Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO239G0197 Selaginella moellendorffii HOM05D003950 ORTHO05D004697 1.4e-98 363.6 202 100.0
AagrBONN_evm.TU.Sc2ySwM_344.2926 Anthoceros agrestis HOM05D003950 ORTHO05D004697 4.1e-50 202.6 189 64.0
COL.COLO4_28614 Corchorus olitorius HOM05D003950 ORTHO05D004697 7.8e-49 198.4 189 61.4
Thecc.05G244400 Theobroma cacao HOM05D003950 ORTHO05D004697 5.1e-48 195.7 189 61.9
arahy.Tifrunner.gnm1.ann1.DJK1GU Arachis hypogaea HOM05D003950 ORTHO05D004697 1.5e-47 194.1 189 60.3
Glyma.05G089400 Glycine max HOM05D003950 ORTHO05D004697 4.3e-47 192.6 190 60.5
Haze_20442 Corylus avellana HOM05D003950 ORTHO05D004697 7.3e-47 191.8 183 62.3
Psat1g090600 Pisum sativum HOM05D003950 ORTHO05D004697 7.3e-47 191.8 189 59.8
Gohir.D08G236500 Gossypium hirsutum HOM05D003950 ORTHO05D004697 9.5e-47 191.4 185 58.9
Gorai.004G251700 Gossypium raimondii HOM05D003950 ORTHO05D004697 1.2e-46 191.0 189 58.7
Hma1.2p1_2382F.1_g321070 Hydrangea macrophylla HOM05D003950 ORTHO05D004697 1.2e-46 191.0 189 60.3
Cfa017695 Carpinus fangiana HOM05D003950 ORTHO05D004697 1.6e-46 190.7 189 60.8
Ciclev10021370m.g Citrus clementina HOM05D003950 ORTHO05D004697 1.6e-46 190.7 189 60.3
Dinv25063 Davidia involucrata HOM05D003950 ORTHO05D004697 1.6e-46 190.7 190 59.5
Cc06_g17190 Coffea canephora HOM05D003950 ORTHO05D004697 2.1e-46 190.3 189 59.8
RcHm_v2.0_Chr3g0496431 Rosa chinensis HOM05D003950 ORTHO05D004697 2.1e-46 190.3 189 59.3
THA.LOC104821454 Tarenaya hassleriana HOM05D003950 ORTHO05D004697 2.1e-46 190.3 189 59.3
CiPaw.10G125600 Carya illinoinensis HOM05D003950 ORTHO05D004697 6.2e-46 188.7 191 61.8
MD12G1008500 Malus domestica HOM05D003950 ORTHO05D004697 6.2e-46 188.7 189 59.8
Sed0018840 Sechium edule HOM05D003950 ORTHO05D004697 8.1e-46 188.3 189 59.3
FvH4_1g28440 Fragaria vesca HOM05D003950 ORTHO05D004697 1.8e-45 187.2 189 58.7
Lsat_1_v5_gn_1_56021 Lactuca sativa HOM05D003950 ORTHO05D004697 6.8e-45 185.3 189 58.7
CAN.G959.52 Capsicum annuum HOM05D003950 ORTHO05D004697 8.9e-45 184.9 189 58.2
Actinidia37803 Actinidia chinensis HOM05D003950 ORTHO05D004697 1.2e-44 184.5 189 58.7
Gohir.A08G219600 Gossypium hirsutum HOM05D003950 ORTHO05D004697 1.2e-44 184.5 180 59.4
Lalb_Chr06g0174111 Lupinus albus HOM05D003950 ORTHO05D004697 1.2e-44 184.5 184 60.3
Rhsim03G0052400 Rhododendron simsii HOM05D003950 ORTHO05D004697 1.2e-44 184.5 186 59.1
CsaV3_4G012140 Cucumis sativus L. HOM05D003950 ORTHO05D004697 1.5e-44 184.1 189 57.7
Gohir.A13G164200 Gossypium hirsutum HOM05D003950 ORTHO05D004697 1.5e-44 184.1 189 54.5
Actinidia03936 Actinidia chinensis HOM05D003950 ORTHO05D004697 2.0e-44 183.7 189 58.7
DCAR_016963 Daucus carota HOM05D003950 ORTHO05D004697 2.0e-44 183.7 189 56.6
Phvul.004G074000 Phaseolus vulgaris HOM05D003950 ORTHO05D004697 2.6e-44 183.3 189 60.3
