Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO231G0026 Selaginella moellendorffii HOM05D004769 ORTHO05D005605 2.7e-147 525.8 369 100.0
SMO351G0501 Selaginella moellendorffii HOM05D004769 ORTHO05D005605 3.7e-96 355.9 401 76.8
BolC4t25993H Brassica oleracea HOM05D004769 ORTHO05D005605 1.1e-52 211.5 371 49.6
C04p44180 Brassica napus HOM05D004769 ORTHO05D005605 1.9e-52 210.7 371 49.9
TAR375G0174 Trochodendron aralioides HOM05D004769 ORTHO05D005605 5.6e-52 209.1 384 47.7
A04p10540 Brassica napus HOM05D004769 ORTHO05D005605 2.8e-51 206.8 371 52.3
Aqoxy5G00268 Aquilegia oxysepala HOM05D004769 ORTHO05D005605 1.8e-50 204.1 375 51.5
COL.COLO4_05842 Corchorus olitorius HOM05D004769 ORTHO05D005605 2.4e-50 203.8 373 42.9
Gohir.A08G052900 Gossypium hirsutum HOM05D004769 ORTHO05D005605 6.8e-50 202.2 197 57.4
Gohir.D08G062500 Gossypium hirsutum HOM05D004769 ORTHO05D005605 6.8e-50 202.2 197 57.4
Gorai.004G064700 Gossypium raimondii HOM05D004769 ORTHO05D005605 6.8e-50 202.2 197 57.4
FvH4_4g06670 Fragaria vesca HOM05D004769 ORTHO05D005605 1.2e-49 201.4 195 59.5
FAN07G0829 Fragaria x ananassa HOM05D004769 ORTHO05D005605 1.2e-49 201.4 195 59.5
FAN12G3741 Fragaria x ananassa HOM05D004769 ORTHO05D005605 1.2e-49 201.4 195 59.5
FAN17G2568 Fragaria x ananassa HOM05D004769 ORTHO05D005605 1.2e-49 201.4 191 59.7
FAN22G0974 Fragaria x ananassa HOM05D004769 ORTHO05D005605 1.2e-49 201.4 191 59.7
AUR62017457 Chenopodium quinoa HOM05D004769 ORTHO05D005605 1.5e-49 201.1 374 46.0
Sp7g05100 Schrenkiella parvula HOM05D004769 ORTHO05D005605 1.5e-49 201.1 372 44.4
Lalb_Chr04g0251441 Lupinus albus HOM05D004769 ORTHO05D005605 2.6e-49 200.3 195 57.4
Thecc.04G060900 Theobroma cacao HOM05D004769 ORTHO05D005605 2.6e-49 200.3 196 57.7
ATR0083G043 Amborella trichopoda HOM05D004769 ORTHO05D005605 3.4e-49 199.9 395 50.1
Lalb_Chr17g0345901 Lupinus albus HOM05D004769 ORTHO05D005605 4.4e-49 199.5 195 57.9
Zm00001eb377290 Zea mays HOM05D004769 ORTHO05D005605 4.4e-49 199.5 377 42.7
BcaC02g09560 Brassica carinata HOM05D004769 ORTHO05D005605 5.8e-49 199.1 369 48.2
Phvul.008G239200 Phaseolus vulgaris HOM05D004769 ORTHO05D005605 7.6e-49 198.7 195 57.4
Prupe.1G069400 Prunus persica HOM05D004769 ORTHO05D005605 9.9e-49 198.4 195 57.9
GSVIVG01026312001 Vitis vinifera HOM05D004769 ORTHO05D005605 9.9e-49 198.4 379 49.1
BraA04t16720Z Brassica rapa HOM05D004769 ORTHO05D005605 1.7e-48 197.6 371 54.2
TWI74G1557 Tripterygium wilfordii HOM05D004769 ORTHO05D005605 1.7e-48 197.6 196 57.7
