Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO228G0083 Selaginella moellendorffii HOM05D005896 ORTHO05D007250 0.0e+00 1715.7 858 100.0
Mapoly0266s0003 Marchantia polymorpha HOM05D005896 ORTHO05D007250 1.5e-289 999.6 898 56.3
SEGI_19702 Sequoiadendron giganteum HOM05D005896 ORTHO05D007250 7.9e-283 977.2 892 55.7
Manes.09G113900 Manihot esculenta HOM05D005896 ORTHO05D007250 1.0e-282 976.9 884 55.7
Actinidia11539 Actinidia chinensis HOM05D005896 ORTHO05D007250 3.0e-282 975.3 891 54.8
ECA236G3210 Erigeron canadensis HOM05D005896 ORTHO05D007250 3.0e-282 975.3 871 55.8
Sabra06G0082600 Salix brachista HOM05D005896 ORTHO05D007250 3.0e-282 975.3 883 55.3
CANSAT35G1655 Cannabis sativa HOM05D005896 ORTHO05D007250 3.9e-282 974.9 878 56.0
HanXRQChr12g0363731 Helianthus annuus HOM05D005896 ORTHO05D007250 5.1e-282 974.5 889 55.2
Lsat_1_v5_gn_8_105740 Lactuca sativa HOM05D005896 ORTHO05D007250 1.1e-281 973.4 872 56.3
CAN.G738.1 Capsicum annuum HOM05D005896 ORTHO05D007250 1.5e-281 973.0 882 55.0
FvH4_6g10330 Fragaria vesca HOM05D005896 ORTHO05D007250 2.5e-281 972.2 895 55.1
Atru.chr8.2358 Acer truncatum HOM05D005896 ORTHO05D007250 7.4e-281 970.7 895 54.1
PSO339G6300 Papaver somniferum HOM05D005896 ORTHO05D007250 1.3e-280 969.9 876 55.9
Potri.006G106000 Populus trichocarpa HOM05D005896 ORTHO05D007250 1.6e-280 969.5 890 54.4
Prupe.6G287100 Prunus persica HOM05D005896 ORTHO05D007250 6.3e-280 967.6 880 56.2
Thecc.05G004100 Theobroma cacao HOM05D005896 ORTHO05D007250 8.2e-280 967.2 891 54.9
Cc06_g00650 Coffea canephora HOM05D005896 ORTHO05D007250 1.4e-279 966.5 892 54.7
RcHm_v2.0_Chr3g0461101 Rosa chinensis HOM05D005896 ORTHO05D007250 2.4e-279 965.7 891 55.0
Sopen10g034850 Solanum pennellii HOM05D005896 ORTHO05D007250 1.2e-278 963.4 894 53.9
Nn2g11051 Nelumbo nucifera HOM05D005896 ORTHO05D007250 1.5e-278 963.0 882 55.1
TWI77G0262 Tripterygium wilfordii HOM05D005896 ORTHO05D007250 1.5e-278 963.0 878 55.2
VMungo1383G2905 Vigna mungo HOM05D005896 ORTHO05D007250 2.0e-278 962.6 893 54.2
Dinv35431 Davidia involucrata HOM05D005896 ORTHO05D007250 5.9e-278 961.1 894 54.1
QL07p033519 Quercus lobata HOM05D005896 ORTHO05D007250 2.2e-277 959.1 876 54.8
FAN02G1083 Fragaria x ananassa HOM05D005896 ORTHO05D007250 2.9e-277 958.7 901 54.6
Psat3g120600 Pisum sativum HOM05D005896 ORTHO05D007250 2.9e-277 958.7 879 54.4
MD12G1182400 Malus domestica HOM05D005896 ORTHO05D007250 5.0e-277 958.0 880 55.6
GSVIVG01030240001 Vitis vinifera HOM05D005896 ORTHO05D007250 5.0e-277 958.0 881 54.5
Migut.J00081 Erythranthe guttata HOM05D005896 ORTHO05D007250 6.5e-277 957.6 880 55.6
Gorai.012G119800 Gossypium raimondii HOM05D005896 ORTHO05D007250 6.5e-277 957.6 890 54.7
Gohir.D04G136000 Gossypium hirsutum HOM05D005896 ORTHO05D007250 1.1e-276 956.8 890 54.7
FAN05G0609 Fragaria x ananassa HOM05D005896 ORTHO05D007250 1.9e-276 956.1 900 54.4
