Gene: Lsat_1_v5_gn_4_184520

General Information

Structural Information

  • Species Lactuca sativa
  • Gene Identifier Lsat_1_v5_gn_4_184520
  • Transcript Identifier Lsat_1_v5_gn_4_184520.1
  • Gene Type Coding gene
  • Location Lsat_1_v8_lg_4 : 373592265-373608489 : positive

Gene Family Information

  • ID HOM05D005949
  • #Genes/#Species 132/93
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • id Lsat_1_v5_gn_4_184520.v5
  • pacid 38928215

Descriptions

  • Description PF07002//PF13041 - Copine (Copine) // PPR repeat family (PPR_2)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IEA
InterProprotein binding
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT4G35850

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005739
ISO
PLAZA Integrative Orthologymitochondrion AT4G35850

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR002885 Pentatricopeptide repeat
IPR010734 Copine, C-terminal
IPR011990 Tetratricopeptide-like helical domain superfamily
IPR002035 von Willebrand factor, type A
Mapman id Description
19.2.2.1.4.3.2 Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.ubiquitin conjugation (ubiquitylation).ubiquitin-ligase E3 activities.RING-domain E3 ligase activities.RING-HC-class E3 ligase
19.2.2.1.5.2 Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.ubiquitin conjugation (ubiquitylation).polyubiquitination.ligating E3 protein (RGLG)