HPP92_017811 Vanilla planifolia HOM05D004769 ORTHO05D005605 1.7e-48 197.6 387 48.6
VMungo0647G0921 Vigna mungo HOM05D004769 ORTHO05D005605 1.7e-48 197.6 195 57.4
Ca_05772_v3 Cicer arietinum L. HOM05D004769 ORTHO05D005605 2.9e-48 196.8 372 43.0
RcHm_v2.0_Chr4g0398571 Rosa chinensis HOM05D004769 ORTHO05D005605 2.9e-48 196.8 191 58.6
Glyma.14G211600 Glycine max HOM05D004769 ORTHO05D005605 4.9e-48 196.1 197 56.9
MapolyY_B0025 Marchantia polymorpha HOM05D004769 ORTHO05D005605 6.4e-48 195.7 221 53.4
Medtr5g077180 Medicago truncatula HOM05D004769 ORTHO05D005605 8.4e-48 195.3 398 50.0
MD16G1242400 Malus domestica HOM05D004769 ORTHO05D005605 1.1e-47 194.9 195 57.4
SHI30114 Sapria himalayana HOM05D002544 ORTHO05D007856 1.4e-47 194.5 197 56.3
THA.LOC104823824 Tarenaya hassleriana HOM05D004769 ORTHO05D005605 1.9e-47 194.1 377 52.3
arahy.Tifrunner.gnm1.ann1.SAK0JK Arachis hypogaea HOM05D004769 ORTHO05D005605 2.4e-47 193.7 211 53.1
CiPaw.03G077600 Carya illinoinensis HOM05D004769 ORTHO05D005605 2.4e-47 193.7 196 56.6
ClCG01G008650 Citrullus lanatus HOM05D004769 ORTHO05D005605 2.4e-47 193.7 196 56.6
Potri.017G144121 Populus trichocarpa HOM05D004769 ORTHO05D005605 2.4e-47 193.7 195 56.9
Lsat_1_v5_gn_8_18601 Lactuca sativa HOM05D004769 ORTHO05D005605 3.2e-47 193.4 381 48.6
TPR.G9995 Trifolium pratense HOM05D004769 ORTHO05D005605 4.2e-47 193.0 195 56.4
Cc07_g12960 Coffea canephora HOM05D004769 ORTHO05D005605 5.4e-47 192.6 401 43.6
PGR042G1215 Punica granatum HOM05D004769 ORTHO05D005605 7.1e-47 192.2 194 56.7
TWI77G0470 Tripterygium wilfordii HOM05D004769 ORTHO05D005605 7.1e-47 192.2 195 55.4
Carub.0007s3249 Capsella rubella HOM05D004769 ORTHO05D005605 1.2e-46 191.4 387 49.4
Cpa.g.sc178.7 Carica papaya HOM05D004769 ORTHO05D005605 1.2e-46 191.4 198 55.6
Mapoly0017s0020 Marchantia polymorpha HOM05D004769 ORTHO05D005605 1.2e-46 191.4 192 57.8
Cfa007768 Carpinus fangiana HOM05D004769 ORTHO05D005605 1.6e-46 191.0 198 55.6
MBI04_g35346_MAGBIO Magnolia biondii HOM05D004769 ORTHO05D005605 1.6e-46 191.0 394 50.0
Rhsim10G0183300 Rhododendron simsii HOM05D004769 ORTHO05D005605 1.6e-46 191.0 373 55.8
Sabra04G0050400 Salix brachista HOM05D004769 ORTHO05D005605 2.1e-46 190.7 226 51.3
CANSAT78G2338 Cannabis sativa HOM05D004769 ORTHO05D005605 2.7e-46 190.3 196 55.1
Nn1g02020 Nelumbo nucifera HOM05D004769 ORTHO05D005605 2.7e-46 190.3 198 55.1
PSO017G5633 Papaver somniferum HOM05D004769 ORTHO05D005605 2.7e-46 190.3 412 47.3
MELO3C025080.2 Cucumis melo HOM05D004769 ORTHO05D005605 3.5e-46 189.9 196 56.1
