Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO201G0168 Selaginella moellendorffii HOM05D005949 ORTHO05D006945 9.6e-233 810.1 496 100.0
Pp3c14_7210 Physcomitrium patens HOM05D005949 ORTHO05D006945 1.2e-68 265.0 419 53.0
SEGI_30195 Sequoiadendron giganteum HOM05D005949 ORTHO05D006945 5.7e-68 262.7 418 48.8
Pp3c1_21850 Physcomitrium patens HOM05D005949 ORTHO05D006945 9.8e-68 261.9 445 51.0
Manes.17G110300 Manihot esculenta HOM05D005949 ORTHO05D006945 2.8e-67 260.4 419 36.0
Nitab4.5_0001562g0070 Nicotiana tabacum HOM05D005949 ORTHO05D006945 1.1e-66 258.5 415 35.9
PGR083G1217 Punica granatum HOM05D005949 ORTHO05D006945 1.4e-66 258.1 393 45.0
CiPaw.03G046600 Carya illinoinensis HOM05D005949 ORTHO05D006945 3.1e-66 256.9 409 51.3
CBR_g20410 Chara braunii HOM05D005949 ORTHO05D006945 5.4e-66 256.1 416 52.4
Nitab4.5_0006683g0100 Nicotiana tabacum HOM05D005949 ORTHO05D006945 1.6e-65 254.6 407 35.6
GSVIVG01032367001 Vitis vinifera HOM05D005949 ORTHO05D006945 3.5e-65 253.4 412 42.5
CAN.G1235.24 Capsicum annuum HOM05D005949 ORTHO05D006945 7.8e-65 252.3 418 35.9
Nn2g12389 Nelumbo nucifera HOM05D005949 ORTHO05D006945 1.0e-64 251.9 401 42.4
Sed0011104 Sechium edule HOM05D005949 ORTHO05D006945 1.0e-64 251.9 393 48.6
QL02p073821 Quercus lobata HOM05D005949 ORTHO05D006945 1.7e-64 251.1 409 44.3
CBR_g20407 Chara braunii HOM05D005949 ORTHO05D006945 2.3e-64 250.8 414 51.9
COL.COLO4_29188 Corchorus olitorius HOM05D005949 ORTHO05D006945 2.9e-64 250.4 405 39.3
Thecc.04G021200 Theobroma cacao HOM05D005949 ORTHO05D006945 2.9e-64 250.4 405 44.2
Sopen01g054070 Solanum pennellii HOM05D005949 ORTHO05D006945 5.0e-64 249.6 405 33.8
CANSAT64G2213 Cannabis sativa HOM05D005949 ORTHO05D006945 6.6e-64 249.2 415 42.7
ClCG10G013730 Citrullus lanatus HOM05D005949 ORTHO05D006945 6.6e-64 249.2 393 46.3
MSTRG.15541 Avicennia marina HOM05D005949 ORTHO05D006945 2.5e-63 247.3 397 34.8
PGSC0003DMG400018653 Solanum tuberosum HOM05D005949 ORTHO05D006945 2.5e-63 247.3 413 33.7
Solyc01g112020.3 Solanum lycopersicum HOM05D005949 ORTHO05D006945 9.5e-63 245.4 405 33.3
Eucgr.J02262 Eucalyptus grandis HOM05D005949 ORTHO05D006945 2.1e-62 244.2 386 44.3
VMungo0464G1442 Vigna mungo HOM05D005949 ORTHO05D006945 2.1e-62 244.2 396 45.2
Potri.001G341400 Populus trichocarpa HOM05D005949 ORTHO05D006945 3.6e-62 243.4 421 49.6
TAR374G0398 Trochodendron aralioides HOM05D005949 ORTHO05D006945 4.7e-62 243.0 406 34.0
ATR0199G040 Amborella trichopoda HOM05D005949 ORTHO05D006945 6.1e-62 242.7 424 44.1
Gohir.A10G101600 Gossypium hirsutum HOM05D005949 ORTHO05D006945 6.1e-62 242.7 400 44.0
Gorai.011G094000 Gossypium raimondii HOM05D005949 ORTHO05D006945 6.1e-62 242.7 400 43.0
Cc09_g05780 Coffea canephora HOM05D005949 ORTHO05D006945 1.0e-61 241.9 407 52.3
