Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO200G0193 Selaginella moellendorffii HOM05D005474 ORTHO05D006551 9.8e-236 819.7 401 100.0
Mapoly0095s0049 Marchantia polymorpha HOM05D005474 ORTHO05D006551 2.8e-113 412.9 436 50.5
Pp3c18_8230 Physcomitrium patens HOM05D005474 ORTHO05D006551 1.6e-108 397.1 410 51.0
Lalb_Chr16g0376951 Lupinus albus HOM05D005474 ORTHO05D006551 5.1e-107 392.1 407 47.2
Pp3c7_4800 Physcomitrium patens HOM05D005474 ORTHO05D006551 1.1e-106 391.0 433 47.3
Medtr5g009240 Medicago truncatula HOM05D005474 ORTHO05D006551 1.6e-105 387.1 410 47.3
Lalb_Chr05g0211531 Lupinus albus HOM05D005474 ORTHO05D006551 2.1e-105 386.7 414 46.6
PGR042G2806 Punica granatum HOM05D005474 ORTHO05D006551 8.1e-105 384.8 415 46.0
CsaV3_5G001990 Cucumis sativus L. HOM05D005474 ORTHO05D006551 1.4e-104 384.0 421 46.3
MELO3C005754.2 Cucumis melo HOM05D005474 ORTHO05D006551 2.4e-104 383.3 421 46.1
Sed0014344 Sechium edule HOM05D005474 ORTHO05D006551 6.9e-104 381.7 409 45.7
MD14G1128900 Malus domestica HOM05D005474 ORTHO05D006551 8.9e-104 381.3 412 47.3
TPR.G25600 Trifolium pratense HOM05D005474 ORTHO05D006551 8.9e-104 381.3 415 46.5
Potri.003G140000 Populus trichocarpa HOM05D005474 ORTHO05D006551 1.2e-103 380.9 410 46.8
FvH4_5g04600 Fragaria vesca HOM05D005474 ORTHO05D006551 1.5e-103 380.6 413 47.2
FAN04G1263 Fragaria x ananassa HOM05D005474 ORTHO05D006551 1.5e-103 380.6 417 46.5
RcHm_v2.0_Chr7g0194791 Rosa chinensis HOM05D005474 ORTHO05D006551 1.5e-103 380.6 405 46.7
FAN18G3330 Fragaria x ananassa HOM05D005474 ORTHO05D006551 2.0e-103 380.2 411 47.0
ClCG01G001840 Citrullus lanatus HOM05D005474 ORTHO05D006551 2.6e-103 379.8 416 45.4
Rhsim02G0243400 Rhododendron simsii HOM05D005474 ORTHO05D006551 2.6e-103 379.8 416 46.9
Eucgr.D01738 Eucalyptus grandis HOM05D005474 ORTHO05D006551 3.4e-103 379.4 409 46.0
FAN08G2748 Fragaria x ananassa HOM05D005474 ORTHO05D006551 3.4e-103 379.4 412 46.8
Psat2g185600 Pisum sativum HOM05D005474 ORTHO05D006551 3.4e-103 379.4 414 45.7
Migut.E01253 Erythranthe guttata HOM05D005474 ORTHO05D006551 4.4e-103 379.0 398 48.2
FAN18G1504 Fragaria x ananassa HOM05D005474 ORTHO05D006551 4.4e-103 379.0 416 46.6
HPP92_026770 Vanilla planifolia HOM05D005474 ORTHO05D006551 7.6e-103 378.3 416 46.4
COL.COLO4_10702 Corchorus olitorius HOM05D005474 ORTHO05D006551 1.7e-102 377.1 419 45.6
SGA_v2.0_scaffold144G35858 Striga asiatica HOM05D005474 ORTHO05D006551 2.2e-102 376.7 404 47.8
HanXRQChr03g0083521 Helianthus annuus HOM05D005474 ORTHO05D006551 2.9e-102 376.3 381 49.3
Aqoxy7G00102 Aquilegia oxysepala HOM05D005474 ORTHO05D006551 3.8e-102 375.9 419 46.5
CSS0001924 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 3.8e-102 375.9 437 46.0
FAN13G0565 Fragaria x ananassa HOM05D005474 ORTHO05D006551 3.8e-102 375.9 414 46.1
Actinidia22160 Actinidia chinensis HOM05D005474 ORTHO05D006551 4.9e-102 375.6 429 45.2
Prupe.5G120100 Prunus persica HOM05D005474 ORTHO05D006551 6.4e-102 375.2 408 47.1
Sed0020716 Sechium edule HOM05D005474 ORTHO05D006551 6.4e-102 375.2 417 44.1
Ca_24501_v3 Cicer arietinum L. HOM05D005474 ORTHO05D006551 1.1e-101 374.4 415 46.0
Ca_29734_v3 Cicer arietinum L. HOM05D005474 ORTHO05D006551 1.1e-101 374.4 415 46.0
