Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO203G0012 Selaginella moellendorffii HOM05D006608 ORTHO05D008316 4.0e-96 354.8 179 100.0
Actinidia35508 Actinidia chinensis HOM05D006608 ORTHO05D008316 2.1e-65 252.7 179 64.2
Phvul.001G224100 Phaseolus vulgaris HOM05D006608 ORTHO05D008316 1.1e-64 250.4 179 65.4
VMungo1383G0735 Vigna mungo HOM05D006608 ORTHO05D008316 1.1e-64 250.4 179 65.9
Lj2g0018741 Lotus japonicus HOM05D006608 ORTHO05D008316 3.1e-64 248.8 179 64.2
Glyma.03G230300 Glycine max HOM05D006608 ORTHO05D008316 4.0e-64 248.4 179 64.8
MSTRG.16414 Avicennia marina HOM05D006608 ORTHO05D008316 5.3e-64 248.1 179 63.1
Cfa006713 Carpinus fangiana HOM05D006608 ORTHO05D008316 9.0e-64 247.3 179 63.7
Dinv30914 Davidia involucrata HOM05D006608 ORTHO05D008316 9.0e-64 247.3 179 63.1
CSS0011542 Camellia sinensis var. sinensis HOM05D006608 ORTHO05D008316 1.5e-63 246.5 179 63.1
Haze_04048 Corylus avellana HOM05D006608 ORTHO05D008316 1.5e-63 246.5 179 63.7
Nitab4.5_0005908g0020 Nicotiana tabacum HOM05D006608 ORTHO05D008316 2.0e-63 246.1 179 64.2
Nitab4.5_0002750g0060 Nicotiana tabacum HOM05D006608 ORTHO05D008316 2.6e-63 245.7 179 64.2
Lalb_Chr04g0260371 Lupinus albus HOM05D006608 ORTHO05D008316 3.4e-63 245.4 179 62.6
Manes.08G109600 Manihot esculenta HOM05D006608 ORTHO05D008316 3.4e-63 245.4 179 64.2
Zm00001eb028550 Zea mays HOM05D006608 ORTHO05D008316 3.4e-63 245.4 178 65.2
arahy.Tifrunner.gnm1.ann1.0RV1NN Arachis hypogaea HOM05D006608 ORTHO05D008316 4.5e-63 245.0 174 64.9
Peaxi162Scf00299g00341 Petunia axillaris HOM05D006608 ORTHO05D008316 4.5e-63 245.0 179 62.0
Os07g0275100 Oryza sativa ssp. japonica HOM05D006608 ORTHO05D008316 5.8e-63 244.6 178 64.6
Mapoly0002s0119 Marchantia polymorpha HOM05D006608 ORTHO05D008316 7.6e-63 244.2 179 64.2
Potri.005G010700 Populus trichocarpa HOM05D006608 ORTHO05D008316 7.6e-63 244.2 179 63.1
THA.LOC104820562 Tarenaya hassleriana HOM05D006608 ORTHO05D008316 7.6e-63 244.2 179 63.1
Sabra05G0007800 Salix brachista HOM05D006608 ORTHO05D008316 1.0e-62 243.8 179 63.1
arahy.Tifrunner.gnm1.ann1.FYW6BY Arachis hypogaea HOM05D006608 ORTHO05D008316 1.3e-62 243.4 174 64.4
Thhalv10025982m.g Eutrema salsugineum HOM05D006608 ORTHO05D008316 1.7e-62 243.0 179 62.6
arahy.Tifrunner.gnm1.ann1.V41D0B Arachis hypogaea HOM05D006608 ORTHO05D008316 2.2e-62 242.7 176 63.1
COL.COLO4_05523 Corchorus olitorius HOM05D006608 ORTHO05D008316 2.2e-62 242.7 179 63.1
QL03p016892 Quercus lobata HOM05D006608 ORTHO05D008316 2.2e-62 242.7 174 64.4
CAN.G504.78 Capsicum annuum HOM05D006608 ORTHO05D008316 2.9e-62 242.3 178 62.9
Sabra05G0019000 Salix brachista HOM05D006608 ORTHO05D008316 3.8e-62 241.9 179 62.6
Hund21858 Selenicereus undatus HOM05D006608 ORTHO05D008316 3.8e-62 241.9 179 62.6
arahy.Tifrunner.gnm1.ann1.7ZK9KC Arachis hypogaea HOM05D006608 ORTHO05D008316 4.9e-62 241.5 176 62.5
A08p11770 Brassica napus HOM05D006608 ORTHO05D008316 4.9e-62 241.5 179 62.0
