Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO236G0070 Selaginella moellendorffii HOM05D001728 ORTHO05D004321 2.6e-59 231.9 119 100.0
SMO347G0576 Selaginella moellendorffii HOM05D001728 ORTHO05D004321 2.6e-59 231.9 119 100.0
CARHR257870 Cardamine hirsuta HOM05D001728 ORTHO05D004321 6.7e-23 110.9 137 49.6
Pp3c22_19100 Physcomitrium patens HOM05D001728 ORTHO05D004321 8.7e-23 110.5 135 48.9
Eucgr.J02593 Eucalyptus grandis HOM05D001728 ORTHO05D004321 1.6e-21 106.3 136 48.5
Lj5A28G49 Lonicera japonica HOM05D001728 ORTHO05D004321 1.6e-21 106.3 137 47.4
Aa31LG7G2090 Aethionema arabicum HOM05D001728 ORTHO05D004321 2.8e-21 105.5 132 47.0
Sed0018882 Sechium edule HOM05D001728 ORTHO05D004321 3.7e-21 105.1 130 49.2
SEGI_06866 Sequoiadendron giganteum HOM05D001728 ORTHO05D004321 3.7e-21 105.1 131 48.9
THA.LOC104812276 Tarenaya hassleriana HOM05D001728 ORTHO05D004321 4.8e-21 104.8 134 47.8
Gohir.A06G142800 Gossypium hirsutum HOM05D001728 ORTHO05D004321 8.2e-21 104.0 131 48.1
Manes.04G151300 Manihot esculenta HOM05D001728 ORTHO05D004321 1.1e-20 103.6 129 48.1
SalBow6G2824 Salvia bowleyana HOM05D001728 ORTHO05D004321 1.8e-20 102.8 134 47.8
GSVIVG01016663001 Vitis vinifera HOM05D001728 ORTHO05D004321 1.8e-20 102.8 134 48.5
Actinidia31146 Actinidia chinensis HOM05D001728 ORTHO05D004321 3.1e-20 102.1 130 48.5
Psat4g164960 Pisum sativum HOM05D001728 ORTHO05D004321 3.1e-20 102.1 136 47.1
Sed0008897 Sechium edule HOM05D001728 ORTHO05D004321 3.1e-20 102.1 131 48.1
SGA_v2.0_scaffold122G33304 Striga asiatica HOM05D001728 ORTHO05D004321 3.1e-20 102.1 134 47.0
Gohir.D06G148500 Gossypium hirsutum HOM05D001728 ORTHO05D004321 4.1e-20 101.7 132 49.2
PGSC0003DMG401004867 Solanum tuberosum HOM05D001728 ORTHO05D004321 5.3e-20 101.3 128 48.4
AT5G50430 Arabidopsis thaliana HOM05D001728 ORTHO05D004321 6.9e-20 100.9 142 46.5
ECA232G0029 Erigeron canadensis HOM05D001728 ORTHO05D004321 6.9e-20 100.9 132 48.5
ATR0099G071 Amborella trichopoda HOM05D001728 ORTHO05D004321 9.0e-20 100.5 131 46.6
Manes.11G012300 Manihot esculenta HOM05D001728 ORTHO05D004321 9.0e-20 100.5 133 46.6
Rhsim08G0245100 Rhododendron simsii HOM05D001728 ORTHO05D004321 9.0e-20 100.5 135 47.4
arahy.Tifrunner.gnm1.ann1.158S68 Arachis hypogaea HOM05D001728 ORTHO05D004321 1.2e-19 100.1 137 46.7
Cc04_g00660 Coffea canephora HOM05D001728 ORTHO05D004321 1.2e-19 100.1 130 48.5
CsaV3_3G031050 Cucumis sativus L. HOM05D001728 ORTHO05D004321 1.2e-19 100.1 130 47.7