Ca_25687_v3 Cicer arietinum L. HOM05D003950 ORTHO05D004697 3.4e-44 183.0 188 59.0
GSVIVG01029976001 Vitis vinifera HOM05D003950 ORTHO05D004697 3.4e-44 183.0 190 58.4
VMungo0464G0013 Vigna mungo HOM05D003950 ORTHO05D004697 4.4e-44 182.6 185 58.9
Atru.chr2.1469 Acer truncatum HOM05D003950 ORTHO05D004697 5.8e-44 182.2 189 58.7
CDE07G1488 Ceratophyllum demersum HOM05D003950 ORTHO05D004697 5.8e-44 182.2 188 55.9
MSTRG.26559 Avicennia marina HOM05D003950 ORTHO05D004697 9.9e-44 181.4 189 57.7
Medtr6g027790 Medicago truncatula HOM05D003950 ORTHO05D004697 9.9e-44 181.4 189 57.7
Sopen10g028540 Solanum pennellii HOM05D003950 ORTHO05D004697 9.9e-44 181.4 189 56.6
CANSAT78G2427 Cannabis sativa HOM05D003950 ORTHO05D004697 1.3e-43 181.0 189 57.1
HanXRQChr01g0026431 Helianthus annuus HOM05D003950 ORTHO05D004697 1.7e-43 180.6 188 57.4
PSO339G3097 Papaver somniferum HOM05D003950 ORTHO05D004697 1.7e-43 180.6 193 58.0
QL07p017761 Quercus lobata HOM05D003950 ORTHO05D004697 2.2e-43 180.3 173 61.8
Solyc10g076860.2 Solanum lycopersicum HOM05D003950 ORTHO05D004697 2.2e-43 180.3 189 56.1
ClCG04G005440 Citrullus lanatus HOM05D003950 ORTHO05D004697 4.9e-43 179.1 189 58.7
BcaC01g06335 Brassica carinata HOM05D003950 ORTHO05D004697 6.4e-43 178.7 189 58.7
FAN23G1412 Fragaria x ananassa HOM05D003950 ORTHO05D004697 8.3e-43 178.3 180 58.9
Hund15115 Selenicereus undatus HOM05D000185 ORTHO05D000105 1.4e-42 177.6 213 49.8
TWI60G1471 Tripterygium wilfordii HOM05D003950 ORTHO05D004697 1.4e-42 177.6 189 57.1
ECA248G3680 Erigeron canadensis HOM05D003950 ORTHO05D004697 1.9e-42 177.2 189 57.1
arahy.Tifrunner.gnm1.ann1.3ZLA4U Arachis hypogaea HOM05D001335 ORTHO05D001184 3.2e-42 176.4 192 57.3
Eucgr.A02129 Eucalyptus grandis HOM05D003950 ORTHO05D004697 3.2e-42 176.4 190 56.3
A03p14340 Brassica napus HOM05D003950 ORTHO05D004697 5.4e-42 175.6 188 58.0
BraA03t10731Z Brassica rapa HOM05D003950 ORTHO05D004697 5.4e-42 175.6 188 58.0
BolC3t14092H Brassica oleracea HOM05D003950 ORTHO05D004697 7.1e-42 175.3 189 57.7
Gorai.013G195400 Gossypium raimondii HOM05D003950 ORTHO05D004697 7.1e-42 175.3 200 55.0
MELO3C008816.2 Cucumis melo HOM05D003950 ORTHO05D004697 9.2e-42 174.9 188 55.3
Sp6g16940 Schrenkiella parvula HOM05D003950 ORTHO05D004697 9.2e-42 174.9 189 57.1
Migut.J00770 Erythranthe guttata HOM05D003950 ORTHO05D004697 1.2e-41 174.5 186 56.5
SGA_v2.0_scaffold31G12791 Striga asiatica HOM05D003950 ORTHO05D004697 1.2e-41 174.5 208 53.4
Pp3c19_3550 Physcomitrium patens HOM05D003950 ORTHO05D004697 1.6e-41 174.1 128 68.0
ATR0697G272 Amborella trichopoda HOM05D003950 ORTHO05D004697 2.7e-41 173.3 161 64.0
CDE06G0557 Ceratophyllum demersum HOM05D003950 ORTHO05D004697 2.7e-41 173.3 179 56.4
Potri.019G038400 Populus trichocarpa HOM05D003950 ORTHO05D004697 3.5e-41 172.9 189 55.6
C03p16720 Brassica napus HOM05D003950 ORTHO05D004697 4.6e-41 172.6 190 56.8
