinoa HOM05D005375 ORTHO05D006598 8.1e-80 302.0 444 46.6
HanXRQChr13g0408271 Helianthus annuus HOM05D005375 ORTHO05D006598 8.1e-80 302.0 447 44.7
PSO210G0227 Papaver somniferum HOM05D005375 ORTHO05D006598 1.1e-79 301.6 457 51.2
TAR629G0374 Trochodendron aralioides HOM05D005375 ORTHO05D006598 1.1e-79 301.6 425 44.7
SEGI_32868 Sequoiadendron giganteum HOM05D005375 ORTHO05D006598 1.4e-79 301.2 483 42.9
MD03G1294800 Malus domestica HOM05D005375 ORTHO05D006598 1.8e-79 300.8 439 48.3
CsaV3_3G004730 Cucumis sativus L. HOM05D005375 ORTHO05D006598 2.4e-79 300.4 442 44.6
PSO302G0025 Papaver somniferum HOM05D005375 ORTHO05D006598 2.4e-79 300.4 453 49.7
CiPaw.11G194800 Carya illinoinensis HOM05D005375 ORTHO05D006598 6.9e-79 298.9 454 46.3
Carub.0007s1409 Capsella rubella HOM05D005375 ORTHO05D006598 9.0e-79 298.5 462 44.6
TWI38G0072 Tripterygium wilfordii HOM05D005375 ORTHO05D006598 9.0e-79 298.5 441 44.9
Cc05_g14340 Coffea canephora HOM05D005375 ORTHO05D006598 1.5e-78 297.7 439 49.4
MELO3C014172.2 Cucumis melo HOM05D005375 ORTHO05D006598 1.5e-78 297.7 445 46.1
AL7G26080 Arabidopsis lyrata HOM05D005375 ORTHO05D006598 2.0e-78 297.4 454 46.3
Peaxi162Scf00235g00721 Petunia axillaris HOM05D005375 ORTHO05D006598 2.6e-78 297.0 435 49.7
Aqoxy1G04123 Aquilegia oxysepala HOM05D005375 ORTHO05D006598 4.5e-78 296.2 459 44.7
CDE07G0643 Ceratophyllum demersum HOM05D005375 ORTHO05D006598 9.9e-78 295.0 432 45.8
vmacro22307 Vaccinium macrocarpon HOM05D005375 ORTHO05D006598 9.9e-78 295.0 482 43.6
Sp7g24730 Schrenkiella parvula HOM05D005375 ORTHO05D006598 1.7e-77 294.3 456 43.0
Solyc07g064980.3 Solanum lycopersicum HOM05D005375 ORTHO05D006598 2.9e-77 293.5 424 46.9
Atru.chr2.3534 Acer truncatum HOM05D005375 ORTHO05D006598 4.9e-77 292.7 442 47.3
Potri.011G082000 Populus trichocarpa HOM05D005375 ORTHO05D006598 4.9e-77 292.7 456 45.4
THA.LOC104811633 Tarenaya hassleriana HOM05D005375 ORTHO05D006598 1.9e-76 290.8 433 46.0
Migut.H01791 Erythranthe guttata HOM05D005375 ORTHO05D006598 3.2e-76 290.0 418 45.7
Duzib268G0742 Durio zibethinus HOM05D005375 ORTHO05D006598 4.2e-76 289.7 437 49.7
Sopen07g033190 Solanum pennellii HOM05D005375 ORTHO05D006598 4.2e-76 289.7 433 48.5
CARHR234370 Cardamine hirsuta HOM05D005375 ORTHO05D006598 5.5e-76 289.3 433 45.3
Cfa020276 Carpinus fangiana HOM05D005375 ORTHO05D006598 5.5e-76 289.3 446 46.6
CDE04G3304 Ceratophyllum demersum HOM05D005375 ORTHO05D006598 5.5e-76 289.3 434 45.9
Atru.chr2.3553 Acer truncatum HOM05D005375 ORTHO05D006598 7.1e-76 288.9 435 49.4
Ca_06349_v3 Cicer arietinum L. HOM05D005375 ORTHO05D006598 7.1e-76 288.9 409 46.0
AT4G26750 Arabidopsis thaliana HOM05D005375 ORTHO05D006598 9.3e-76 288.5 462 43.1
EL10Ac4g07689 Beta vulgaris HOM05D005375 ORTHO05D006598 1.2e-75 288.1 445 48.1
Hma1.2p1_1332F.1_g276150 Hydrangea macrophylla HOM05D005375 ORTHO05D006598 1.2e-75 288.1 425 49.4
Dinv40796 Davidia involucrata HOM05D005375 ORTHO05D006598 3.5e-75 286.6 457 44.9
Sabra11G0065600 Salix brachista HOM05D005375 ORTHO05D006598 4.6e-75 286.2 481 43.7
Prupe.8G266900 Prunus persica HOM05D005375 ORTHO05D006598 7.9e-75 285.4 441 50.8