Gohir.D10G085800 Gossypium hirsutum HOM05D005949 ORTHO05D006945 1.0e-61 241.9 400 43.0
Prupe.3G295200 Prunus persica HOM05D005949 ORTHO05D006945 1.4e-61 241.5 409 50.1
Mapoly0062s0069 Marchantia polymorpha HOM05D005949 ORTHO05D006945 2.3e-61 240.7 441 42.9
Phvul.004G060400 Phaseolus vulgaris HOM05D005949 ORTHO05D006945 3.0e-61 240.4 405 40.2
RhsimUnG0087200 Rhododendron simsii HOM05D005949 ORTHO05D006945 4.0e-61 240.0 466 32.8
RhsimUnG0006400 Rhododendron simsii HOM05D005949 ORTHO05D006945 5.2e-61 239.6 466 32.8
Duzib264G1167 Durio zibethinus HOM05D005949 ORTHO05D006945 8.9e-61 238.8 405 33.3
Glyma.05G115200 Glycine max HOM05D005949 ORTHO05D006945 8.9e-61 238.8 393 42.5
Sabra16G0221400 Salix brachista HOM05D005949 ORTHO05D006945 8.9e-61 238.8 412 49.8
MD17G1021300 Malus domestica HOM05D005949 ORTHO05D006945 1.5e-60 238.0 396 48.2
RcHm_v2.0_Chr2g0173461 Rosa chinensis HOM05D005949 ORTHO05D006945 3.4e-60 236.9 401 48.1
arahy.Tifrunner.gnm1.ann1.4A4JE9 Arachis hypogaea HOM05D005949 ORTHO05D006945 7.5e-60 235.7 392 48.5
MD09G1021300 Malus domestica HOM05D005949 ORTHO05D006945 9.8e-60 235.3 411 46.7
Cfa007328 Carpinus fangiana HOM05D005949 ORTHO05D006945 2.2e-59 234.2 394 41.1
Haze_14768 Corylus avellana HOM05D005949 ORTHO05D006945 3.7e-59 233.4 430 38.8
Carub.0007s0438 Capsella rubella HOM05D005949 ORTHO05D006945 6.4e-59 232.6 402 45.0
Ciclev10015245m.g Citrus clementina HOM05D005949 ORTHO05D006945 1.1e-58 231.9 417 33.6
Lalb_Chr06g0174481 Lupinus albus HOM05D005949 ORTHO05D006945 1.4e-58 231.5 426 41.8
CSS0029670 Camellia sinensis var. sinensis HOM05D005949 ORTHO05D006945 2.4e-58 230.7 404 33.4
Glyma.19G052100 Glycine max HOM05D005949 ORTHO05D006945 2.4e-58 230.7 401 42.4
HanXRQChr15g0486811 Helianthus annuus HOM05D005949 ORTHO05D006945 3.2e-58 230.3 432 31.9
Lsat_1_v5_gn_4_184520 Lactuca sativa HOM05D005949 ORTHO05D006945 5.4e-58 229.6 398 33.9
Ca_04380_v3 Cicer arietinum L. HOM05D005949 ORTHO05D006945 1.2e-57 228.4 397 42.1
FvH4_6g51990 Fragaria vesca HOM05D005949 ORTHO05D006945 1.2e-57 228.4 414 47.1
AT4G35850 Arabidopsis thaliana HOM05D005949 ORTHO05D006945 2.0e-57 227.6 396 44.4
Thhalv10025194m.g Eutrema salsugineum HOM05D005949 ORTHO05D006945 2.0e-57 227.6 402 44.0
TWI12G1469 Tripterygium wilfordii HOM05D005949 ORTHO05D006945 2.0e-57 227.6 411 43.1
Aa31LG6G12800 Aethionema arabicum HOM05D005949 ORTHO05D006945 2.7e-57 227.3 402 46.3
Migut.K01417 Erythranthe guttata HOM05D005949 ORTHO05D006945 2.7e-57 227.3 414 44.7
THA.LOC104819734 Tarenaya hassleriana HOM05D005949 ORTHO05D006945 2.7e-57 227.3 409 45.5
ECA232G4961 Erigeron canadensis HOM05D005949 ORTHO05D006945 3.5e-57 226.9 427 32.3
CARHR244220 Cardamine hirsuta HOM05D005949 ORTHO05D006945 4.6e-57 226.5 396 46.0