Phvul.008G089700 Phaseolus vulgaris HOM05D005896 ORTHO05D007250 1.9e-276 956.1 893 53.3
Thhalv10020004m.g Eutrema salsugineum HOM05D005896 ORTHO05D007250 2.5e-276 955.7 873 54.6
AL3G19830 Arabidopsis lyrata HOM05D005896 ORTHO05D007250 3.2e-276 955.3 869 54.9
Medtr7g071990 Medicago truncatula HOM05D005896 ORTHO05D007250 4.2e-276 954.9 882 53.7
FAN14G5183 Fragaria x ananassa HOM05D005896 ORTHO05D007250 1.2e-275 953.4 905 54.3
MELO3C009120.2 Cucumis melo HOM05D005896 ORTHO05D007250 1.6e-275 953.0 875 55.3
Os07g0691200 Oryza sativa ssp. japonica HOM05D005896 ORTHO05D007250 6.1e-275 951.0 892 53.9
MSTRG.5530 Avicennia marina HOM05D005896 ORTHO05D007250 1.0e-274 950.3 876 54.5
Sed0010587 Sechium edule HOM05D005896 ORTHO05D007250 1.3e-274 949.9 879 54.9
Aqoxy2G00762 Aquilegia oxysepala HOM05D005896 ORTHO05D007250 3.0e-274 948.7 879 54.6
AT3G08840 Arabidopsis thaliana HOM05D005896 ORTHO05D007250 6.7e-274 947.6 867 54.8
Glyma.09G279500 Glycine max HOM05D005896 ORTHO05D007250 8.7e-274 947.2 893 53.1
ATR0681G081 Amborella trichopoda HOM05D005896 ORTHO05D007250 1.9e-273 946.0 893 54.2
Ca_26097_v3 Cicer arietinum L. HOM05D005896 ORTHO05D007250 1.9e-273 946.0 881 53.9
FAN05G5239 Fragaria x ananassa HOM05D005896 ORTHO05D007250 1.9e-273 946.0 926 52.9
Glyma.18G209600 Glycine max HOM05D005896 ORTHO05D007250 3.3e-273 945.3 888 53.2
Gohir.A04G096200 Gossypium hirsutum HOM05D005896 ORTHO05D007250 3.3e-273 945.3 889 54.3
Eucgr.A00643 Eucalyptus grandis HOM05D005896 ORTHO05D007250 4.3e-273 944.9 852 56.8
CsaV3_3G033280 Cucumis sativus L. HOM05D005896 ORTHO05D007250 5.7e-273 944.5 881 54.8
THA.LOC104823308 Tarenaya hassleriana HOM05D005896 ORTHO05D007250 1.3e-272 943.3 872 54.7
MD04G1168900 Malus domestica HOM05D005896 ORTHO05D007250 2.2e-272 942.6 877 54.8
BolC3t16668H Brassica oleracea HOM05D005896 ORTHO05D007250 3.7e-272 941.8 883 54.0
A03p36350 Brassica napus HOM05D005896 ORTHO05D007250 4.8e-272 941.4 869 54.8
Sc02g0000680 Simmondsia chinensis HOM05D005896 ORTHO05D007250 4.8e-272 941.4 882 54.3
BcaC01g04196 Brassica carinata HOM05D005896 ORTHO05D007250 1.1e-271 940.3 883 54.0
HPP92_013852 Vanilla planifolia HOM05D005896 ORTHO05D007250 1.4e-271 939.9 876 53.5
BraA03t12806Z Brassica rapa HOM05D005896 ORTHO05D007250 2.4e-271 939.1 869 54.7
Nitab4.5_0004057g0040 Nicotiana tabacum HOM05D005896 ORTHO05D007250 2.4e-271 939.1 879 54.3
Lj1g0024727 Lotus japonicus HOM05D005896 ORTHO05D007250 4.1e-271 938.3 891 53.8
BcaB04g18571 Brassica carinata HOM05D005896 ORTHO05D007250 5.3e-271 937.9 886 53.6
CSS0019926 Camellia sinensis var. sinensis HOM05D005896 ORTHO05D007250 2.0e-270 936.0 879 54.3
arahy.Tifrunner.gnm1.ann1.2FTV5P Arachis hypogaea HOM05D005896 ORTHO05D007250 2.2e-269 932.6 888 53.0
CSS0029745 Camellia sinensis var. sinensis HOM05D005896 ORTHO05D007250 2.9e-269 932.2 878 53.9
