Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO239G0082 Selaginella moellendorffii HOM05D004263 ORTHO05D004931 0.0e+00 1925.2 969 100.0
Mapoly0011s0120 Marchantia polymorpha HOM05D004263 ORTHO05D004931 4.0e-307 1058.1 997 55.6
TAR627G0082 Trochodendron aralioides HOM05D004263 ORTHO05D004931 8.8e-307 1057.0 977 54.1
Peaxi162Scf00255g01022 Petunia axillaris HOM05D004263 ORTHO05D004931 3.4e-306 1055.0 979 54.4
Pp3c14_1240 Physcomitrium patens HOM05D004263 ORTHO05D004931 4.9e-305 1051.2 1004 54.7
Solyc06g005080.4 Solanum lycopersicum HOM05D004263 ORTHO05D004931 4.9e-305 1051.2 977 53.9
Sopen06g001070 Solanum pennellii HOM05D004263 ORTHO05D004931 1.4e-304 1049.7 977 53.9
Ciclev10014147m.g Citrus clementina HOM05D004263 ORTHO05D004931 5.4e-304 1047.7 981 53.6
Aqoxy1G01192 Aquilegia oxysepala HOM05D004263 ORTHO05D004931 2.7e-303 1045.4 977 53.5
Actinidia39296 Actinidia chinensis HOM05D004263 ORTHO05D004931 4.5e-303 1044.6 979 53.7
THA.LOC104809434 Tarenaya hassleriana HOM05D004263 ORTHO05D004931 1.1e-301 1040.0 978 54.1
TWI75G0058 Tripterygium wilfordii HOM05D004263 ORTHO05D004931 1.9e-301 1039.3 990 53.4
CSS0002238 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 3.3e-301 1038.5 985 52.8
CSS0035503 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 3.3e-301 1038.5 978 53.0
CiPaw.03G169700 Carya illinoinensis HOM05D004263 ORTHO05D004931 5.6e-301 1037.7 988 53.0
SGA_v2.0_scaffold90G27889 Striga asiatica HOM05D004263 ORTHO05D004931 7.3e-301 1037.3 979 53.9
Hma1.2p1_0565F.1_g179560 Hydrangea macrophylla HOM05D004263 ORTHO05D004931 1.2e-300 1036.6 978 52.5
CANSAT64G2398 Cannabis sativa HOM05D004263 ORTHO05D004931 1.0e-299 1033.5 986 53.1
Gohir.A01G015400 Gossypium hirsutum HOM05D004263 ORTHO05D004931 5.2e-299 1031.2 987 52.7
vmacro09293 Vaccinium macrocarpon HOM05D004263 ORTHO05D004931 5.2e-299 1031.2 1014 52.3
Cc04_g12270 Coffea canephora HOM05D004263 ORTHO05D004931 2.0e-298 1029.2 996 52.4
RcHm_v2.0_Chr2g0161771 Rosa chinensis HOM05D004263 ORTHO05D004931 3.4e-298 1028.5 987 52.7
Gorai.002G017100 Gossypium raimondii HOM05D004263 ORTHO05D004931 4.4e-298 1028.1 987 52.7
Migut.O00120 Erythranthe guttata HOM05D004263 ORTHO05D004931 7.5e-298 1027.3 978 53.4
Manes.12G082900 Manihot esculenta HOM05D004263 ORTHO05D004931 7.5e-298 1027.3 981 52.4
A08p32810 Brassica napus HOM05D004263 ORTHO05D004931 9.8e-298 1026.9 988 52.4
Prupe.3G231000 Prunus persica HOM05D004263 ORTHO05D004931 9.8e-298 1026.9 990 53.3
PGR142G2990 Punica granatum HOM05D004263 ORTHO05D004931 1.7e-297 1026.2 988 52.8
COL.COLO4_13682 Corchorus olitorius HOM05D004263 ORTHO05D004931 2.9e-297 1025.4 978 52.6
Sp1g11070 Schrenkiella parvula HOM05D004263 ORTHO05D004931 2.9e-297 1025.4 979 52.9
Thhalv10006686m.g Eutrema salsugineum HOM05D004263 ORTHO05D004931 3.7e-297 1025.0 978 53.0