SGA_v2.0_scaffold47G17523 Striga asiatica HOM05D005949 ORTHO05D006945 4.6e-57 226.5 399 33.1
Aqoxy5G03678 Aquilegia oxysepala HOM05D005949 ORTHO05D006945 6.0e-57 226.1 422 32.0
Lj2g0004695 Lotus japonicus HOM05D005949 ORTHO05D006945 6.0e-57 226.1 393 47.8
FAN05G2654 Fragaria x ananassa HOM05D005949 ORTHO05D006945 1.3e-56 224.9 393 47.3
AL7G15220 Arabidopsis lyrata HOM05D005949 ORTHO05D006945 2.3e-56 224.2 396 43.9
Ah.02g128260 Amaranthus hybridus HOM05D005949 ORTHO05D006945 3.9e-56 223.4 426 31.9
CsaV3_3G042930 Cucumis sativus L. HOM05D000631 ORTHO05D000524 5.0e-56 223.0 373 48.8
FAN14G1023 Fragaria x ananassa HOM05D005949 ORTHO05D006945 5.0e-56 223.0 393 48.3
C01p03190 Brassica napus HOM05D005949 ORTHO05D006945 8.6e-56 222.2 402 42.3
BcaNung04881 Brassica carinata HOM05D005949 ORTHO05D006945 1.1e-55 221.9 416 43.3
PSO063G1157 Papaver somniferum HOM05D005949 ORTHO05D006945 1.5e-55 221.5 396 31.3
A01p02870 Brassica napus HOM05D005949 ORTHO05D006945 1.9e-55 221.1 402 41.5
BraA01t00268Z Brassica rapa HOM05D005949 ORTHO05D006945 1.9e-55 221.1 402 41.8
Lj7C602T3 Lonicera japonica HOM05D005949 ORTHO05D006945 1.9e-55 221.1 425 32.7
PSO754G0010 Papaver somniferum HOM05D005949 ORTHO05D006945 3.3e-55 220.3 396 31.6
BolC1t00304H Brassica oleracea HOM05D005949 ORTHO05D006945 5.6e-55 219.5 402 41.5
FAN02G3213 Fragaria x ananassa HOM05D005949 ORTHO05D006945 9.5e-55 218.8 393 47.1
arahy.Tifrunner.gnm1.ann1.BK7H4N Arachis hypogaea HOM05D005949 ORTHO05D006945 1.2e-54 218.4 412 46.4
Os05g0145600 Oryza sativa ssp. japonica HOM05D005949 ORTHO05D006945 2.1e-54 217.6 433 47.3
TPR.G8694 Trifolium pratense HOM05D005949 ORTHO05D006945 3.6e-54 216.9 393 41.2
Peaxi162Scf00420g00016 Petunia axillaris HOM05D005949 ORTHO05D006945 4.7e-54 216.5 416 33.9
TPR.G16864 Trifolium pratense HOM05D005949 ORTHO05D006945 8.0e-54 215.7 393 40.5
FAN09G2334 Fragaria x ananassa HOM05D005949 ORTHO05D006945 3.1e-53 213.8 401 30.7
HPP92_016937 Vanilla planifolia HOM05D005949 ORTHO05D006945 5.2e-53 213.0 420 32.9
Zm00001eb354320 Zea mays HOM05D005949 ORTHO05D006945 1.5e-52 211.5 404 49.8
MELO3C026595.2 Cucumis melo HOM05D005949 ORTHO05D006945 5.8e-52 209.5 363 46.6
Medtr6g021740 Medicago truncatula HOM05D005949 ORTHO05D006945 5.8e-52 209.5 420 36.7
EL10Ac6g14123 Beta vulgaris HOM05D005949 ORTHO05D006945 4.9e-51 206.5 454 28.0
BcaNung00787 Brassica carinata HOM05D005949 ORTHO05D006945 1.1e-50 205.3 402 29.6
AagrBONN_evm.TU.Sc2ySwM_117.2156 Anthoceros agrestis HOM05D005949 ORTHO05D006945 1.4e-50 204.9 411 45.0
AUR62028447 Chenopodium quinoa HOM05D005949 ORTHO05D006945 3.2e-50 203.8 250 40.4
Thhalv10023015m.g Eutrema salsugineum HOM05D005949 ORTHO05D006945 1.7e-48 198.0 405 41.7