BraA08t33169Z Brassica rapa HOM05D006608 ORTHO05D008316 4.9e-62 241.5 179 62.0
CiPaw.08G154200 Carya illinoinensis HOM05D006608 ORTHO05D008316 4.9e-62 241.5 174 64.4
Ca_09291_v3 Cicer arietinum L. HOM05D006608 ORTHO05D008316 4.9e-62 241.5 179 63.1
C01p27450 Brassica napus HOM05D006608 ORTHO05D008316 6.5e-62 241.1 179 62.0
Cpa.g.sc48.186 Carica papaya HOM05D006608 ORTHO05D008316 6.5e-62 241.1 179 62.6
Ciclev10002108m.g Citrus clementina HOM05D006608 ORTHO05D008316 6.5e-62 241.1 179 63.1
TWI12G0784 Tripterygium wilfordii HOM05D006608 ORTHO05D008316 6.5e-62 241.1 179 62.6
A01p22060 Brassica napus HOM05D006608 ORTHO05D008316 8.4e-62 240.7 179 62.0
Duzib177G0608 Durio zibethinus HOM05D006608 ORTHO05D008316 8.4e-62 240.7 179 62.6
BcaC09g50245 Brassica carinata HOM05D006608 ORTHO05D008316 1.1e-61 240.4 179 61.5
AUR62006773 Chenopodium quinoa HOM05D006608 ORTHO05D008316 1.1e-61 240.4 179 63.1
Cc02_g35130 Coffea canephora HOM05D006608 ORTHO05D008316 1.1e-61 240.4 179 60.9
CsaV3_1G015710 Cucumis sativus L. HOM05D006608 ORTHO05D008316 1.1e-61 240.4 174 63.8
TAR362G0553 Trochodendron aralioides HOM05D006608 ORTHO05D008316 1.1e-61 240.4 179 62.0
vmacro01585 Vaccinium macrocarpon HOM05D006608 ORTHO05D008316 1.1e-61 240.4 174 64.9
BolC1t02685H Brassica oleracea HOM05D006608 ORTHO05D008316 1.4e-61 240.0 179 61.5
Pp3c25_7030 Physcomitrium patens HOM05D006608 ORTHO05D008316 1.4e-61 240.0 179 63.1
Sp7g13760 Schrenkiella parvula HOM05D006608 ORTHO05D008316 1.4e-61 240.0 179 61.5
Aa31LG2G11410 Aethionema arabicum HOM05D006608 ORTHO05D008316 1.9e-61 239.6 179 62.0
Ah.04g158480 Amaranthus hybridus HOM05D006608 ORTHO05D008316 2.5e-61 239.2 179 63.1
ECA240G1520 Erigeron canadensis HOM05D006608 ORTHO05D008316 2.5e-61 239.2 179 60.3
SGA_v2.0_scaffold4G01979 Striga asiatica HOM05D006608 ORTHO05D008316 2.5e-61 239.2 179 62.0
Thecc.05G325800 Theobroma cacao HOM05D006608 ORTHO05D008316 2.5e-61 239.2 174 63.8
BolC8t48283H Brassica oleracea HOM05D006608 ORTHO05D008316 3.2e-61 238.8 179 60.9
MELO3C026109.2 Cucumis melo HOM05D006608 ORTHO05D008316 3.2e-61 238.8 174 63.2
PSO210G3601 Papaver somniferum HOM05D006608 ORTHO05D008316 3.2e-61 238.8 179 61.5
PSO761G0023 Papaver somniferum HOM05D006608 ORTHO05D008316 3.2e-61 238.8 179 61.5
Solyc01g106090.3 Solanum lycopersicum HOM05D006608 ORTHO05D008316 3.2e-61 238.8 179 62.0
Sopen01g048480 Solanum pennellii HOM05D006608 ORTHO05D008316 3.2e-61 238.8 179 62.0
PGSC0003DMG400010682 Solanum tuberosum HOM05D006608 ORTHO05D008316 3.2e-61 238.8 179 62.0
CANSAT54G1874 Cannabis sativa HOM05D006608 ORTHO05D008316 4.2e-61 238.4 179 62.0
HanXRQChr09g0247441 Helianthus annuus HOM05D006608 ORTHO05D008316 4.2e-61 238.4 179 60.9
MBI18_g27388_MAGBIO Magnolia biondii HOM05D006608 ORTHO05D008316 4.2e-61 238.4 179 61.5
PGR031G0497 Punica granatum HOM05D006608 ORTHO05D008316 4.2e-61 238.4 179 60.9
