Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO236G0041 Selaginella moellendorffii HOM05D005338 ORTHO05D006550 8.1e-88 327.0 162 100.0
SMO236G0045 Selaginella moellendorffii HOM05D005338 ORTHO05D006550 5.1e-74 281.2 156 91.0
Mapoly0023s0045 Marchantia polymorpha HOM05D005338 ORTHO05D006550 7.7e-46 187.6 162 56.2
Nn8g40744 Nelumbo nucifera HOM05D005338 ORTHO05D006550 7.7e-46 187.6 162 58.6
PSO017G6030 Papaver somniferum HOM05D005338 ORTHO05D006550 3.8e-45 185.3 162 57.4
Oeu012884.1 Olea europaea HOM05D005338 ORTHO05D006550 6.5e-45 184.5 162 56.8
Pp3c14_750 Physcomitrium patens HOM05D005338 ORTHO05D006550 8.5e-45 184.1 166 54.2
Cfa018461 Carpinus fangiana HOM05D005338 ORTHO05D006550 1.4e-44 183.3 162 58.0
AT2G22370 Arabidopsis thaliana HOM05D005338 ORTHO05D006550 1.9e-44 183.0 162 54.3
CiPaw.15G069200 Carya illinoinensis HOM05D005338 ORTHO05D006550 1.9e-44 183.0 162 56.8
MBI01_g22964_MAGBIO Magnolia biondii HOM05D005338 ORTHO05D006550 1.9e-44 183.0 162 56.2
Duzib147G0908 Durio zibethinus HOM05D005338 ORTHO05D006550 2.5e-44 182.6 162 56.2
Glyma.09G054300 Glycine max HOM05D005338 ORTHO05D006550 2.5e-44 182.6 162 56.8
SalBow1G1006 Salvia bowleyana HOM05D000168 ORTHO05D006550 3.2e-44 182.2 162 56.8
Actinidia15288 Actinidia chinensis HOM05D005338 ORTHO05D006550 4.2e-44 181.8 162 56.8
EL10Ac3g06218 Beta vulgaris HOM05D005338 ORTHO05D006550 5.5e-44 181.4 162 54.9
THA.LOC104824882 Tarenaya hassleriana HOM05D005338 ORTHO05D006550 5.5e-44 181.4 162 54.3
Cfa002226 Carpinus fangiana HOM05D005338 ORTHO05D006550 7.2e-44 181.0 162 56.8
Glyma.15G160500 Glycine max HOM05D005338 ORTHO05D006550 7.2e-44 181.0 162 56.8
PSO170G4003 Papaver somniferum HOM05D005338 ORTHO05D006550 7.2e-44 181.0 162 56.8
Hund12454 Selenicereus undatus HOM05D005338 ORTHO05D006550 7.2e-44 181.0 162 55.6
TWI74G1059 Tripterygium wilfordii HOM05D005338 ORTHO05D006550 7.2e-44 181.0 162 54.9
Ca_02026_v3 Cicer arietinum L. HOM05D005338 ORTHO05D006550 9.4e-44 180.6 162 56.8
ClCG08G015430 Citrullus lanatus HOM05D005338 ORTHO05D006550 1.2e-43 180.3 162 58.0
CsaV3_2G028360 Cucumis sativus L. HOM05D005338 ORTHO05D006550 1.2e-43 180.3 162 58.0
Migut.H00565 Erythranthe guttata HOM05D005338 ORTHO05D006550 1.2e-43 180.3 162 54.3
vmacro21598 Vaccinium macrocarpon HOM05D005338 ORTHO05D006550 1.2e-43 180.3 162 55.6
Cc07_g04760 Coffea canephora HOM05D005338 ORTHO05D006550 1.6e-43 179.9 162 55.6
Thhalv10000318m.g Eutrema salsugineum HOM05D005338 ORTHO05D006550 1.6e-43 179.9 162 53.7
Os02g0193900 Oryza sativa ssp. japonica HOM05D005338 ORTHO05D006550 1.6e-43 179.9 162 54.3
QL02p007082 Quercus lobata HOM05D005338 ORTHO05D006550 1.6e-43 179.9 162 56.8
Thecc.01G098200 Theobroma cacao HOM05D005338 ORTHO05D006550 1.6e-43 179.9 162 56.2
unitig_744.g23988 Utricularia gibba HOM05D005338 ORTHO05D006550 1.6e-43 179.9 162 54.9