MD14G1005800 Malus domestica HOM05D003950 ORTHO05D004697 7.8e-41 171.8 156 64.7
CARHR268340 Cardamine hirsuta HOM05D003950 ORTHO05D004697 1.3e-40 171.0 190 54.7
TPR.G29869 Trifolium pratense HOM05D003950 ORTHO05D004697 3.9e-40 169.5 169 59.2
Cpa.g.sc161.15 Carica papaya HOM05D003950 ORTHO05D004697 1.9e-39 167.2 164 61.0
Thhalv10014237m.g Eutrema salsugineum HOM05D003950 ORTHO05D004697 2.5e-39 166.8 191 56.0
AL8G30470 Arabidopsis lyrata HOM05D003950 ORTHO05D004697 3.3e-39 166.4 180 57.8
FAN28G2715 Fragaria x ananassa HOM05D003950 ORTHO05D004697 4.3e-39 166.0 166 58.4
Manes.09G138000 Manihot esculenta HOM05D003950 ORTHO05D004697 4.3e-39 166.0 170 59.4
AT5G55000 Arabidopsis thaliana HOM05D003950 ORTHO05D004697 5.6e-39 165.6 179 57.5
CSS0049440 Camellia sinensis var. sinensis HOM05D003950 ORTHO05D004697 5.6e-39 165.6 189 53.4
Nitab4.5_0002131g0010 Nicotiana tabacum HOM05D003950 ORTHO05D004697 5.6e-39 165.6 181 55.2
HanXRQChr11g0347981 Helianthus annuus HOM05D003950 ORTHO05D004697 1.6e-38 164.1 192 55.2
Carub.0008s1529 Capsella rubella HOM05D003950 ORTHO05D004697 2.1e-38 163.7 180 57.2
Aqoxy1G00539 Aquilegia oxysepala HOM05D003950 ORTHO05D004697 8.1e-38 161.8 168 57.7
CANSAT78G2379 Cannabis sativa HOM05D003950 ORTHO05D004697 8.1e-38 161.8 161 59.0
Nitab4.5_0000121g0060 Nicotiana tabacum HOM05D003950 ORTHO05D004697 1.1e-37 161.4 194 53.1
EL10Ac1g01242 Beta vulgaris HOM05D003950 ORTHO05D004697 1.8e-37 160.6 153 60.1
Zm00001eb403220 Zea mays HOM05D003950 ORTHO05D004697 2.4e-37 160.2 163 57.7
Nn6g32388 Nelumbo nucifera HOM05D003950 ORTHO05D004697 5.2e-37 159.1 179 54.7
AUR62027738 Chenopodium quinoa HOM05D003950 ORTHO05D004697 8.9e-37 158.3 156 61.5
HanXRQChr11g0348201 Helianthus annuus HOM05D003950 ORTHO05D004697 1.2e-36 157.9 186 50.5
Potri.013G062500 Populus trichocarpa HOM05D003950 ORTHO05D004697 1.2e-36 157.9 189 52.9
Sabra19G0049600 Salix brachista HOM05D003950 ORTHO05D004697 2.0e-36 157.1 181 49.2
unitig_899.g15193 Utricularia gibba HOM05D003950 ORTHO05D004697 2.0e-36 157.1 175 54.3
Mapoly0001s0409 Marchantia polymorpha HOM05D003950 ORTHO05D004697 3.4e-36 156.4 158 58.9
Sc07g0007800 Simmondsia chinensis HOM05D003950 ORTHO05D004697 5.8e-36 155.6 135 57.0
Os10g0438000 Oryza sativa ssp. japonica HOM05D003950 ORTHO05D004697 1.9e-34 150.6 193 51.8
Gohir.D13G167037 Gossypium hirsutum HOM05D003950 ORTHO05D004697 3.2e-34 149.8 131 57.3
vmacro07558 Vaccinium macrocarpon HOM05D003950 ORTHO05D004697 4.2e-34 149.4 148 59.5
MSTRG.10428 Avicennia marina HOM05D003950 ORTHO05D004697 9.3e-34 148.3 165 55.8
Dinv05569 Davidia involucrata HOM05D003950 ORTHO05D004697 9.3e-34 148.3 151 59.6
SalBow3G0657 Salvia bowleyana HOM05D003950 ORTHO05D004697 2.1e-33 147.1 135 55.6
TAR623G1392 Trochodendron aralioides HOM05D003950 ORTHO05D004697 2.1e-33 147.1 148 59.5
Aa31LG2G1860 Aethionema arabicum HOM05D003950 ORTHO05D004697 3.5e-33 146.4 163 56.4