AL7G40010 Arabidopsis lyrata HOM05D006608 ORTHO05D008316 5.5e-61 238.0 179 61.5
BcaB04g18298 Brassica carinata HOM05D006608 ORTHO05D008316 5.5e-61 238.0 178 61.8
CARHR222300 Cardamine hirsuta HOM05D006608 ORTHO05D008316 5.5e-61 238.0 179 61.5
Gohir.A13G176500 Gossypium hirsutum HOM05D006608 ORTHO05D008316 7.1e-61 237.7 179 61.5
Gorai.013G208300 Gossypium raimondii HOM05D006608 ORTHO05D008316 7.1e-61 237.7 179 61.5
Lj9A306T68 Lonicera japonica HOM05D006608 ORTHO05D008316 9.3e-61 237.3 178 61.2
Prupe.6G309700 Prunus persica HOM05D006608 ORTHO05D008316 9.3e-61 237.3 174 62.6
GSVIVG01031268001 Vitis vinifera HOM05D006608 ORTHO05D008316 9.3e-61 237.3 178 61.8
ClCG01G010870 Citrullus lanatus HOM05D006608 ORTHO05D008316 1.2e-60 236.9 174 62.6
Sabra13G0005500 Salix brachista HOM05D006608 ORTHO05D008316 1.2e-60 236.9 179 60.3
ATR0706G264 Amborella trichopoda HOM05D006608 ORTHO05D008316 1.6e-60 236.5 179 59.2
BcaC07g37888 Brassica carinata HOM05D006608 ORTHO05D008316 1.6e-60 236.5 179 60.3
AT4G15510 Arabidopsis thaliana HOM05D006608 ORTHO05D008316 2.1e-60 236.1 179 60.9
Potri.013G006500 Populus trichocarpa HOM05D006608 ORTHO05D008316 2.1e-60 236.1 179 60.3
SalBow5G2350 Salvia bowleyana HOM05D006608 ORTHO05D008316 2.1e-60 236.1 179 59.8
Eucgr.H01287 Eucalyptus grandis HOM05D006608 ORTHO05D008316 2.7e-60 235.7 179 59.8
Sed0000881 Sechium edule HOM05D006608 ORTHO05D008316 3.5e-60 235.3 174 63.2
CDE01G0267 Ceratophyllum demersum HOM05D006608 ORTHO05D008316 6.0e-60 234.6 179 60.3
Psat3g014240 Pisum sativum HOM05D006608 ORTHO05D008316 1.8e-59 233.0 179 58.7
Migut.B00927 Erythranthe guttata HOM05D006608 ORTHO05D008316 2.3e-59 232.6 179 59.8
TPR.G1650 Trifolium pratense HOM05D006608 ORTHO05D008316 3.9e-59 231.9 179 59.2
EL10Ac4g09502 Beta vulgaris HOM05D006608 ORTHO05D008316 5.1e-59 231.5 179 60.3
Carub.0007s2637 Capsella rubella HOM05D006608 ORTHO05D008316 5.1e-59 231.5 179 59.8
CDE12G0684 Ceratophyllum demersum HOM05D006608 ORTHO05D008316 5.1e-59 231.5 175 61.1
MD04G1191200 Malus domestica HOM05D006608 ORTHO05D008316 5.1e-59 231.5 174 62.1
Aqoxy2G02631 Aquilegia oxysepala HOM05D006608 ORTHO05D008316 6.7e-59 231.1 174 61.5
Medtr7g111880 Medicago truncatula HOM05D006608 ORTHO05D008316 6.7e-59 231.1 179 58.1
MD12G1203800 Malus domestica HOM05D006608 ORTHO05D008316 1.5e-58 229.9 174 61.5
Rhsim11G0098400 Rhododendron simsii HOM05D006608 ORTHO05D008316 2.5e-58 229.2 196 57.7
DCAR_002111 Daucus carota HOM05D006608 ORTHO05D008316 3.3e-58 228.8 174 61.5
RcHm_v2.0_Chr3g0457591 Rosa chinensis HOM05D006608 ORTHO05D008316 3.3e-58 228.8 174 61.5
FAN02G2060 Fragaria x ananassa HOM05D006608 ORTHO05D008316 4.3e-58 228.4 174 60.9
unitig_0.g2226 Utricularia gibba HOM05D006608 ORTHO05D008316 4.3e-58 228.4 179 59.2
BcaNung00268 Brassica carinata HOM05D006608 ORTHO05D008316 5.7e-58 228.0 175 61.1
Lsat_1_v5_gn_7_65241 Lactuca sativa HOM05D006608 ORTHO05D008316 7.4e-58 227.6 175 59.4