Lalb_Chr04g0253961 Lupinus albus HOM05D001728 ORTHO05D004321 1.2e-19 100.1 134 45.5
Thecc.06G130700 Theobroma cacao HOM05D001728 ORTHO05D004321 1.2e-19 100.1 140 45.7
Ca_23449_v3 Cicer arietinum L. HOM05D001728 ORTHO05D004321 1.5e-19 99.8 133 47.4
Ciclev10026383m.g Citrus clementina HOM05D001728 ORTHO05D004321 1.5e-19 99.8 132 47.0
Hma1.2p1_0090F.1_g045760 Hydrangea macrophylla HOM05D001728 ORTHO05D004321 1.5e-19 99.8 135 45.2
Hma1.2p1_2628F.1_g325685 Hydrangea macrophylla HOM05D001728 ORTHO05D004321 1.5e-19 99.8 135 45.2
Lalb_Chr04g0261251 Lupinus albus HOM05D001728 ORTHO05D004321 1.5e-19 99.8 129 47.3
Lalb_Chr17g0343191 Lupinus albus HOM05D001728 ORTHO05D004321 1.5e-19 99.8 134 46.3
Solyc06g063100.3 Solanum lycopersicum HOM05D001728 ORTHO05D004321 1.5e-19 99.8 126 46.8
VMungo0331G1763 Vigna mungo HOM05D001728 ORTHO05D004321 1.5e-19 99.8 134 47.0
Duzib235G0145 Durio zibethinus HOM05D001728 ORTHO05D004321 2.0e-19 99.4 130 47.7
Gorai.010G173000 Gossypium raimondii HOM05D001728 ORTHO05D004321 2.0e-19 99.4 131 47.3
Cpa.g.sc25.198 Carica papaya HOM05D001728 ORTHO05D004321 2.6e-19 99.0 139 43.9
RcHm_v2.0_Chr2g0148081 Rosa chinensis HOM05D001728 ORTHO05D004321 2.6e-19 99.0 139 43.9
MELO3C022707.2 Cucumis melo HOM05D001728 ORTHO05D004321 3.4e-19 98.6 130 48.5
vmacro18718 Vaccinium macrocarpon HOM05D001728 ORTHO05D004321 3.4e-19 98.6 131 48.1
vmacro18772 Vaccinium macrocarpon HOM05D001728 ORTHO05D004321 3.4e-19 98.6 131 48.1
Sp1g15410 Schrenkiella parvula HOM05D001728 ORTHO05D004321 4.5e-19 98.2 133 45.9
Sopen06g022550 Solanum pennellii HOM05D001728 ORTHO05D004321 4.5e-19 98.2 126 46.0
ClCG07G014270 Citrullus lanatus HOM05D001728 ORTHO05D004321 5.9e-19 97.8 130 46.9
Migut.I01136 Erythranthe guttata HOM05D001728 ORTHO05D004321 5.9e-19 97.8 134 45.5
Medtr8g023380 Medicago truncatula HOM05D001728 ORTHO05D004321 5.9e-19 97.8 140 45.0
FvH4_6g35920 Fragaria vesca HOM05D001728 ORTHO05D004321 1.0e-18 97.1 139 43.9
FAN05G3900 Fragaria x ananassa HOM05D001728 ORTHO05D004321 1.0e-18 97.1 139 43.9
FAN09G1109 Fragaria x ananassa HOM05D001728 ORTHO05D004321 1.0e-18 97.1 139 43.9
FAN14G1964 Fragaria x ananassa HOM05D001728 ORTHO05D004321 1.0e-18 97.1 139 43.9
FAN14G5216 Fragaria x ananassa HOM05D001728 ORTHO05D004321 1.0e-18 97.1 139 43.9
CAN.G1682.23 Capsicum annuum HOM05D001728 ORTHO05D004321 1.3e-18 96.7 126 47.6
CiPaw.01G211100 Carya illinoinensis HOM05D001728 ORTHO05D004321 1.3e-18 96.7 131 48.1
Thhalv10014520m.g Eutrema salsugineum HOM05D001728 ORTHO05D004321 1.3e-18 96.7 140 42.9