Atru.chr6.2442 Acer truncatum HOM05D005949 ORTHO05D006945 2.1e-46 191.0 251 38.2
AUR62043287 Chenopodium quinoa HOM05D005949 ORTHO05D006945 6.2e-46 189.5 395 29.9
Psat5g064960 Pisum sativum HOM05D005949 ORTHO05D006945 1.3e-43 181.8 250 37.6
unitig_88.g27782 Utricularia gibba HOM05D005949 ORTHO05D006945 1.3e-43 181.8 255 38.4
SHI03792 Sapria himalayana HOM05D005949 ORTHO05D006945 2.4e-42 177.6 239 36.4
DCAR_021740 Daucus carota HOM05D005949 ORTHO05D006945 2.1e-41 174.5 422 29.4
Sc09g0007150 Simmondsia chinensis HOM05D005949 ORTHO05D006945 1.9e-39 167.9 350 34.0
Dinv25719 Davidia involucrata HOM05D005949 ORTHO05D006945 3.8e-35 153.7 317 36.9
CSS0002019 Camellia sinensis var. sinensis HOM05D005949 ORTHO05D006945 5.6e-31 139.8 251 35.5
Actinidia36133 Actinidia chinensis HOM05D005949 ORTHO05D006945 7.3e-31 139.4 285 51.6
CDE04G3569 Ceratophyllum demersum HOM05D005949 ORTHO05D006945 2.4e-29 134.4 289 44.3
Duzib147G0933 Durio zibethinus HOM05D005949 ORTHO05D006945 4.6e-25 120.2 332 25.0
vmacro05885 Vaccinium macrocarpon HOM05D005949 ORTHO05D006945 1.3e-24 118.6 310 28.7
Cpa.g.sc130.71 Carica papaya HOM05D005949 ORTHO05D006945 7.3e-23 112.8 255 43.9
AL7G15200 Arabidopsis lyrata HOM05D005949 ORTHO05D006945 7.6e-20 102.8 123 37.4
CSS0020931 Camellia sinensis var. sinensis HOM05D005949 ORTHO05D006945 4.2e-18 97.1 155 35.5
Actinidia36134 Actinidia chinensis HOM05D005949 ORTHO05D006945 1.8e-16 91.7 101 40.6
Psat1g081680 Pisum sativum HOM05D005949 ORTHO05D006945 8.7e-16 89.4 90 43.3
MD09G1021100 Malus domestica HOM05D005949 ORTHO05D006945 1.5e-15 88.6 114 34.2
Hma1.2p1_0818F.1_g223360 Hydrangea macrophylla HOM05D005949 ORTHO05D006945 3.1e-13 80.9 94 40.4
CAN.G1258.5 Capsicum annuum HOM05D005949 ORTHO05D006945 9.0e-13 79.3 75 50.7
Psat1g081720 Pisum sativum HOM05D005949 ORTHO05D006945 2.6e-12 77.8 65 53.8
CAN.G479.6 Capsicum annuum HOM05D005949 ORTHO05D006945 3.4e-12 77.4 75 50.7
MBI10_g37260_MAGBIO Magnolia biondii HOM05D005949 ORTHO05D006945 4.5e-12 77.0 211 49.8
SHI03793 Sapria himalayana HOM05D005949 ORTHO05D006945 4.5e-12 77.0 65 52.3
Actinidia05972 Actinidia chinensis HOM05D005088 ORTHO05D006914 4.6e-09 67.0 193 25.4
Sc07g0004380 Simmondsia chinensis HOM05D005949 ORTHO05D006945 6.0e-09 66.6 113 34.5
MBI10_g15883_MAGBIO Magnolia biondii HOM05D005949 ORTHO05D006945 1.0e-08 65.9 98 39.8
CDE04G3731 Ceratophyllum demersum HOM05D005949 ORTHO05D006945 1.3e-08 65.5 67 46.3
CAN.G370.99 Capsicum annuum HOM05D000140 ORTHO05D000087 5.1e-08 63.5 103 38.8
CAN.G153.13 Capsicum annuum HOM05D001265 ORTHO05D006945 1.5e-07 62.0 45 62.2
Zm00001eb120940 Zea mays HOM05D005949 ORTHO05D006945 4.8e-06 57.0 137 32.8


User provided reference genes

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