Lj3g0003932 Lotus japonicus HOM05D004263 ORTHO05D004931 3.7e-297 1025.0 988 52.5
FvH4_6g44560 Fragaria vesca HOM05D004263 ORTHO05D004931 1.1e-296 1023.5 990 52.3
Thecc.02G171500 Theobroma cacao HOM05D004263 ORTHO05D004931 1.1e-296 1023.5 987 52.7
Gohir.D01G015400 Gossypium hirsutum HOM05D004263 ORTHO05D004931 1.4e-296 1023.1 978 52.7
HanXRQChr07g0200651 Helianthus annuus HOM05D004263 ORTHO05D004931 1.8e-296 1022.7 980 52.0
Aa31LG1G2150 Aethionema arabicum HOM05D004263 ORTHO05D004931 2.4e-296 1022.3 986 53.3
Glyma.13G301100 Glycine max HOM05D004263 ORTHO05D004931 2.4e-296 1022.3 988 52.1
MD14G1065300 Malus domestica HOM05D004263 ORTHO05D004931 3.2e-296 1021.9 988 53.4
A06p09160 Brassica napus HOM05D004263 ORTHO05D004931 4.1e-296 1021.5 980 52.7
PSO801G0468 Papaver somniferum HOM05D004263 ORTHO05D004931 4.1e-296 1021.5 986 52.4
FAN14G1228 Fragaria x ananassa HOM05D004263 ORTHO05D004931 7.0e-296 1020.8 1009 51.6
Psat2g144400 Pisum sativum HOM05D004263 ORTHO05D004931 7.0e-296 1020.8 988 51.9
FAN02G3638 Fragaria x ananassa HOM05D004263 ORTHO05D004931 9.2e-296 1020.4 1006 51.6
FAN09G1275 Fragaria x ananassa HOM05D004263 ORTHO05D004931 9.2e-296 1020.4 1006 51.8
BcaB03g13185 Brassica carinata HOM05D004263 ORTHO05D004931 1.2e-295 1020.0 978 52.7
MD17G1084700 Malus domestica HOM05D004263 ORTHO05D004931 1.2e-295 1020.0 987 53.5
BolC5t29815H Brassica oleracea HOM05D004263 ORTHO05D004931 3.5e-295 1018.5 979 52.3
Carub.0001s1218 Capsella rubella HOM05D004263 ORTHO05D004931 3.5e-295 1018.5 979 52.2
GSVIVG01030005001 Vitis vinifera HOM05D004263 ORTHO05D004931 3.5e-295 1018.5 979 52.5
CsaV3_7G004120 Cucumis sativus L. HOM05D004263 ORTHO05D004931 4.6e-295 1018.1 986 52.5
C05p10740 Brassica napus HOM05D004263 ORTHO05D004931 5.9e-295 1017.7 982 52.2
BraA08t35204Z Brassica rapa HOM05D004263 ORTHO05D004931 5.9e-295 1017.7 990 52.1
ECA246G4434 Erigeron canadensis HOM05D004263 ORTHO05D004931 5.9e-295 1017.7 977 51.8
SalBow7G3995 Salvia bowleyana HOM05D004263 ORTHO05D004931 5.9e-295 1017.7 977 53.2
AL1G23830 Arabidopsis lyrata HOM05D004263 ORTHO05D004931 1.0e-294 1016.9 977 52.0
C08p15450 Brassica napus HOM05D004263 ORTHO05D004931 1.0e-294 1016.9 988 52.2
Ah.11g047230 Amaranthus hybridus HOM05D004263 ORTHO05D004931 1.7e-294 1016.1 987 52.8
Ca_01536_v3 Cicer arietinum L. HOM05D004263 ORTHO05D004931 1.7e-294 1016.1 986 51.6
Sed0028127 Sechium edule HOM05D004263 ORTHO05D004931 2.3e-294 1015.8 975 52.3
arahy.Tifrunner.gnm1.ann1.RA2UAB Arachis hypogaea HOM05D004263 ORTHO05D004931 5.0e-294 1014.6 1013 51.4
CSS0005038 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 5.0e-294 1014.6 986 51.8
CARHR012770 Cardamine hirsuta HOM05D004263 ORTHO05D004931 5.0e-294 1014.6 979 52.1