CsaV3_5G020660 Cucumis sativus L. HOM05D004769 ORTHO05D005605 3.5e-46 189.9 196 56.1
Atru.chr1.1954 Acer truncatum HOM05D004769 ORTHO05D005605 4.6e-46 189.5 407 48.4
vmacro20487 Vaccinium macrocarpon HOM05D004769 ORTHO05D005605 4.6e-46 189.5 195 56.4
ECA233G3826 Erigeron canadensis HOM05D000002 ORTHO05D000001 6.0e-46 189.1 408 40.4
Sed0006929 Sechium edule HOM05D004769 ORTHO05D005605 7.8e-46 188.7 200 54.5
AUR62032521 Chenopodium quinoa HOM05D004769 ORTHO05D005605 1.0e-45 188.3 369 37.7
Potri.004G075700 Populus trichocarpa HOM05D004769 ORTHO05D005605 1.0e-45 188.3 446 39.5
Hma1.2p1_0034F.1_g021310 Hydrangea macrophylla HOM05D004769 ORTHO05D005605 1.3e-45 188.0 190 55.8
HanXRQChr08g0218471 Helianthus annuus HOM05D004769 ORTHO05D005605 2.3e-45 187.2 195 56.9
MD13G1237000 Malus domestica HOM05D004769 ORTHO05D005605 2.3e-45 187.2 407 45.9
Sc11g0004750 Simmondsia chinensis HOM05D004769 ORTHO05D005605 2.3e-45 187.2 409 48.2
TAR374G1377 Trochodendron aralioides HOM05D004769 ORTHO05D005605 3.9e-45 186.4 399 45.1
Actinidia35715 Actinidia chinensis HOM05D004769 ORTHO05D005605 6.6e-45 185.7 394 40.9
Hma1.2p1_0158F.1_g069800 Hydrangea macrophylla HOM05D004769 ORTHO05D005605 6.6e-45 185.7 379 42.5
CARHR215720 Cardamine hirsuta HOM05D004769 ORTHO05D005605 1.1e-44 184.9 366 50.0
Dinv19070 Davidia involucrata HOM05D004769 ORTHO05D005605 1.1e-44 184.9 413 40.0
Pp3c14_14980 Physcomitrium patens HOM05D004769 ORTHO05D005605 1.1e-44 184.9 195 54.4
Pp3c14_14989 Physcomitrium patens HOM05D004769 ORTHO05D005605 1.1e-44 184.9 195 54.4
Haze_14305 Corylus avellana HOM05D004769 ORTHO05D005605 1.9e-44 184.1 424 44.6
DCAR_028435 Daucus carota HOM05D004769 ORTHO05D005605 1.9e-44 184.1 200 56.0
AL7G46000 Arabidopsis lyrata HOM05D004769 ORTHO05D005605 3.3e-44 183.3 384 46.9
Thhalv10027788m.g Eutrema salsugineum HOM05D004769 ORTHO05D005605 3.3e-44 183.3 371 48.8
EL10Ac6g13916 Beta vulgaris HOM05D004769 ORTHO05D005605 4.3e-44 183.0 418 45.5
CSS0001926 Camellia sinensis var. sinensis HOM05D004769 ORTHO05D005605 4.3e-44 183.0 197 54.3
Lj2C513G15 Lonicera japonica HOM05D004769 ORTHO05D005605 5.6e-44 182.6 373 37.3
PSO170G3102 Papaver somniferum HOM05D004769 ORTHO05D005605 5.6e-44 182.6 181 58.0
Eucgr.J01630 Eucalyptus grandis HOM05D004769 ORTHO05D005605 1.3e-43 181.4 180 57.2
Glyma.02G241900 Glycine max HOM05D004769 ORTHO05D005605 1.3e-43 181.4 239 47.7
Peaxi162Scf00442g00627 Petunia axillaris HOM05D004769 ORTHO05D005605 2.1e-43 180.6 190 54.2
CAN.G525.4 Capsicum annuum HOM05D004769 ORTHO05D005605 2.8e-43 180.3 196 53.1