TPR.G29473 Trifolium pratense HOM05D001728 ORTHO05D004321 1.3e-18 96.7 133 46.6
C05p15670 Brassica napus HOM05D001728 ORTHO05D004321 1.7e-18 96.3 131 46.6
Peaxi162Scf00038g02337 Petunia axillaris HOM05D001728 ORTHO05D004321 1.7e-18 96.3 135 48.1
THA.LOC104813967 Tarenaya hassleriana HOM05D001728 ORTHO05D004321 1.7e-18 96.3 129 47.3
BcaB03g13008 Brassica carinata HOM05D001728 ORTHO05D004321 2.2e-18 95.9 132 43.9
Phvul.010G122800 Phaseolus vulgaris HOM05D001728 ORTHO05D004321 2.2e-18 95.9 134 46.3
Sabra01G0130400 Salix brachista HOM05D001728 ORTHO05D004321 2.2e-18 95.9 130 45.4
TAR626G1627 Trochodendron aralioides HOM05D001728 ORTHO05D004321 2.2e-18 95.9 135 43.7
BcaC07g41410 Brassica carinata HOM05D001728 ORTHO05D004321 2.9e-18 95.5 131 45.0
Cfa003458 Carpinus fangiana HOM05D001728 ORTHO05D004321 2.9e-18 95.5 135 45.9
Thhalv10009625m.g Eutrema salsugineum HOM05D001728 ORTHO05D004321 2.9e-18 95.5 131 45.8
Glyma.07G046200 Glycine max HOM05D001728 ORTHO05D004321 2.9e-18 95.5 133 46.6
Hma1.2p1_1999F.1_g310540 Hydrangea macrophylla HOM05D001728 ORTHO05D004321 2.9e-18 95.5 131 45.8
Oeu006754.1 Olea europaea HOM05D001728 ORTHO05D004321 2.9e-18 95.5 132 47.0
HanXRQChr09g0277281 Helianthus annuus HOM05D001728 ORTHO05D004321 3.8e-18 95.1 131 47.3
Lj9A539T85 Lonicera japonica HOM05D001728 ORTHO05D004321 3.8e-18 95.1 137 47.4
TWI14G1006 Tripterygium wilfordii HOM05D001728 ORTHO05D004321 3.8e-18 95.1 130 45.4
CARHR017870 Cardamine hirsuta HOM05D001728 ORTHO05D004321 5.0e-18 94.7 130 46.2
FAN02G4585 Fragaria x ananassa HOM05D001728 ORTHO05D004321 5.0e-18 94.7 139 43.2
QL05p000874 Quercus lobata HOM05D001728 ORTHO05D004321 5.0e-18 94.7 135 45.9
QL05p001120 Quercus lobata HOM05D001728 ORTHO05D004321 5.0e-18 94.7 135 45.9
AL8G24660 Arabidopsis lyrata HOM05D001728 ORTHO05D004321 6.5e-18 94.4 139 43.9
BolC8t51946H Brassica oleracea HOM05D001728 ORTHO05D004321 6.5e-18 94.4 133 42.9
Mapoly0008s0153 Marchantia polymorpha HOM05D001728 ORTHO05D004321 6.5e-18 94.4 95 52.6
Solyc03g123660.3 Solanum lycopersicum HOM05D001728 ORTHO05D004321 6.5e-18 94.4 135 45.2
Sopen03g041430 Solanum pennellii HOM05D001728 ORTHO05D004321 6.5e-18 94.4 135 45.2
BcaC05g25652 Brassica carinata HOM05D001728 ORTHO05D004321 8.5e-18 94.0 131 45.8
BcaC07g41430 Brassica carinata HOM05D001728 ORTHO05D004321 8.5e-18 94.0 137 42.3
A06p13230 Brassica napus HOM05D001728 ORTHO05D004321 8.5e-18 94.0 131 45.8
BolC5t30274H Brassica oleracea HOM05D001728 ORTHO05D004321 8.5e-18 94.0 131 45.8