Cfa010655 Carpinus fangiana HOM05D004263 ORTHO05D004931 5.0e-294 1014.6 987 52.4
Eucgr.K00914 Eucalyptus grandis HOM05D004263 ORTHO05D004931 5.0e-294 1014.6 978 52.0
Phvul.005G107700 Phaseolus vulgaris HOM05D004263 ORTHO05D004931 6.6e-294 1014.2 988 51.6
HPP92_004167 Vanilla planifolia HOM05D004263 ORTHO05D004931 6.6e-294 1014.2 998 51.7
BraA06t24102Z Brassica rapa HOM05D004263 ORTHO05D004931 1.1e-293 1013.4 986 51.8
Potri.013G147600 Populus trichocarpa HOM05D004263 ORTHO05D004931 1.1e-293 1013.4 981 51.8
PSO339G5244 Papaver somniferum HOM05D004263 ORTHO05D004931 1.9e-293 1012.7 986 51.9
AT1G12470 Arabidopsis thaliana HOM05D004263 ORTHO05D004931 5.6e-293 1011.1 979 51.9
EL10As1g23122 Beta vulgaris HOM05D004263 ORTHO05D004931 9.5e-293 1010.4 987 53.0
CSS0035062 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 2.1e-292 1009.2 978 52.2
QL08p037295 Quercus lobata HOM05D004263 ORTHO05D004931 2.1e-292 1009.2 988 52.0
Glyma.12G201100 Glycine max HOM05D004263 ORTHO05D004931 8.0e-292 1007.3 987 51.6
Medtr8g063380 Medicago truncatula HOM05D004263 ORTHO05D004931 8.9e-291 1003.8 1001 50.8
Oeu001693.1 Olea europaea HOM05D004263 ORTHO05D004931 8.9e-291 1003.8 987 52.5
arahy.Tifrunner.gnm1.ann1.0PC56D Arachis hypogaea HOM05D004263 ORTHO05D004931 3.7e-289 998.4 1070 49.0
AUR62034472 Chenopodium quinoa HOM05D004263 ORTHO05D004931 3.5e-287 991.9 987 52.1
Lsat_1_v5_gn_3_39980 Lactuca sativa HOM05D004263 ORTHO05D004931 1.0e-286 990.3 972 51.1
Nn2g15850 Nelumbo nucifera HOM05D004263 ORTHO05D004931 2.5e-285 985.7 934 52.6
DCAR_009724 Daucus carota HOM05D004263 ORTHO05D004931 2.8e-284 982.2 990 51.2
BolC8t49173H Brassica oleracea HOM05D004263 ORTHO05D004931 3.6e-284 981.9 1023 49.7
Os08g0178100 Oryza sativa ssp. japonica HOM05D004263 ORTHO05D004931 4.0e-283 978.4 995 51.3
Lalb_Chr22g0356351 Lupinus albus HOM05D004263 ORTHO05D004931 2.6e-282 975.7 940 52.6
Sabra13G0119200 Salix brachista HOM05D004263 ORTHO05D004931 9.9e-282 973.8 980 50.5
Duzib248G0991 Durio zibethinus HOM05D004263 ORTHO05D004931 3.2e-280 968.8 978 50.5
Haze_13086 Corylus avellana HOM05D004263 ORTHO05D004931 4.1e-280 968.4 1082 47.7
Sc08g0004410 Simmondsia chinensis HOM05D004263 ORTHO05D004931 2.3e-278 962.6 897 54.8
Lj8C117G6 Lonicera japonica HOM05D004263 ORTHO05D004931 1.5e-277 959.9 978 50.2
ClCG02G001300 Citrullus lanatus HOM05D004263 ORTHO05D004931 2.8e-276 955.7 1014 50.0
AagrBONN_evm.TU.Sc2ySwM_228.3812 Anthoceros agrestis HOM05D004263 ORTHO05D004931 3.1e-275 952.2 798 58.9
BcaC05g25186 Brassica carinata HOM05D004263 ORTHO05D004931 3.8e-273 945.3 856 55.5
AUR62041769 Chenopodium quinoa HOM05D004263 ORTHO05D004931 1.1e-272 943.7 987 50.9
Haze_03591 Corylus avellana HOM05D004263 ORTHO05D004931 4.7e-268 928.3 1039 48.6
CDE05G0585 Ceratophyllum demersum HOM05D004263 ORTHO05D004931 5.2e-267 924.9 983 49.2