Lj4A255T24 Lonicera japonica HOM05D004769 ORTHO05D005605 1.1e-42 178.3 397 39.3
Os05g0178900 Oryza sativa ssp. japonica HOM05D004769 ORTHO05D005605 1.8e-42 177.6 414 44.0
Ah.02g128700 Amaranthus hybridus HOM05D004769 ORTHO05D005605 3.1e-42 176.8 256 44.1
Nitab4.5_0000574g0160 Nicotiana tabacum HOM05D004769 ORTHO05D005605 5.3e-42 176.0 190 53.2
MSTRG.3686 Avicennia marina HOM05D004769 ORTHO05D005605 6.9e-42 175.6 196 53.1
CBR_g22246 Chara braunii HOM05D004769 ORTHO05D005605 1.2e-41 174.9 192 54.2
Solyc04g014560.4 Solanum lycopersicum HOM05D004769 ORTHO05D005605 1.2e-41 174.9 190 52.6
PGSC0003DMG400023617 Solanum tuberosum HOM05D004769 ORTHO05D005605 1.2e-41 174.9 190 52.6
Sopen04g006720 Solanum pennellii HOM05D004769 ORTHO05D005605 1.5e-41 174.5 190 52.6
SGA_v2.0_scaffold45G17131 Striga asiatica HOM05D004769 ORTHO05D005605 1.5e-41 174.5 191 55.5
unitig_748.g7024 Utricularia gibba HOM05D004769 ORTHO05D005605 4.4e-41 172.9 196 53.1
Pp3c17_5870 Physcomitrium patens HOM05D004769 ORTHO05D005605 7.6e-41 172.2 182 53.3
SGA_v2.0_scaffold115G32089 Striga asiatica HOM05D004769 ORTHO05D005605 9.9e-41 171.8 197 53.8
Oeu032315.1 Olea europaea HOM05D004769 ORTHO05D005605 5.4e-39 166.0 439 40.5
QL02p060102 Quercus lobata HOM05D004769 ORTHO05D005605 1.2e-38 164.9 275 41.1
Migut.K01113 Erythranthe guttata HOM05D004769 ORTHO05D005605 1.6e-38 164.5 219 47.5
Migut.H02243 Erythranthe guttata HOM05D004769 ORTHO05D005605 6.0e-38 162.5 390 40.3
Oeu029083.1 Olea europaea HOM05D004769 ORTHO05D005605 5.1e-37 159.5 455 42.0
AT5G37370 Arabidopsis thaliana HOM05D004769 ORTHO05D005605 3.5e-30 136.7 274 52.6
LjContig00141g0012428 Lotus japonicus HOM05D004769 ORTHO05D005605 7.9e-30 135.6 421 33.5
Duzib211G0206 Durio zibethinus HOM05D004769 ORTHO05D005605 1.3e-29 134.8 93 73.1
Manes.02G080000 Manihot esculenta HOM05D004769 ORTHO05D005605 1.3e-29 134.8 93 74.2
CDE02G1258 Ceratophyllum demersum HOM05D004769 ORTHO05D005605 2.3e-29 134.0 270 45.6
Cre03.g178300 Chlamydomonas reinhardtii HOM05D004769 ORTHO05D005605 1.5e-28 131.3 190 42.6
Dinv28230 Davidia involucrata HOM05D004769 ORTHO05D005605 3.3e-28 130.2 297 42.8
Psat2g044720 Pisum sativum HOM05D004769 ORTHO05D005605 7.4e-28 129.0 83 77.1
Ciclev10015797m.g Citrus clementina HOM05D004769 ORTHO05D005605 1.3e-27 128.3 145 51.7
SEGI_40758 Sequoiadendron giganteum HOM05D004769 ORTHO05D005605 2.1e-27 127.5 92 70.7
Sed0026946 Sechium edule HOM05D004769 ORTHO05D005605 4.8e-27 126.3 94 70.2