Lalb_Chr01g0023511 Lupinus albus HOM05D005896 ORTHO05D007250 3.8e-269 931.8 892 52.6
arahy.Tifrunner.gnm1.ann1.Q3Q3XE Arachis hypogaea HOM05D005896 ORTHO05D007250 1.9e-268 929.5 888 52.6
BcaB04g20289 Brassica carinata HOM05D005896 ORTHO05D007250 2.1e-267 926.0 881 52.9
SalBow5G4224 Salvia bowleyana HOM05D005896 ORTHO05D007250 3.6e-267 925.2 900 53.1
Carub.0003s0795 Capsella rubella HOM05D005896 ORTHO05D007250 4.6e-267 924.9 865 54.2
vmacro20337 Vaccinium macrocarpon HOM05D005896 ORTHO05D007250 4.6e-267 924.9 942 51.3
BcaC09g49362 Brassica carinata HOM05D005896 ORTHO05D007250 2.6e-265 919.1 880 52.2
A01p29640 Brassica napus HOM05D005896 ORTHO05D007250 3.3e-265 918.7 881 52.1
C03p43970 Brassica napus HOM05D005896 ORTHO05D007250 2.8e-264 915.6 861 54.0
Zm00001eb111890 Zea mays HOM05D005896 ORTHO05D007250 2.8e-264 915.6 868 52.6
Rhsim05G0227300 Rhododendron simsii HOM05D005896 ORTHO05D007250 5.3e-263 911.4 875 53.6
Solyc10g085400.3 Solanum lycopersicum HOM05D005896 ORTHO05D007250 2.2e-261 906.0 895 52.2
BraA01t03093Z Brassica rapa HOM05D005896 ORTHO05D007250 1.2e-259 900.2 896 51.2
C01p37440 Brassica napus HOM05D005896 ORTHO05D007250 7.9e-259 897.5 885 51.8
ClCG10G022550 Citrullus lanatus HOM05D005896 ORTHO05D007250 1.4e-258 896.7 973 49.1
Haze_21109 Corylus avellana HOM05D005896 ORTHO05D007250 2.6e-257 892.5 875 52.8
AUR62006318 Chenopodium quinoa HOM05D005896 ORTHO05D007250 7.4e-257 891.0 912 51.3
Nitab4.5_0001703g0070 Nicotiana tabacum HOM05D005896 ORTHO05D007250 2.2e-253 879.4 876 52.4
Lj2A64G51 Lonicera japonica HOM05D005896 ORTHO05D007250 5.0e-253 878.2 889 51.4
TAR623G1464 Trochodendron aralioides HOM05D005896 ORTHO05D007250 1.5e-252 876.7 909 50.8
TPR.G18656 Trifolium pratense HOM05D005896 ORTHO05D007250 3.2e-252 875.5 827 53.0
Cfa017090 Carpinus fangiana HOM05D005896 ORTHO05D007250 1.3e-248 863.6 881 51.1
DCAR_028898 Daucus carota HOM05D005896 ORTHO05D007250 3.7e-248 862.1 876 50.8
Aa31LG5G18810 Aethionema arabicum HOM05D005896 ORTHO05D007250 1.7e-245 853.2 818 52.6
CiPaw.09G216900 Carya illinoinensis HOM05D005896 ORTHO05D007250 6.5e-245 851.3 812 53.2
COL.COLO4_14429 Corchorus olitorius HOM05D005896 ORTHO05D007250 3.0e-242 842.4 885 50.5
HPP92_013866 Vanilla planifolia HOM05D005896 ORTHO05D007250 8.8e-242 840.9 873 49.8
Ciclev10011082m.g Citrus clementina HOM05D005896 ORTHO05D007250 2.6e-241 839.3 794 53.7
FAN09G0048 Fragaria x ananassa HOM05D005896 ORTHO05D007250 2.4e-239 832.8 896 50.7
PRCOL_00001217 Prasinoderma coloniale HOM05D005896 ORTHO05D007250 1.4e-215 753.8 911 48.2
FAN14G5591 Fragaria x ananassa HOM05D005896 ORTHO05D007250 1.3e-213 747.3 863 48.2
Pp3c18_18940 Physcomitrium patens HOM05D005896 ORTHO05D007250 3.5e-206 722.6 679 54.1
A03p36380 Brassica napus HOM05D005896 ORTHO05D007250 5.1e-205 718.8 707 52.6
CAN.G1288.7 Capsicum annuum HOM05D005896 ORTHO05D007250 4.2e-191 672.5 783 46.7