Atru.chr6.3077 Acer truncatum HOM05D004263 ORTHO05D004931 1.3e-262 910.2 918 51.1
unitig_0.g1433 Utricularia gibba HOM05D004263 ORTHO05D004931 1.9e-261 906.4 848 54.4
MELO3C018764.2 Cucumis melo HOM05D004263 ORTHO05D004931 7.4e-253 877.9 787 55.5
ATR0737G173 Amborella trichopoda HOM05D004263 ORTHO05D004931 9.6e-253 877.5 945 49.3
Cfa014543 Carpinus fangiana HOM05D004263 ORTHO05D004931 7.6e-250 867.8 787 54.8
Actinidia30490 Actinidia chinensis HOM05D004263 ORTHO05D004931 3.8e-241 839.0 803 53.7
Hma1.2p1_0565F.1_g179570 Hydrangea macrophylla HOM05D004263 ORTHO05D004931 6.5e-241 838.2 811 52.4
CSS0039065 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 4.8e-236 822.0 978 45.8
MBI02_g13236_MAGBIO Magnolia biondii HOM05D004263 ORTHO05D004931 1.6e-231 807.0 788 52.4
Rhsim04G0063000 Rhododendron simsii HOM05D004263 ORTHO05D004931 3.3e-229 799.3 750 53.7
MSTRG.11470 Avicennia marina HOM05D004263 ORTHO05D004931 2.6e-226 789.6 750 53.6
Cpa.g.sc34.88 Carica papaya HOM05D004263 ORTHO05D004931 1.5e-221 773.9 765 51.8
Medtr5g026090 Medicago truncatula HOM05D004263 ORTHO05D004931 9.4e-208 728.0 773 49.7
Lj1C736G5 Lonicera japonica HOM05D004263 ORTHO05D004931 2.6e-197 693.3 755 48.5
Zm00001eb412950 Zea mays HOM05D004263 ORTHO05D004931 1.3e-196 691.0 676 53.3
Nitab4.5_0001514g0010 Nicotiana tabacum HOM05D004263 ORTHO05D004931 9.2e-187 658.3 607 55.0
Dinv23716 Davidia involucrata HOM05D004263 ORTHO05D004931 1.5e-173 614.4 560 55.5
QL08p037237 Quercus lobata HOM05D004263 ORTHO05D004931 8.3e-172 608.6 644 50.0
SHI10474 Sapria himalayana HOM05D004263 ORTHO05D004931 1.9e-163 580.9 607 48.4
Nitab4.5_0000025g0490 Nicotiana tabacum HOM05D004263 ORTHO05D004931 6.2e-159 565.8 575 50.6
TPR.G26159 Trifolium pratense HOM05D004263 ORTHO05D004931 2.2e-156 557.4 517 52.2
Oeu001695.1 Olea europaea HOM05D004263 ORTHO05D004931 1.7e-145 521.2 515 53.8
VMungo1080G0385 Vigna mungo HOM05D004263 ORTHO05D004931 7.4e-120 436.0 417 50.4
PRCOL_00001544 Prasinoderma coloniale HOM05D004263 ORTHO05D004931 1.1e-112 412.1 1093 29.3
Cfa022578 Carpinus fangiana HOM05D004263 ORTHO05D004931 2.4e-102 377.9 1022 28.6
Dinv23715 Davidia involucrata HOM05D004263 ORTHO05D004931 6.5e-92 343.2 341 48.4
Nitab4.5_0000025g0510 Nicotiana tabacum HOM05D004263 ORTHO05D004931 1.5e-88 332.0 282 58.5
Nitab4.5_0001514g0020 Nicotiana tabacum HOM05D004263 ORTHO05D004931 2.6e-88 331.3 333 51.1
Cre07.g328550 Chlamydomonas reinhardtii HOM05D004263 ORTHO05D004931 2.0e-85 321.6 1282 26.7
CAN.G224.16 Capsicum annuum HOM05D004263 ORTHO05D004931 1.7e-84 318.5 240 65.4
MSTRG.11471 Avicennia marina HOM05D004263 ORTHO05D004931 1.2e-69 269.2 232 52.6
CBR_g40703 Chara braunii HOM05D004263 ORTHO05D004931 9.5e-67 259.6 469 35.4