FvH4_6g07900 Fragaria vesca HOM05D006608 ORTHO05D008316 9.6e-58 227.3 176 60.2
FAN14G1365 Fragaria x ananassa HOM05D006608 ORTHO05D008316 9.6e-58 227.3 176 60.2
FAN09G0299 Fragaria x ananassa HOM05D002543 ORTHO05D002990 2.8e-57 225.7 173 61.3
SEGI_38534 Sequoiadendron giganteum HOM05D006608 ORTHO05D008316 6.2e-57 224.6 170 62.4
FAN05G5720 Fragaria x ananassa HOM05D006608 ORTHO05D008316 1.4e-56 223.4 174 60.3
BcaC09g50241 Brassica carinata HOM05D006608 ORTHO05D008316 2.6e-55 219.2 166 60.2
Gohir.D13G182950 Gossypium hirsutum HOM05D006608 ORTHO05D008316 5.0e-54 214.9 179 57.5
CBR_g54968 Chara braunii HOM05D006608 ORTHO05D008316 9.3e-53 210.7 176 58.0
Nn4g25453 Nelumbo nucifera HOM05D006608 ORTHO05D008316 3.0e-51 205.7 179 55.9
Oeu019844.1 Olea europaea HOM05D006608 ORTHO05D008316 6.3e-49 198.0 179 55.9
Cre08.g362900 Chlamydomonas reinhardtii HOM05D006608 ORTHO05D008316 4.7e-36 155.2 182 43.4
AUR62000427 Chenopodium quinoa HOM05D006608 ORTHO05D008316 1.0e-35 154.1 111 64.9
MCO08G333 Micromonas commoda HOM05D006608 ORTHO05D008316 1.8e-35 153.3 185 45.4
Os12g0564400 Oryza sativa ssp. japonica HOM05D006608 ORTHO05D008316 8.2e-33 144.4 118 58.5
Sc09g0002570 Simmondsia chinensis HOM05D006608 ORTHO05D008316 9.1e-32 141.0 111 61.3
PRCOL_00003409 Prasinoderma coloniale HOM05D006608 ORTHO05D008316 8.0e-20 101.3 171 34.5
Os07g0275901 Oryza sativa ssp. japonica HOM05D006608 ORTHO05D008316 1.6e-12 77.0 75 56.0
Os07g0275801 Oryza sativa ssp. japonica HOM05D006608 ORTHO05D008316 8.0e-12 74.7 54 64.8
Glyma.19G227402 Glycine max HOM05D006608 ORTHO05D008316 1.7e-09 67.0 46 63.0
THA.LOC104824268 Tarenaya hassleriana HOM05D002933 ORTHO05D007742 1.1e-08 64.3 172 29.7
CDE04G2678 Ceratophyllum demersum HOM05D002933 ORTHO05D007742 1.4e-08 63.9 178 29.2
CDE07G0630 Ceratophyllum demersum HOM05D002933 ORTHO05D007742 1.4e-08 63.9 178 29.2
Actinidia35046 Actinidia chinensis HOM05D002933 ORTHO05D007742 1.8e-08 63.5 180 29.4
Aqoxy4G03028 Aquilegia oxysepala HOM05D002933 ORTHO05D007742 1.8e-08 63.5 175 29.1
ClCG09G020230 Citrullus lanatus HOM05D002933 ORTHO05D007742 1.8e-08 63.5 179 28.5
Actinidia18978 Actinidia chinensis HOM05D002933 ORTHO05D007742 3.1e-08 62.8 180 29.4
TAR623G1509 Trochodendron aralioides HOM05D002933 ORTHO05D007742 7.0e-08 61.6 176 28.4
TAR623G1657 Trochodendron aralioides HOM05D002933 ORTHO05D007742 7.0e-08 61.6 176 28.4
Ciclev10032564m.g Citrus clementina HOM05D002933 ORTHO05D007742 9.1e-08 61.2 175 28.0
Phvul.008G015100 Phaseolus vulgaris HOM05D002933 ORTHO05D007742 1.2e-07 60.8 171 28.7
Cpa.g.sc1.346 Carica papaya HOM05D002933 ORTHO05D007742 1.6e-07 60.5 174 28.7
GSVIVG01016618001 Vitis vinifera HOM05D002933 ORTHO05D007742 1.6e-07 60.5 180 28.9
Prupe.2G229000 Prunus persica HOM05D002933 ORTHO05D007742 2.0e-07 60.1 177 29.4
Aa31LG10G10340 Aethionema arabicum HOM05D002933 ORTHO05D007742 2.7e-07 59.7 178 28.1