AagrBONN_evm.TU.Sc2ySwM_362.2825 Anthoceros agrestis HOM05D005896 ORTHO05D007250 3.6e-187 659.4 614 55.4
HanXRQChr16g0509701 Helianthus annuus HOM05D005896 ORTHO05D007250 6.4e-176 622.1 650 50.8
Peaxi162Scf00009g01011 Petunia axillaris HOM05D005896 ORTHO05D007250 2.1e-174 617.1 604 52.0
Hma1.2p1_2300F.1_g319236 Hydrangea macrophylla HOM05D005896 ORTHO05D007250 2.1e-171 607.1 571 53.9
Hma1.2p1_2300F.1_g319233 Hydrangea macrophylla HOM05D005896 ORTHO05D007250 8.2e-171 605.1 581 53.2
Actinidia26603 Actinidia chinensis HOM05D005896 ORTHO05D007250 5.9e-161 572.4 573 51.7
CARHR083150 Cardamine hirsuta HOM05D005896 ORTHO05D007250 5.5e-151 539.3 546 49.8
MBI15_g29358_MAGBIO Magnolia biondii HOM05D005896 ORTHO05D007250 2.2e-144 517.3 474 54.6
BolC1t03711H Brassica oleracea HOM05D005896 ORTHO05D007250 4.8e-139 499.6 529 49.0
Oeu023744.1 Olea europaea HOM05D005896 ORTHO05D007250 2.3e-133 480.7 448 52.5
AUR62026359 Chenopodium quinoa HOM05D005896 ORTHO05D007250 2.6e-132 477.2 868 36.8
PGSC0003DMG400011105 Solanum tuberosum HOM05D005896 ORTHO05D007250 1.1e-122 445.3 400 53.5
Cpa.g.c34215 Carica papaya HOM05D005896 ORTHO05D007250 1.8e-122 444.5 404 55.9
Oeu033807.1 Olea europaea HOM05D005896 ORTHO05D007250 4.4e-100 370.2 312 58.7
Hma1.2p1_2300F.1_g319240 Hydrangea macrophylla HOM05D005896 ORTHO05D007250 6.8e-85 319.7 267 59.2
BolC1t03712H Brassica oleracea HOM05D005896 ORTHO05D007250 2.7e-81 307.8 286 54.2
Peaxi162Scf00009g01010 Petunia axillaris HOM05D005896 ORTHO05D007250 3.4e-76 290.8 257 55.6
Hma1.2p1_3169F.1_g333550 Hydrangea macrophylla HOM05D005896 ORTHO05D007250 5.6e-63 246.9 339 44.0
Nn2g16051 Nelumbo nucifera HOM05D005896 ORTHO05D007250 1.7e-59 235.3 212 55.2
SEGI_37805 Sequoiadendron giganteum HOM05D005896 ORTHO05D007250 1.6e-57 228.8 172 62.2
CBR_g45569 Chara braunii HOM05D005896 ORTHO05D007250 3.1e-53 214.5 216 51.9
CBR_g38233 Chara braunii HOM05D005896 ORTHO05D007250 6.9e-53 213.4 251 46.2
Hund03771 Selenicereus undatus HOM05D005896 ORTHO05D007250 1.1e-42 179.5 240 42.1
MBI15_g29355_MAGBIO Magnolia biondii HOM05D005896 ORTHO05D007250 3.3e-31 141.4 196 44.4
Solyc09g031528.1 Solanum lycopersicum HOM05D005896 ORTHO05D007250 1.8e-29 135.6 95 65.3
CBR_g38232 Chara braunii HOM05D000019 ORTHO05D000048 9.4e-26 123.2 260 36.5
MBI15_g25466_MAGBIO Magnolia biondii HOM05D005896 ORTHO05D007250 9.4e-26 123.2 142 49.3
Cre15.g635650 Chlamydomonas reinhardtii HOM05D005896 ORTHO05D007250 7.4e-23 113.6 438 23.7
Solyc09g015130.4 Solanum lycopersicum HOM05D005896 ORTHO05D007250 3.6e-17 94.7 58 75.9
TPR.G7700 Trifolium pratense HOM05D005896 ORTHO05D007250 4.8e-14 84.3 59 67.8
Glyma.16G116800 Glycine max HOM05D005896 ORTHO05D007250 9.8e-07 60.1 67 46.3
Solyc07g032788.1 Solanum lycopersicum HOM05D005896 ORTHO05D007250 8.3e-06 57.0 37 67.6


User provided reference genes

Program Settings