CAN.G2148.2 Capsicum annuum HOM05D004263 ORTHO05D004931 2.8e-66 258.1 278 50.7
CBR_g50947 Chara braunii HOM05D004263 ORTHO05D004931 3.6e-66 257.7 271 51.3
CAN.G2148.1 Capsicum annuum HOM05D004263 ORTHO05D004931 1.2e-64 252.7 225 52.4
Lj1C736T2 Lonicera japonica HOM05D004263 ORTHO05D004931 1.3e-60 239.2 199 54.8
BcaC05g25136 Brassica carinata HOM05D004263 ORTHO05D004931 9.5e-59 233.0 202 53.0
CAN.G224.18 Capsicum annuum HOM05D004263 ORTHO05D004931 2.6e-56 224.9 225 50.2
PGSC0003DMG400025399 Solanum tuberosum HOM05D004263 ORTHO05D004931 2.3e-52 211.8 178 55.1
Cpa.g.sc34.89 Carica papaya HOM05D004263 ORTHO05D004931 3.1e-41 174.9 147 51.7
CBR_g40701 Chara braunii HOM05D004263 ORTHO05D004931 3.9e-36 157.9 167 53.9
Oeu001692.1 Olea europaea HOM05D004263 ORTHO05D004931 3.6e-34 151.4 147 45.6
Medtr8g471030 Medicago truncatula HOM05D004263 ORTHO05D004931 5.3e-33 147.5 122 51.6
TPR.G28496 Trifolium pratense HOM05D004086 ORTHO05D004641 9.3e-30 136.7 202 37.6
CSS0037177 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 9.0e-25 120.2 218 33.9
SEGI_40242 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 1.7e-23 115.9 96 64.6
SEGI_16142 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 6.4e-23 114.0 71 74.6
SEGI_10945 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 7.1e-22 110.5 81 61.7
SEGI_22414 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 2.3e-20 105.5 111 51.4
SEGI_06467 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 3.0e-20 105.1 94 57.4
CSS0002414 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 5.1e-20 104.4 174 37.9
BolC9t57681H Brassica oleracea HOM05D005294 ORTHO05D006720 2.8e-18 98.6 114 47.4
C09p48310 Brassica napus HOM05D005294 ORTHO05D006720 6.2e-18 97.4 114 46.5
SEGI_15765 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 2.4e-17 95.5 121 46.3
SEGI_30776 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 2.4e-17 95.5 121 46.3
CSS0009942 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 1.2e-16 93.2 80 63.8
CAN.G2148.3 Capsicum annuum HOM05D004263 ORTHO05D004931 3.8e-15 88.2 61 72.1
CAN.G224.17 Capsicum annuum HOM05D004263 ORTHO05D004931 1.6e-13 82.8 77 55.8
Atru.chr5.268 Acer truncatum HOM05D004263 ORTHO05D004931 4.6e-13 81.3 134 33.6
SEGI_32704 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 9.6e-11 73.6 47 63.8
MD02G1222100 Malus domestica HOM05D004263 ORTHO05D004931 3.7e-10 71.6 54 59.3
CAN.G224.15 Capsicum annuum HOM05D004263 ORTHO05D004931 3.4e-08 65.1 96 38.5
Nitab4.5_0000025g0500 Nicotiana tabacum HOM05D004263 ORTHO05D004931 4.5e-08 64.7 59 57.6
MCO10G067 Micromonas commoda HOM05D004263 ORTHO05D004931 1.7e-07 62.8 225 24.4
CAN.G666.1 Capsicum annuum HOM05D004263 ORTHO05D004931 5.0e-07 61.2 81 35.8


User provided reference genes

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