LjContig00312_ERROPOS870357g0016174 Lotus japonicus HOM05D005474 ORTHO05D006551 1.1e-101 374.4 418 46.7
Thecc.03G298100 Theobroma cacao HOM05D005474 ORTHO05D006551 1.1e-101 374.4 412 46.8
Atru.chr9.1979 Acer truncatum HOM05D005474 ORTHO05D006551 1.4e-101 374.0 413 45.8
Atru.chr9.1994 Acer truncatum HOM05D005474 ORTHO05D006551 2.4e-101 373.2 413 45.8
Hund14220 Selenicereus undatus HOM05D005474 ORTHO05D006551 2.4e-101 373.2 421 45.4
CANSAT21G1635 Cannabis sativa HOM05D005474 ORTHO05D006551 3.2e-101 372.9 417 47.2
Ciclev10020308m.g Citrus clementina HOM05D005474 ORTHO05D006551 3.2e-101 372.9 413 44.3
Lsat_1_v5_gn_6_83981 Lactuca sativa HOM05D005474 ORTHO05D006551 3.2e-101 372.9 405 46.7
Phvul.002G164600 Phaseolus vulgaris HOM05D005474 ORTHO05D006551 3.2e-101 372.9 416 46.4
VMungo1215G0769 Vigna mungo HOM05D005474 ORTHO05D006551 3.2e-101 372.9 418 45.2
Lj2C167G11 Lonicera japonica HOM05D005474 ORTHO05D006551 4.2e-101 372.5 420 46.7
Sabra01G0068000 Salix brachista HOM05D005474 ORTHO05D006551 4.2e-101 372.5 426 45.1
Potri.001G091600 Populus trichocarpa HOM05D005474 ORTHO05D006551 5.4e-101 372.1 420 45.0
GSVIVG01019532001 Vitis vinifera HOM05D005474 ORTHO05D006551 5.4e-101 372.1 425 45.4
Zm00001eb277940 Zea mays HOM05D005474 ORTHO05D006551 5.4e-101 372.1 408 47.1
Oeu063522.1 Olea europaea HOM05D005474 ORTHO05D006551 7.1e-101 371.7 402 48.3
QL02p030435 Quercus lobata HOM05D005474 ORTHO05D006551 9.3e-101 371.3 417 45.8
Sp7g21810 Schrenkiella parvula HOM05D005474 ORTHO05D006551 9.3e-101 371.3 405 47.2
Glyma.01G225700 Glycine max HOM05D005474 ORTHO05D006551 1.6e-100 370.5 414 46.6
SalBow8G3265 Salvia bowleyana HOM05D005474 ORTHO05D006551 2.1e-100 370.2 394 47.5
THA.LOC104806435 Tarenaya hassleriana HOM05D005474 ORTHO05D006551 2.1e-100 370.2 409 47.2
unitig_0.g387 Utricularia gibba HOM05D005474 ORTHO05D006551 2.1e-100 370.2 397 48.6
AUR62010840 Chenopodium quinoa HOM05D005474 ORTHO05D006551 2.7e-100 369.8 412 45.4
MD06G1107100 Malus domestica HOM05D005474 ORTHO05D006551 2.7e-100 369.8 411 46.2
SalBow1G1678 Salvia bowleyana HOM05D005474 ORTHO05D006551 3.5e-100 369.4 401 46.6
Carub.0007s1727 Capsella rubella HOM05D005474 ORTHO05D006551 4.6e-100 369.0 421 46.8
Cpa.g.sc128.67 Carica papaya HOM05D005474 ORTHO05D006551 4.6e-100 369.0 426 45.1
TWI56G1439 Tripterygium wilfordii HOM05D005474 ORTHO05D006551 4.6e-100 369.0 417 44.8
CARHR231240 Cardamine hirsuta HOM05D005474 ORTHO05D006551 6.0e-100 368.6 411 47.7
Cc08_g16070 Coffea canephora HOM05D005474 ORTHO05D006551 6.0e-100 368.6 413 45.0
SalBow1G8106 Salvia bowleyana HOM05D005474 ORTHO05D006551 7.8e-100 368.2 401 46.6
AUR62019839 Chenopodium quinoa HOM05D005474 ORTHO05D006551 1.0e-99 367.9 414 45.4
Nitab4.5_0002782g0080 Nicotiana tabacum HOM05D005474 ORTHO05D006551 1.3e-99 367.5 413 47.0
Os06g0529800 Oryza sativa ssp. japonica HOM05D005474 ORTHO05D006551 1.3e-99 367.5 406 46.3
Thhalv10025382m.g Eutrema salsugineum HOM05D005474 ORTHO05D006551 1.7e-99 367.1 404 46.5
TAR629G2557 Trochodendron aralioides HOM05D005474 ORTHO05D006551 2.3e-99 366.7 420 45.2
Aa31LG6G7070 Aethionema arabicum HOM05D005474 ORTHO05D006551 6.6e-99 365.2 405 45.4
Dinv38831 Davidia involucrata HOM05D005474 ORTHO05D006551 6.6e-99 365.2 425 44.2
Gohir.A12G236400 Gossypium hirsutum HOM05D005474 ORTHO05D006551 6.6e-99 365.2 424 43.9