Zm00001eb283000 Zea mays HOM05D004769 ORTHO05D005605 1.1e-26 125.2 287 51.2
Lalb_Chr10g0104101 Lupinus albus HOM05D004769 ORTHO05D005605 2.0e-25 120.9 84 73.8
MCO07G113 Micromonas commoda HOM05D004769 ORTHO05D005605 1.9e-23 114.4 201 38.3
Nitab4.5_0005193g0040 Nicotiana tabacum HOM05D004769 ORTHO05D005605 3.2e-23 113.6 92 63.0
ATR0127G005 Amborella trichopoda HOM05D004769 ORTHO05D005605 3.0e-21 107.1 78 70.5
PRCOL_00000163 Prasinoderma coloniale HOM05D004769 ORTHO05D005605 7.4e-20 102.4 181 39.8
CDE02G3274 Ceratophyllum demersum HOM05D004769 ORTHO05D005605 1.9e-15 87.8 121 44.6
Sed0001997 Sechium edule HOM05D004769 ORTHO05D005605 1.9e-15 87.8 105 43.8
FAN05G2233 Fragaria x ananassa HOM05D004769 ORTHO05D005605 1.2e-14 85.1 54 81.5
SMO231G0020 Selaginella moellendorffii HOM05D004769 ORTHO05D005605 1.2e-14 85.1 83 56.6
Lalb_Chr10g0104091 Lupinus albus HOM05D004769 ORTHO05D005605 1.6e-14 84.7 61 65.6
Ciclev10018227m.g Citrus clementina HOM05D004769 ORTHO05D005605 2.1e-14 84.3 61 63.9
Zm00001eb046660 Zea mays HOM05D004769 ORTHO05D005605 2.7e-14 84.0 58 69.0
CSS0036345 Camellia sinensis var. sinensis HOM05D004769 ORTHO05D005605 3.5e-14 83.6 63 68.3
CDE02G3573 Ceratophyllum demersum HOM05D004769 ORTHO05D005605 3.5e-14 83.6 236 41.5
Zm00001eb221230 Zea mays HOM05D004769 ORTHO05D005605 1.0e-13 82.0 57 68.4
Aa31LG9G17630 Aethionema arabicum HOM05D004769 ORTHO05D005605 1.3e-13 81.6 59 61.0
CDE02G0598 Ceratophyllum demersum HOM05D004769 ORTHO05D005605 1.8e-13 81.3 61 60.7
FAN07G1815 Fragaria x ananassa HOM05D004769 ORTHO05D005605 3.0e-13 80.5 54 77.8
Zm00001eb361740 Zea mays HOM05D004769 ORTHO05D005605 3.0e-13 80.5 63 63.5
AagrBONN_evm.TU.Sc2ySwM_344.2680 Anthoceros agrestis HOM05D004769 ORTHO05D005605 1.5e-12 78.2 234 51.7
HanXRQChr14g0429111 Helianthus annuus HOM05D004769 ORTHO05D005605 1.5e-12 78.2 65 60.0
SMO351G0097 Selaginella moellendorffii HOM05D007698 ORTHO05D009663 1.5e-12 78.2 57 70.2
Gohir.A02G124601 Gossypium hirsutum HOM05D004769 ORTHO05D005605 1.6e-11 74.7 58 62.1
HanXRQChr14g0429051 Helianthus annuus HOM05D004769 ORTHO05D005605 2.8e-11 73.9 54 64.8
Oeu048972.1 Olea europaea HOM05D004769 ORTHO05D005605 3.7e-11 73.6 61 57.4
CSS0045560 Camellia sinensis var. sinensis HOM05D004769 ORTHO05D005605 1.5e-09 68.2 46 63.0
Zm00001eb313200 Zea mays HOM05D004769 ORTHO05D005605 5.5e-07 59.7 43 65.1
Gohir.A08G086562 Gossypium hirsutum HOM05D004769 ORTHO05D005605 2.1e-06 57.8 45 60.0


User provided reference genes

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