unitig_747.g21591 Utricularia gibba HOM05D005375 ORTHO05D006598 2.3e-74 283.9 424 45.8
MD00G1179000 Malus domestica HOM05D005375 ORTHO05D006598 3.9e-74 283.1 444 47.1
Glyma.02G295200 Glycine max HOM05D005375 ORTHO05D006598 5.6e-73 279.3 476 44.5
Phvul.008G272700 Phaseolus vulgaris HOM05D005375 ORTHO05D006598 5.6e-73 279.3 476 43.9
Glyma.14G018200 Glycine max HOM05D005375 ORTHO05D006598 7.4e-73 278.9 489 44.2
Lj6g0028194 Lotus japonicus HOM05D005375 ORTHO05D006598 7.4e-73 278.9 448 45.3
Aa31LG5G12180 Aethionema arabicum HOM05D005375 ORTHO05D006598 9.6e-73 278.5 459 44.7
FAN04G2161 Fragaria x ananassa HOM05D005375 ORTHO05D006598 1.3e-72 278.1 481 44.1
Gohir.A01G084800 Gossypium hirsutum HOM05D005375 ORTHO05D006598 1.3e-72 278.1 420 48.3
RcHm_v2.0_Chr7g0241441 Rosa chinensis HOM05D005375 ORTHO05D006598 1.6e-72 277.7 476 45.0
LjContig00272g0009776 Lotus japonicus HOM05D005375 ORTHO05D006598 2.1e-72 277.3 478 42.9
C01p22820 Brassica napus HOM05D000504 ORTHO05D006598 3.7e-72 276.6 447 49.0
FAN08G1518 Fragaria x ananassa HOM05D005375 ORTHO05D006598 8.2e-72 275.4 474 43.7
BolC1t02212H Brassica oleracea HOM05D005375 ORTHO05D006598 1.1e-71 275.0 439 50.6
BraA01t01755Z Brassica rapa HOM05D000504 ORTHO05D000403 1.4e-71 274.6 435 50.6
FAN13G1970 Fragaria x ananassa HOM05D005375 ORTHO05D006598 1.4e-71 274.6 473 42.3
Os06g0308800 Oryza sativa ssp. japonica HOM05D005375 ORTHO05D006598 1.4e-71 274.6 487 42.3
VMungo0647G1984 Vigna mungo HOM05D005375 ORTHO05D006598 1.4e-71 274.6 493 41.0
A01p18000 Brassica napus HOM05D000504 ORTHO05D000403 2.4e-71 273.9 437 49.2
Gorai.002G093900 Gossypium raimondii HOM05D005375 ORTHO05D006598 3.1e-71 273.5 420 47.6
Gohir.D01G071200 Gossypium hirsutum HOM05D005375 ORTHO05D006598 4.0e-71 273.1 420 47.6
FAN18G4382 Fragaria x ananassa HOM05D005375 ORTHO05D006598 6.9e-71 272.3 488 40.4
FvH4_5g39180 Fragaria vesca HOM05D005375 ORTHO05D006598 1.5e-70 271.2 474 43.0
CANSAT11G2127 Cannabis sativa HOM05D005375 ORTHO05D006598 2.6e-70 270.4 454 40.1
Lsat_1_v5_gn_9_90720 Lactuca sativa HOM05D005375 ORTHO05D006598 5.8e-70 269.2 443 47.2
DCAR_022591 Daucus carota HOM05D005375 ORTHO05D006598 1.0e-69 268.5 432 42.4
Eucgr.F03508 Eucalyptus grandis HOM05D005375 ORTHO05D006598 1.7e-69 267.7 481 41.6
Cpa.g.sc284.2 Carica papaya HOM05D005375 ORTHO05D006598 8.4e-69 265.4 155 80.6
Thhalv10025139m.g Eutrema salsugineum HOM05D005375 ORTHO05D006598 1.9e-68 264.2 433 47.8
TPR.G35360 Trifolium pratense HOM05D005375 ORTHO05D006598 3.2e-68 263.5 513 41.3
Psat2g009920 Pisum sativum HOM05D005375 ORTHO05D006598 1.6e-67 261.2 492 40.2
HPP92_015778 Vanilla planifolia HOM05D005375 ORTHO05D006598 2.1e-67 260.8 215 63.3
Sed0014032 Sechium edule HOM05D005375 ORTHO05D006598 1.0e-66 258.5 407 44.0
GSVIVG01037729001 Vitis vinifera HOM05D005375 ORTHO05D006598 2.3e-66 257.3 182 69.2
Lalb_Chr00c48g0412951 Lupinus albus HOM05D005375 ORTHO05D006598 8.7e-66 255.4 214 65.0
Lj8A173T72 Lonicera japonica HOM05D005375 ORTHO05D006598 1.9e-65 254.2 413 42.6
Lj1C881T5 Lonicera japonica HOM05D005375 ORTHO05D006598 4.3e-65 253.1 410 47.8
Medtr5g093880 Medicago truncatula HOM05D005375 ORTHO05D006598 4.3e-65 253.1 481 43.5