Eucgr.G02904 Eucalyptus grandis HOM05D002933 ORTHO05D007742 2.7e-07 59.7 172 29.1
Dinv22762 Davidia involucrata HOM05D002933 ORTHO05D007742 3.5e-07 59.3 176 28.4
QL08p058666 Quercus lobata HOM05D002933 ORTHO05D007742 3.5e-07 59.3 174 28.7
Nitab4.5_0001723g0030 Nicotiana tabacum HOM05D002933 ORTHO05D007742 4.5e-07 58.9 175 28.0
Sed0016692 Sechium edule HOM05D002933 ORTHO05D007742 4.5e-07 58.9 175 29.1
Lj1g0025916 Lotus japonicus HOM05D002933 ORTHO05D007742 5.9e-07 58.5 174 26.4
SGA_v2.0_scaffold28G11736 Striga asiatica HOM05D002933 ORTHO05D007742 5.9e-07 58.5 187 26.7
Nitab4.5_0001797g0060 Nicotiana tabacum HOM05D002933 ORTHO05D007742 7.7e-07 58.2 175 28.0
BcaC02g09745 Brassica carinata HOM05D002933 ORTHO05D007742 1.0e-06 57.8 177 26.6
BolC4t25275H Brassica oleracea HOM05D002933 ORTHO05D007742 1.0e-06 57.8 177 26.6
Duzib114G0859 Durio zibethinus HOM05D002933 ORTHO05D007742 1.0e-06 57.8 174 27.0
Thecc.10G052500 Theobroma cacao HOM05D002933 ORTHO05D007742 1.0e-06 57.8 180 27.8
AL5G36450 Arabidopsis lyrata HOM05D002933 ORTHO05D007742 1.3e-06 57.4 177 27.7
A04p04610 Brassica napus HOM05D002933 ORTHO05D007742 1.3e-06 57.4 177 26.6
BraA04t16171Z Brassica rapa HOM05D002933 ORTHO05D007742 1.3e-06 57.4 177 26.6
Thhalv10010685m.g Eutrema salsugineum HOM05D002933 ORTHO05D007742 1.3e-06 57.4 177 27.7
Manes.10G038112 Manihot esculenta HOM05D002933 ORTHO05D007742 1.3e-06 57.4 179 27.4
Potri.010G210200 Populus trichocarpa HOM05D002933 ORTHO05D007742 1.3e-06 57.4 180 27.2
TWI15G0569 Tripterygium wilfordii HOM05D002933 ORTHO05D007742 1.3e-06 57.4 177 27.1
MSTRG.22954 Avicennia marina HOM05D002933 ORTHO05D007742 1.7e-06 57.0 175 27.4
Carub.0005s2198 Capsella rubella HOM05D002933 ORTHO05D007742 1.7e-06 57.0 177 27.7
COL.COLO4_14919 Corchorus olitorius HOM05D002933 ORTHO05D007742 1.7e-06 57.0 174 27.6
BcaB02g08429 Brassica carinata HOM05D002933 ORTHO05D007742 2.3e-06 56.6 177 26.0
Peaxi162Scf01223g00010 Petunia axillaris HOM05D002933 ORTHO05D007742 2.3e-06 56.6 175 28.0
Hund02566 Selenicereus undatus HOM05D002933 ORTHO05D007742 2.9e-06 56.2 172 29.1
Sc12g0007090 Simmondsia chinensis HOM05D002933 ORTHO05D007742 2.9e-06 56.2 175 28.0
arahy.Tifrunner.gnm1.ann1.55TXVJ Arachis hypogaea HOM05D002933 ORTHO05D007742 3.8e-06 55.8 174 26.4
arahy.Tifrunner.gnm1.ann1.XEQF22 Arachis hypogaea HOM05D002933 ORTHO05D007742 3.8e-06 55.8 174 26.4
AT3G55330 Arabidopsis thaliana HOM05D002933 ORTHO05D007742 5.0e-06 55.5 177 27.1
CARHR165310 Cardamine hirsuta HOM05D002933 ORTHO05D007742 5.0e-06 55.5 177 27.1
CAN.G1228.6 Capsicum annuum HOM05D002933 ORTHO05D007742 6.6e-06 55.1 172 29.1
CBR_g72637 Chara braunii HOM05D002933 ORTHO05D007742 6.6e-06 55.1 174 25.9
SEGI_36156 Sequoiadendron giganteum HOM05D002933 ORTHO05D007742 6.6e-06 55.1 175 27.4
HPP92_017019 Vanilla planifolia HOM05D002543 ORTHO05D002990 8.6e-06 54.7 45 55.6


User provided reference genes

Program Settings