BraA06t24476Z Brassica rapa HOM05D001728 ORTHO05D004321 8.5e-18 94.0 131 45.8
PGR102G2367 Punica granatum HOM05D001728 ORTHO05D004321 8.5e-18 94.0 139 44.6
MSTRG.10907 Avicennia marina HOM05D001728 ORTHO05D004321 1.1e-17 93.6 132 43.9
C08p43970 Brassica napus HOM05D001728 ORTHO05D004321 1.1e-17 93.6 133 42.1
COL.COLO4_30874 Corchorus olitorius HOM05D001728 ORTHO05D004321 1.1e-17 93.6 131 45.0
Potri.001G162200 Populus trichocarpa HOM05D001728 ORTHO05D004321 1.1e-17 93.6 130 44.6
AL1G29530 Arabidopsis lyrata HOM05D001728 ORTHO05D004321 1.4e-17 93.2 133 43.6
A09p60490 Brassica napus HOM05D001728 ORTHO05D004321 1.4e-17 93.2 133 45.1
BraA09t41420Z Brassica rapa HOM05D001728 ORTHO05D004321 1.4e-17 93.2 133 45.1
Glyma.16G014400 Glycine max HOM05D001728 ORTHO05D004321 1.4e-17 93.2 134 44.0
Carub.0001s1704 Capsella rubella HOM05D001728 ORTHO05D004321 1.9e-17 92.8 133 43.6
DCAR_007661 Daucus carota HOM05D001728 ORTHO05D004321 1.9e-17 92.8 141 44.0
Dinv20378 Davidia involucrata HOM05D001728 ORTHO05D004321 1.9e-17 92.8 118 45.8
Lj3g0026896 Lotus japonicus HOM05D001728 ORTHO05D004321 1.9e-17 92.8 136 46.3
arahy.Tifrunner.gnm1.ann1.FK8434 Arachis hypogaea HOM05D001728 ORTHO05D004321 2.5e-17 92.4 141 43.3
A08p30990 Brassica napus HOM05D001728 ORTHO05D004321 3.2e-17 92.0 130 45.4
C08p17810 Brassica napus HOM05D001728 ORTHO05D004321 3.2e-17 92.0 132 44.7
BolC8t49407H Brassica oleracea HOM05D001728 ORTHO05D004321 3.2e-17 92.0 132 44.7
BraA08t35028Z Brassica rapa HOM05D001728 ORTHO05D004321 3.2e-17 92.0 130 45.4
Rhsim12G0213200 Rhododendron simsii HOM05D000276 ORTHO05D003951 3.2e-17 92.0 122 47.5
CAN.G790.54 Capsicum annuum HOM05D001728 ORTHO05D004321 4.2e-17 91.7 135 46.7
PSO724G0814 Papaver somniferum HOM05D001728 ORTHO05D004321 4.2e-17 91.7 143 44.1
TWI23G0186 Tripterygium wilfordii HOM05D001728 ORTHO05D004321 5.5e-17 91.3 128 45.3
Actinidia24421 Actinidia chinensis HOM05D001728 ORTHO05D004321 9.4e-17 90.5 81 63.0
AT1G17280 Arabidopsis thaliana HOM05D001728 ORTHO05D004321 9.4e-17 90.5 133 43.6
CiPaw.02G130700 Carya illinoinensis HOM05D001728 ORTHO05D004321 9.4e-17 90.5 129 45.7
CANSAT56G0906 Cannabis sativa HOM05D001728 ORTHO05D004321 1.2e-16 90.1 130 43.1
Gohir.A10G048037 Gossypium hirsutum HOM05D001728 ORTHO05D004321 1.2e-16 90.1 113 45.1
Gohir.D10G051032 Gossypium hirsutum HOM05D001728 ORTHO05D004321 1.2e-16 90.1 113 44.2
Gorai.011G054900 Gossypium raimondii HOM05D001728 ORTHO05D004321 1.2e-16 90.1 113 44.2