CARHR113580 Cardamine hirsuta HOM05D005338 ORTHO05D006550 2.1e-43 179.5 162 53.1
Nitab4.5_0000154g0040 Nicotiana tabacum HOM05D005338 ORTHO05D006550 2.1e-43 179.5 162 53.7
MSTRG.2958 Avicennia marina HOM05D005338 ORTHO05D006550 2.7e-43 179.1 162 55.6
Lj4g0021487 Lotus japonicus HOM05D005338 ORTHO05D006550 2.7e-43 179.1 162 55.6
Nitab4.5_0003384g0030 Nicotiana tabacum HOM05D005338 ORTHO05D006550 2.7e-43 179.1 162 53.7
SGA_v2.0_scaffold4G02341 Striga asiatica HOM05D005338 ORTHO05D006550 2.7e-43 179.1 162 55.6
A04p16850 Brassica napus HOM05D005338 ORTHO05D006550 3.6e-43 178.7 163 54.0
BraA04t17318Z Brassica rapa HOM05D005338 ORTHO05D006550 3.6e-43 178.7 163 54.0
Gohir.D11G220100 Gossypium hirsutum HOM05D005338 ORTHO05D006550 3.6e-43 178.7 162 55.6
BcaC02g08711 Brassica carinata HOM05D005338 ORTHO05D006550 4.6e-43 178.3 163 54.0
C04p51430 Brassica napus HOM05D005338 ORTHO05D006550 4.6e-43 178.3 163 54.0
BolC4t26735H Brassica oleracea HOM05D005338 ORTHO05D006550 4.6e-43 178.3 163 54.0
Eucgr.F01508 Eucalyptus grandis HOM05D005338 ORTHO05D006550 4.6e-43 178.3 156 55.8
Prupe.1G518900 Prunus persica HOM05D005338 ORTHO05D006550 4.6e-43 178.3 162 55.6
BcaC02g08666 Brassica carinata HOM05D005338 ORTHO05D006550 6.1e-43 177.9 163 54.0
Gohir.A02G128500 Gossypium hirsutum HOM05D005338 ORTHO05D006550 6.1e-43 177.9 162 54.9
Gorai.003G040400 Gossypium raimondii HOM05D005338 ORTHO05D006550 6.1e-43 177.9 162 54.9
Prupe.1G517500 Prunus persica HOM05D005338 ORTHO05D006550 6.1e-43 177.9 162 56.2
Aqoxy6G01960 Aquilegia oxysepala HOM05D005338 ORTHO05D006550 7.9e-43 177.6 162 53.1
CSS0015965 Camellia sinensis var. sinensis HOM05D005338 ORTHO05D006550 7.9e-43 177.6 162 53.7
Sp4g01410 Schrenkiella parvula HOM05D005338 ORTHO05D006550 7.9e-43 177.6 161 53.4
Gorai.007G236400 Gossypium raimondii HOM05D005338 ORTHO05D006550 1.0e-42 177.2 162 55.6
Hma1.2p1_0471F.1_g159310 Hydrangea macrophylla HOM05D005338 ORTHO05D006550 1.0e-42 177.2 162 54.9
Solyc06g008010.3 Solanum lycopersicum HOM05D005338 ORTHO05D006550 1.0e-42 177.2 162 53.1
PGSC0003DMG400014704 Solanum tuberosum HOM05D005338 ORTHO05D006550 1.0e-42 177.2 162 53.1
AL4G11870 Arabidopsis lyrata HOM05D005338 ORTHO05D006550 1.4e-42 176.8 162 52.5
Phvul.009G240644 Phaseolus vulgaris HOM05D005338 ORTHO05D006550 1.4e-42 176.8 162 54.9
Ciclev10026443m.g Citrus clementina HOM05D005338 ORTHO05D006550 1.8e-42 176.4 162 55.6
Gohir.D03G039200 Gossypium hirsutum HOM05D005338 ORTHO05D006550 1.8e-42 176.4 162 54.3
Sed0010775 Sechium edule HOM05D005338 ORTHO05D006550 1.8e-42 176.4 162 56.8
VMungo1309G1758 Vigna mungo HOM05D005338 ORTHO05D006550 1.8e-42 176.4 162 55.6
GSVIVG01009622001 Vitis vinifera HOM05D005338 ORTHO05D006550 1.8e-42 176.4 162 54.9
Glyma.18G135700 Glycine max HOM05D005338 ORTHO05D006550 2.3e-42 176.0 162 56.2