CSS0011085 Camellia sinensis var. sinensis HOM05D003950 ORTHO05D004697 1.3e-32 144.4 226 44.2
Os03g0157500 Oryza sativa ssp. japonica HOM05D003950 ORTHO05D004697 2.3e-32 143.7 129 55.8
BcaC01g06337 Brassica carinata HOM05D003950 ORTHO05D004697 5.1e-32 142.5 135 56.3
HanXRQChr11g0348521 Helianthus annuus HOM05D003950 ORTHO05D004697 8.7e-32 141.7 175 52.0
AUR62018910 Chenopodium quinoa HOM05D003950 ORTHO05D004697 7.3e-31 138.7 184 50.5
HPP92_027838 Vanilla planifolia HOM05D003950 ORTHO05D004697 9.6e-31 138.3 129 56.6
HanXRQChr11g0348221 Helianthus annuus HOM05D003950 ORTHO05D004697 1.6e-30 137.5 133 56.4
Prupe.7G009900 Prunus persica HOM05D003950 ORTHO05D004697 4.8e-30 136.0 128 62.5
FAN17G2887 Fragaria x ananassa HOM05D003950 ORTHO05D004697 1.4e-29 134.4 164 53.7
HanXRQChr11g0348261 Helianthus annuus HOM05D003950 ORTHO05D004697 1.4e-29 134.4 176 48.3
Lj1A1064G32 Lonicera japonica HOM05D003950 ORTHO05D004697 3.1e-29 133.3 206 38.8
MD03G1043800 Malus domestica HOM05D003950 ORTHO05D004697 3.1e-29 133.3 167 48.5
MD03G1047000 Malus domestica HOM05D003950 ORTHO05D004697 6.9e-29 132.1 135 56.3
Sabra13G0055700 Salix brachista HOM05D003950 ORTHO05D004697 6.9e-29 132.1 220 39.1
HanXRQChr11g0347951 Helianthus annuus HOM05D003950 ORTHO05D004697 1.5e-28 131.0 117 59.8
HanXRQChr11g0348211 Helianthus annuus HOM05D003950 ORTHO05D004697 1.3e-27 127.9 162 52.5
HanXRQChr11g0347961 Helianthus annuus HOM05D003950 ORTHO05D004697 4.9e-27 125.9 113 59.3
RcHm_v2.0_Chr5g0074451 Rosa chinensis HOM05D003950 ORTHO05D004697 6.4e-27 125.6 173 48.6
HanXRQChr11g0347991 Helianthus annuus HOM05D003950 ORTHO05D004697 1.9e-26 124.0 112 58.0
Duzib177G0442 Durio zibethinus HOM05D003950 ORTHO05D004697 2.4e-26 123.6 188 43.1
Prupe.6G036000 Prunus persica HOM05D003950 ORTHO05D004697 3.2e-26 123.2 158 51.9
PSO384G0364 Papaver somniferum HOM05D003950 ORTHO05D004697 4.2e-26 122.9 189 43.4
MD03G1044000 Malus domestica HOM05D003950 ORTHO05D004697 3.5e-25 119.8 140 51.4
Pp3c22_8540 Physcomitrium patens HOM05D003950 ORTHO05D004697 1.0e-24 118.2 177 46.3
MD03G1043900 Malus domestica HOM05D003950 ORTHO05D004697 5.1e-24 115.9 182 47.3
MD11G1047200 Malus domestica HOM05D003950 ORTHO05D004697 6.6e-24 115.5 131 48.9
Gohir.A08G219522 Gossypium hirsutum HOM05D003950 ORTHO05D004697 1.9e-23 114.0 155 43.9
HanXRQChr11g0348281 Helianthus annuus HOM05D003950 ORTHO05D004697 9.6e-23 111.7 129 56.6
Pp3c22_8500 Physcomitrium patens HOM05D003950 ORTHO05D004697 9.6e-23 111.7 189 44.4
HanXRQChr11g0347971 Helianthus annuus HOM05D003950 ORTHO05D004697 1.3e-22 111.3 121 55.4
arahy.Tifrunner.gnm1.ann1.Y4106G Arachis hypogaea HOM05D003950 ORTHO05D004697 1.8e-21 107.5 85 63.5
AUR62043941 Chenopodium quinoa HOM05D003950 ORTHO05D004697 1.8e-21 107.5 132 53.8
FAN11G2374 Fragaria x ananassa HOM05D003950 ORTHO05D004697 3.1e-21 106.7 174 40.2