PSO135G0334 Papaver somniferum HOM05D001728 ORTHO05D004321 1.2e-16 90.1 141 44.7
Prupe.3G030700 Prunus persica HOM05D001728 ORTHO05D004321 1.2e-16 90.1 136 44.9
Hund05701 Selenicereus undatus HOM05D001728 ORTHO05D004321 1.2e-16 90.1 134 44.8
AagrBONN_evm.TU.Sc2ySwM_228.340 Anthoceros agrestis HOM05D001728 ORTHO05D004321 1.6e-16 89.7 117 45.3
Peaxi162Scf00207g01547 Petunia axillaris HOM05D001728 ORTHO05D004321 1.6e-16 89.7 107 49.5
CSS0025062 Camellia sinensis var. sinensis HOM05D001728 ORTHO05D004321 2.1e-16 89.4 131 45.8
Duzib160G0016 Durio zibethinus HOM05D001728 ORTHO05D004321 2.1e-16 89.4 140 42.1
Lsat_1_v5_gn_4_90580 Lactuca sativa HOM05D001728 ORTHO05D004321 2.1e-16 89.4 139 43.2
Sc15g0004040 Simmondsia chinensis HOM05D001728 ORTHO05D004321 2.1e-16 89.4 87 55.2
AUR62025612 Chenopodium quinoa HOM05D001728 ORTHO05D004321 2.7e-16 89.0 129 44.2
AUR62043500 Chenopodium quinoa HOM05D001728 ORTHO05D004321 2.7e-16 89.0 129 44.2
MD17G1154600 Malus domestica HOM05D001728 ORTHO05D004321 2.7e-16 89.0 129 44.2
Oeu015470.1 Olea europaea HOM05D001728 ORTHO05D004321 2.7e-16 89.0 133 42.9
Carub.0008s1054 Capsella rubella HOM05D001728 ORTHO05D004321 3.6e-16 88.6 139 41.0
CDE07G0536 Ceratophyllum demersum HOM05D001728 ORTHO05D004321 4.6e-16 88.2 129 41.9
vmacro22013 Vaccinium macrocarpon HOM05D001728 ORTHO05D004321 6.1e-16 87.8 132 47.0
Zm00001eb374150 Zea mays HOM05D001728 ORTHO05D004321 6.1e-16 87.8 134 41.8
BcaB07g34036 Brassica carinata HOM05D001728 ORTHO05D004321 1.0e-15 87.0 131 45.0
MD09G1172300 Malus domestica HOM05D001728 ORTHO05D004321 1.4e-15 86.7 132 43.2
TAR624G0656 Trochodendron aralioides HOM05D001728 ORTHO05D004321 2.3e-15 85.9 136 41.9
Nitab4.5_0006966g0050 Nicotiana tabacum HOM05D001728 ORTHO05D004321 3.9e-15 85.1 132 41.7
Oeu053418.1 Olea europaea HOM05D001728 ORTHO05D004321 3.9e-15 85.1 113 46.9
unitig_26.g8911 Utricularia gibba HOM05D001728 ORTHO05D004321 8.8e-15 84.0 70 62.9
Zm00001eb278450 Zea mays HOM05D001728 ORTHO05D004321 8.8e-15 84.0 134 40.3
Potri.003G073100 Populus trichocarpa HOM05D001728 ORTHO05D004321 2.5e-14 82.4 74 59.5
Nitab4.5_0006338g0070 Nicotiana tabacum HOM05D001728 ORTHO05D004321 3.3e-14 82.0 132 40.9
EL10Ac7g16497 Beta vulgaris HOM05D001728 ORTHO05D004321 5.7e-14 81.3 145 39.3
AUR62043999 Chenopodium quinoa HOM05D001728 ORTHO05D004321 9.7e-14 80.5 67 65.7
Aqoxy7G00928 Aquilegia oxysepala HOM05D001728 ORTHO05D004321 1.7e-13 79.7 143 39.9
AUR62001400 Chenopodium quinoa HOM05D001728 ORTHO05D004321 1.7e-13 79.7 129 41.1