Sopen06g002850 Solanum pennellii HOM05D005338 ORTHO05D006550 2.3e-42 176.0 162 52.5
Zm00001eb236490 Zea mays HOM05D005338 ORTHO05D006550 2.3e-42 176.0 162 53.7
Cpa.g.sc337.5 Carica papaya HOM05D005338 ORTHO05D006550 3.0e-42 175.6 162 54.3
CANSAT56G3114 Cannabis sativa HOM05D005338 ORTHO05D006550 3.9e-42 175.3 162 54.9
VMungo1215G3044 Vigna mungo HOM05D005338 ORTHO05D006550 3.9e-42 175.3 162 54.3
CDE07G0352 Ceratophyllum demersum HOM05D005338 ORTHO05D006550 5.1e-42 174.9 162 56.8
Gohir.A11G203500 Gossypium hirsutum HOM05D005338 ORTHO05D006550 6.7e-42 174.5 162 54.3
ATR0767G114 Amborella trichopoda HOM05D005338 ORTHO05D006550 8.8e-42 174.1 162 55.6
Carub.0004s0155 Capsella rubella HOM05D005338 ORTHO05D006550 8.8e-42 174.1 162 51.9
arahy.Tifrunner.gnm1.ann1.82M2ZV Arachis hypogaea HOM05D005338 ORTHO05D006550 1.1e-41 173.7 162 54.9
arahy.Tifrunner.gnm1.ann1.F09FAE Arachis hypogaea HOM05D005338 ORTHO05D006550 1.1e-41 173.7 162 54.9
arahy.Tifrunner.gnm1.ann1.N4382H Arachis hypogaea HOM05D005338 ORTHO05D006550 1.1e-41 173.7 162 54.9
arahy.Tifrunner.gnm1.ann1.VZ94AI Arachis hypogaea HOM05D005338 ORTHO05D006550 1.1e-41 173.7 162 54.9
Lalb_Chr15g0083931 Lupinus albus HOM05D005338 ORTHO05D006550 1.1e-41 173.7 162 54.3
MD15G1369800 Malus domestica HOM05D005338 ORTHO05D006550 1.1e-41 173.7 165 54.5
Haze_25403 Corylus avellana HOM05D005338 ORTHO05D006550 1.5e-41 173.3 196 48.5
Lj4A782T79 Lonicera japonica HOM05D005338 ORTHO05D006550 1.5e-41 173.3 163 56.4
ECA247G2066 Erigeron canadensis HOM05D005338 ORTHO05D006550 2.0e-41 172.9 164 53.7
Peaxi162Scf00479g00910 Petunia axillaris HOM05D005338 ORTHO05D006550 2.0e-41 172.9 162 52.5
RcHm_v2.0_Chr5g0038311 Rosa chinensis HOM05D005338 ORTHO05D006550 2.0e-41 172.9 162 53.1
Aqoxy1G02678 Aquilegia oxysepala HOM05D005338 ORTHO05D006550 3.3e-41 172.2 162 52.5
FAN13G0739 Fragaria x ananassa HOM05D005338 ORTHO05D006550 5.7e-41 171.4 162 52.5
FvH4_5g37300 Fragaria vesca HOM05D005338 ORTHO05D006550 7.4e-41 171.0 162 52.5
FAN18G4080 Fragaria x ananassa HOM05D005338 ORTHO05D006550 7.4e-41 171.0 162 52.5
HPP92_021909 Vanilla planifolia HOM05D005338 ORTHO05D006550 7.4e-41 171.0 162 50.0
COL.COLO4_27273 Corchorus olitorius HOM05D005338 ORTHO05D006550 9.7e-41 170.6 162 53.7
Medtr2g438770 Medicago truncatula HOM05D005338 ORTHO05D006550 1.3e-40 170.2 162 52.5
FAN08G1597 Fragaria x ananassa HOM05D005338 ORTHO05D006550 2.2e-40 169.5 162 51.9
CAN.G162.113 Capsicum annuum HOM05D005338 ORTHO05D006550 2.8e-40 169.1 162 50.6
Rhsim06G0038600 Rhododendron simsii HOM05D005338 ORTHO05D006550 2.8e-40 169.1 176 52.3
Sabra07G0078500 Salix brachista HOM05D005338 ORTHO05D006550 2.8e-40 169.1 162 53.7
FAN04G2403 Fragaria x ananassa HOM05D005338 ORTHO05D006550 3.7e-40 168.7 162 51.9
Medtr5g044730 Medicago truncatula HOM05D005338 ORTHO05D006550 3.7e-40 168.7 162 51.9