FAN11G3501 Fragaria x ananassa HOM05D003950 ORTHO05D004697 4.0e-21 106.3 157 43.9
arahy.Tifrunner.gnm1.ann1.NAY1Y6 Arachis hypogaea HOM05D003950 ORTHO05D004697 5.3e-21 105.9 85 62.4
FvH4_3g41510 Fragaria vesca HOM05D003950 ORTHO05D004697 9.0e-21 105.1 145 45.5
FvH4_4g13720 Fragaria vesca HOM05D003950 ORTHO05D004697 2.0e-20 104.0 130 46.9
FvH4_3g41490 Fragaria vesca HOM05D003950 ORTHO05D004697 2.6e-20 103.6 136 45.6
FAN19G2544 Fragaria x ananassa HOM05D003950 ORTHO05D004697 3.4e-20 103.2 83 63.9
SEGI_22625 Sequoiadendron giganteum HOM05D003950 ORTHO05D004697 2.9e-19 100.1 83 63.9
FvH4_6g31590 Fragaria vesca HOM05D003950 ORTHO05D004697 3.8e-19 99.8 111 48.6
Pp3c19_20680 Physcomitrium patens HOM05D003950 ORTHO05D004697 4.9e-19 99.4 106 50.9
FAN25G1848 Fragaria x ananassa HOM05D003950 ORTHO05D004697 6.4e-19 99.0 146 43.2
FAN13G1636 Fragaria x ananassa HOM05D003950 ORTHO05D004697 8.4e-19 98.6 177 39.5
arahy.Tifrunner.gnm1.ann1.045CRL Arachis hypogaea HOM05D003950 ORTHO05D004697 1.1e-18 98.2 95 53.7
FAN05G4552 Fragaria x ananassa HOM05D003950 ORTHO05D004697 2.4e-18 97.1 195 37.9
FAN21G2807 Fragaria x ananassa HOM05D003950 ORTHO05D004697 2.1e-17 94.0 145 42.8
Pp3c3_29270 Physcomitrium patens HOM05D003950 ORTHO05D004697 1.0e-16 91.7 194 39.2
SEGI_36015 Sequoiadendron giganteum HOM05D003950 ORTHO05D004697 1.8e-16 90.9 64 70.3
arahy.Tifrunner.gnm1.ann1.F7GYSS Arachis hypogaea HOM05D003950 ORTHO05D004697 3.0e-16 90.1 71 62.0
Pp3c22_3970 Physcomitrium patens HOM05D003950 ORTHO05D004697 1.9e-15 87.4 158 44.3
Pp3c22_8490 Physcomitrium patens HOM05D003950 ORTHO05D004697 1.1e-13 81.6 106 45.3
RcHm_v2.0_Chr5g0074441 Rosa chinensis HOM05D003950 ORTHO05D004697 1.2e-12 78.2 86 52.3
MD03G1035600 Malus domestica HOM05D003950 ORTHO05D004697 2.6e-12 77.0 175 42.3
arahy.Tifrunner.gnm1.ann1.ZT0L0Q Arachis hypogaea HOM05D003950 ORTHO05D004697 1.4e-10 71.2 53 64.2
arahy.Tifrunner.gnm1.ann1.FD1PW0 Arachis hypogaea HOM05D000879 ORTHO05D004697 9.3e-10 68.6 53 60.4
SEGI_15476 Sequoiadendron giganteum HOM05D003950 ORTHO05D004697 1.2e-09 68.2 104 45.2
RcHm_v2.0_Chr5g0074461 Rosa chinensis HOM05D003950 ORTHO05D004697 2.7e-09 67.0 77 49.4
CBR_g23172 Chara braunii HOM05D003950 ORTHO05D004697 4.6e-09 66.2 104 40.4
SMO356G0208 Selaginella moellendorffii HOM05D003950 ORTHO05D004697 3.0e-08 63.5 115 37.4
FvH4_3g41240 Fragaria vesca HOM05D003950 ORTHO05D004697 5.1e-08 62.8 126 34.9
FAN11G3220 Fragaria x ananassa HOM05D003950 ORTHO05D004697 5.1e-08 62.8 126 34.9
Cre13.g585250 Chlamydomonas reinhardtii HOM05D003950 ORTHO05D004697 6.7e-08 62.4 61 50.8
FAN13G2151 Fragaria x ananassa HOM05D003950 ORTHO05D004697 1.3e-06 58.2 64 48.4
Pp3c8_19020 Physcomitrium patens HOM05D003950 ORTHO05D004697 8.2e-06 55.5 61 45.9


User provided reference genes

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