BcaC07g38844 Brassica carinata HOM05D001728 ORTHO05D004321 2.2e-13 79.3 129 38.8
Os06g0193000 Oryza sativa ssp. japonica HOM05D001728 ORTHO05D004321 2.8e-13 79.0 135 39.3
HPP92_009327 Vanilla planifolia HOM05D001728 ORTHO05D004321 3.7e-13 78.6 141 41.1
Ah.15g094900 Amaranthus hybridus HOM05D001728 ORTHO05D004321 4.8e-13 78.2 128 37.5
Atru.chr1.4160 Acer truncatum HOM05D001728 ORTHO05D004321 6.3e-13 77.8 49 77.6
MBI19_g32874_MAGBIO Magnolia biondii HOM05D001728 ORTHO05D004321 1.1e-12 77.0 125 42.4
Actinidia21840 Actinidia chinensis HOM05D005942 ORTHO05D007209 1.8e-12 76.3 114 41.2
Hund18634 Selenicereus undatus HOM05D001728 ORTHO05D004321 2.4e-12 75.9 174 33.9
Nitab4.5_0006190g0040 Nicotiana tabacum HOM05D001728 ORTHO05D004321 3.1e-12 75.5 105 41.9
Zm00001eb367340 Zea mays HOM05D001728 ORTHO05D004321 4.1e-12 75.1 84 50.0
PGSC0003DMG400009150 Solanum tuberosum HOM05D001728 ORTHO05D004321 5.3e-12 74.7 126 40.5
Nitab4.5_0009717g0020 Nicotiana tabacum HOM05D001728 ORTHO05D004321 3.4e-11 72.0 105 39.0
Haze_16140 Corylus avellana HOM05D001728 ORTHO05D004321 1.0e-10 70.5 70 54.3
Zm00001eb028890 Zea mays HOM05D001728 ORTHO05D004321 1.0e-10 70.5 125 35.2
Zm00001eb210040 Zea mays HOM05D001728 ORTHO05D004321 1.0e-10 70.5 125 35.2
Zm00001eb399730 Zea mays HOM05D001728 ORTHO05D004321 1.0e-10 70.5 125 35.2
Cre08.g372400 Chlamydomonas reinhardtii HOM05D001728 ORTHO05D004321 1.7e-10 69.7 69 55.1
TPR.G11433 Trifolium pratense HOM05D001728 ORTHO05D004321 3.8e-10 68.6 52 67.3
Zm00001eb329650 Zea mays HOM05D001728 ORTHO05D004321 1.4e-09 66.6 121 33.9
Zm00001eb315560 Zea mays HOM05D001728 ORTHO05D004321 5.5e-09 64.7 119 33.6
Ah.08g217390 Amaranthus hybridus HOM05D001728 ORTHO05D004321 9.4e-09 63.9 40 77.5
Aqoxy549s001 Aquilegia oxysepala HOM05D001728 ORTHO05D004321 1.2e-08 63.5 137 35.0
Zm00001eb171360 Zea mays HOM05D001728 ORTHO05D004321 1.6e-08 63.2 118 33.1
Zm00001eb241260 Zea mays HOM05D001728 ORTHO05D004321 1.6e-08 63.2 118 33.1
Nn6g35743 Nelumbo nucifera HOM05D001728 ORTHO05D004321 1.4e-07 60.1 38 78.9
TAR627G0048 Trochodendron aralioides HOM05D001728 ORTHO05D004321 1.8e-07 59.7 40 72.5
CDE06G1983 Ceratophyllum demersum HOM05D001728 ORTHO05D004321 2.3e-07 59.3 39 71.8
CBR_g29935 Chara braunii HOM05D001728 ORTHO05D004321 5.1e-07 58.2 58 48.3
PRCOL_00004928 Prasinoderma coloniale HOM05D001728 ORTHO05D004321 2.0e-06 56.2 56 48.2


User provided reference genes

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