TPR.G29215 Trifolium pratense HOM05D005338 ORTHO05D006550 3.7e-40 168.7 162 51.9
DCAR_003287 Daucus carota HOM05D005338 ORTHO05D006550 6.3e-40 167.9 162 51.9
HanXRQChr04g0104391 Helianthus annuus HOM05D005338 ORTHO05D006550 6.3e-40 167.9 165 52.1
Manes.13G095300 Manihot esculenta HOM05D005338 ORTHO05D006550 1.1e-39 167.2 164 54.3
Lsat_1_v5_gn_1_19481 Lactuca sativa HOM05D005338 ORTHO05D006550 1.4e-39 166.8 162 53.1
PGR083G0298 Punica granatum HOM05D005338 ORTHO05D006550 1.4e-39 166.8 156 52.6
Psat1g148520 Pisum sativum HOM05D005338 ORTHO05D006550 1.8e-39 166.4 168 51.8
CANSAT25G1955 Cannabis sativa HOM05D005338 ORTHO05D006550 3.1e-39 165.6 162 52.5
Sopen03g010490 Solanum pennellii HOM05D005338 ORTHO05D006550 3.1e-39 165.6 162 50.0
Sopen03g021660 Solanum pennellii HOM05D005338 ORTHO05D006550 5.3e-39 164.9 162 50.0
Potri.007G095300 Populus trichocarpa HOM05D005338 ORTHO05D006550 2.6e-38 162.5 162 52.5
Sopen03g021630 Solanum pennellii HOM05D005338 ORTHO05D006550 3.4e-38 162.2 162 49.4
MELO3C010912.2 Cucumis melo HOM05D005338 ORTHO05D006550 1.3e-37 160.2 137 59.1
CAN.G176.23 Capsicum annuum HOM05D005338 ORTHO05D006550 3.8e-37 158.7 156 50.6
AUR62040070 Chenopodium quinoa HOM05D005338 ORTHO05D006550 1.1e-36 157.1 137 55.5
SHI19279 Sapria himalayana HOM05D005338 ORTHO05D006550 5.5e-36 154.8 156 53.8
Aa31LG7G14440 Aethionema arabicum HOM05D005338 ORTHO05D006550 1.2e-35 153.7 221 39.8
AagrBONN_evm.TU.Sc2ySwM_362.1720 Anthoceros agrestis HOM05D005338 ORTHO05D006550 1.1e-33 147.1 150 47.3
Dinv36026 Davidia involucrata HOM05D005338 ORTHO05D006550 1.4e-31 140.2 162 47.5
SalBow1G1231 Salvia bowleyana HOM05D005338 ORTHO05D006550 1.8e-31 139.8 117 59.8
RcHm_v2.0_Chr7g0238911 Rosa chinensis HOM05D005338 ORTHO05D006550 2.4e-31 139.4 131 52.7
RcHm_v2.0_Chr5g0034471 Rosa chinensis HOM05D005338 ORTHO05D006550 3.5e-30 135.6 120 55.0
Sopen00g003620 Solanum pennellii HOM05D005338 ORTHO05D006550 1.5e-28 130.2 122 52.5
TAR628G0003 Trochodendron aralioides HOM05D005338 ORTHO05D006550 6.1e-27 124.8 109 56.9
Sc15g0006680 Simmondsia chinensis HOM05D005338 ORTHO05D006550 2.3e-26 122.9 109 55.0
RcHm_v2.0_Chr7g0238871 Rosa chinensis HOM05D005338 ORTHO05D006550 2.4e-23 112.8 102 53.9
Hma1.2p1_0023F.1_g015170 Hydrangea macrophylla HOM05D005338 ORTHO05D006550 2.0e-22 109.8 109 49.5
Solyc03g046360.3 Solanum lycopersicum HOM05D005338 ORTHO05D006550 3.4e-17 92.4 161 34.8
BcaC04g23293 Brassica carinata HOM05D005338 ORTHO05D006550 2.6e-09 66.2 56 53.6
Sopen03g021680 Solanum pennellii HOM05D005338 ORTHO05D006550 2.6e-09 66.2 138 30.4
Sopen00g011030 Solanum pennellii HOM05D005338 ORTHO05D006550 7.5e-09 64.7 55 49.1
RcHm_v2.0_Chr7g0238881 Rosa chinensis HOM05D005338 ORTHO05D006550 2.4e-07 59.7 55 50.9


User provided reference genes

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