Actinidia05060 Actinidia chinensis HOM05D005375 ORTHO05D006598 5.7e-65 252.7 209 63.2
COL.COLO4_09738 Corchorus olitorius HOM05D005375 ORTHO05D006598 1.6e-64 251.1 415 42.9
Lalb_Chr04g0248131 Lupinus albus HOM05D005375 ORTHO05D006598 8.2e-64 248.8 505 42.8
TAR624G1027 Trochodendron aralioides HOM05D005375 ORTHO05D006598 8.2e-64 248.8 184 68.5
PGR031G3708 Punica granatum HOM05D005375 ORTHO05D006598 2.4e-63 247.3 443 44.5
Nn1g07350 Nelumbo nucifera HOM05D005375 ORTHO05D006598 1.7e-61 241.1 471 39.9
Zm00001eb281230 Zea mays HOM05D005375 ORTHO05D006598 4.6e-59 233.0 447 40.3
CSS0025851 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 8.8e-58 228.8 387 40.6
AagrBONN_evm.TU.Sc2ySwM_368.1760 Anthoceros agrestis HOM05D005375 ORTHO05D006598 7.4e-57 225.7 379 43.3
Oeu054311.1 Olea europaea HOM05D005375 ORTHO05D006598 4.4e-49 199.9 438 36.8
TWI39G0687 Tripterygium wilfordii HOM05D005375 ORTHO05D006598 7.4e-49 199.1 119 76.5
DCAR_016648 Daucus carota HOM05D005375 ORTHO05D006598 1.4e-47 194.9 387 37.0
BcaC09g52262 Brassica carinata HOM05D005375 ORTHO05D006598 4.2e-44 183.3 387 44.4
SHI26566 Sapria himalayana HOM05D005375 ORTHO05D006598 3.0e-42 177.2 497 32.8
PGR031G2801 Punica granatum HOM05D005375 ORTHO05D006598 1.1e-41 175.3 356 41.6
CBR_g50394 Chara braunii HOM05D005375 ORTHO05D006598 1.5e-41 174.9 409 35.9
Lalb_Chr00c48g0413001 Lupinus albus HOM05D005375 ORTHO05D006598 6.3e-40 169.5 156 58.3
Haze_09747 Corylus avellana HOM05D005375 ORTHO05D006598 1.6e-38 164.9 447 38.9
Cre03.g145227 Chlamydomonas reinhardtii HOM05D005375 ORTHO05D006598 1.3e-37 161.8 162 51.2
PRCOL_00004002 Prasinoderma coloniale HOM05D005375 ORTHO05D006598 4.7e-35 153.3 155 51.6
Actinidia32285 Actinidia chinensis HOM05D005375 ORTHO05D006598 6.7e-34 149.4 188 46.8
Sc16g0005720 Simmondsia chinensis HOM05D005375 ORTHO05D006598 4.4e-33 146.7 339 37.5
MCO03G124 Micromonas commoda HOM05D005375 ORTHO05D006598 2.9e-29 134.0 145 45.5
Nn1g03334 Nelumbo nucifera HOM05D005375 ORTHO05D006598 7.2e-28 129.4 388 31.2
Actinidia37374 Actinidia chinensis HOM05D005375 ORTHO05D006598 2.7e-22 110.9 63 77.8
Hund23196 Selenicereus undatus HOM05D005375 ORTHO05D006598 6.8e-18 96.3 97 54.6
Ah.06g182230 Amaranthus hybridus HOM05D005375 ORTHO05D006598 1.2e-17 95.5 55 80.0
MCO09G798 Micromonas commoda HOM05D005375 ORTHO05D006598 4.1e-15 87.0 223 31.4
CAN.G396.4 Capsicum annuum HOM05D005375 ORTHO05D006598 1.6e-14 85.1 102 46.1
CAN.G4023.1 Capsicum annuum HOM05D005375 ORTHO05D006598 1.6e-14 85.1 102 46.1
C08p09960 Brassica napus HOM05D000504 ORTHO05D000403 5.0e-13 80.1 60 66.7
BolC8t48673H Brassica oleracea HOM05D000504 ORTHO05D000403 5.0e-13 80.1 60 66.7
CAN.G396.14 Capsicum annuum HOM05D005375 ORTHO05D006598 1.1e-12 79.0 50 72.0
TAR624G1433 Trochodendron aralioides HOM05D005375 ORTHO05D006598 3.3e-12 77.4 48 75.0
PGR044G1312 Punica granatum HOM05D003929 ORTHO05D004499 1.4e-10 72.0 47 70.2
Actinidia20957 Actinidia chinensis HOM05D005375 ORTHO05D006598 3.1e-10 70.9 88 47.7
Zm00001eb381490 Zea mays HOM05D005375 ORTHO05D006598 5.8e-09 66.6 124 40.3


User provided reference genes

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