TAR374G0037 Trochodendron aralioides HOM05D005474 ORTHO05D006551 6.6e-99 365.2 422 45.3
BcaNung01092 Brassica carinata HOM05D005474 ORTHO05D006551 8.7e-99 364.8 404 48.5
A01p15160 Brassica napus HOM05D005474 ORTHO05D006551 8.7e-99 364.8 408 46.3
CAN.G532.121 Capsicum annuum HOM05D005474 ORTHO05D006551 8.7e-99 364.8 413 46.2
ECA240G1977 Erigeron canadensis HOM05D005474 ORTHO05D006551 1.1e-98 364.4 401 46.9
Manes.01G049100 Manihot esculenta HOM05D005474 ORTHO05D006551 1.5e-98 364.0 424 45.5
Sc22g0005000 Simmondsia chinensis HOM05D005474 ORTHO05D006551 1.5e-98 364.0 398 45.2
PGSC0003DMG400012286 Solanum tuberosum HOM05D005474 ORTHO05D006551 1.5e-98 364.0 422 46.9
MSTRG.13885 Avicennia marina HOM05D005474 ORTHO05D006551 1.9e-98 363.6 446 43.3
Haze_09055 Corylus avellana HOM05D005474 ORTHO05D006551 2.5e-98 363.2 416 45.2
Gohir.D12G237600 Gossypium hirsutum HOM05D005474 ORTHO05D006551 2.5e-98 363.2 424 43.4
BolC1t01832H Brassica oleracea HOM05D005474 ORTHO05D006551 4.3e-98 362.5 406 46.6
Gorai.008G254400 Gossypium raimondii HOM05D005474 ORTHO05D006551 4.3e-98 362.5 420 43.6
BcaC09g50941 Brassica carinata HOM05D005474 ORTHO05D006551 5.6e-98 362.1 408 46.3
C01p19060 Brassica napus HOM05D005474 ORTHO05D006551 5.6e-98 362.1 408 46.3
TWI12G0204 Tripterygium wilfordii HOM05D005474 ORTHO05D006551 5.6e-98 362.1 420 43.8
Cfa012014 Carpinus fangiana HOM05D005474 ORTHO05D006551 7.3e-98 361.7 414 45.4
PSO170G1345 Papaver somniferum HOM05D005474 ORTHO05D006551 7.3e-98 361.7 432 44.0
Duzib084G1138 Durio zibethinus HOM05D005474 ORTHO05D006551 1.3e-97 360.9 416 44.0
Sopen08g030580 Solanum pennellii HOM05D005474 ORTHO05D006551 6.2e-97 358.6 410 46.3
Solyc08g082320.3 Solanum lycopersicum HOM05D005474 ORTHO05D006551 1.1e-96 357.8 410 46.3
BraA01t01454Z Brassica rapa HOM05D005474 ORTHO05D006551 2.4e-96 356.7 408 45.6
vmacro11424 Vaccinium macrocarpon HOM05D005474 ORTHO05D006551 3.1e-96 356.3 446 43.5
AL7G29500 Arabidopsis lyrata HOM05D005474 ORTHO05D006551 1.5e-95 354.0 447 43.6
Peaxi162Scf00074g00931 Petunia axillaris HOM05D005474 ORTHO05D006551 1.5e-95 354.0 390 45.4
ATR0602G179 Amborella trichopoda HOM05D005474 ORTHO05D006551 2.0e-95 353.6 457 43.5
AT4G23860 Arabidopsis thaliana HOM05D005474 ORTHO05D006551 4.5e-95 352.4 450 43.1
Glyma.11G017200 Glycine max HOM05D005474 ORTHO05D006551 2.2e-94 350.1 390 46.2
arahy.Tifrunner.gnm1.ann1.Z0ACGZ Arachis hypogaea HOM05D005474 ORTHO05D006551 1.9e-93 347.1 489 39.3
PSO063G4762 Papaver somniferum HOM05D005474 ORTHO05D006551 4.2e-93 345.9 402 44.5
CiPaw.11G121500 Carya illinoinensis HOM05D005474 ORTHO05D006551 5.4e-93 345.5 388 45.4
EL10Ac5g12915 Beta vulgaris HOM05D005474 ORTHO05D006551 9.3e-93 344.7 448 42.0
arahy.Tifrunner.gnm1.ann1.1UFI8K Arachis hypogaea HOM05D005474 ORTHO05D006551 1.3e-89 334.3 517 37.3
Sabra03G0101000 Salix brachista HOM05D005474 ORTHO05D006551 6.2e-89 332.0 515 37.7
Oeu034333.1 Olea europaea HOM05D005474 ORTHO05D006551 1.5e-87 327.4 367 46.0
CiPaw.12G083000 Carya illinoinensis HOM05D005474 ORTHO05D006551 2.3e-83 313.5 399 41.9
MBI06_g08456_MAGBIO Magnolia biondii HOM05D005474 ORTHO05D006551 1.2e-76 291.2 274 52.9
Hma1.2p1_1746F.1_g300392 Hydrangea macrophylla HOM05D005474 ORTHO05D006551 3.1e-72 276.6 341 43.7
Hma1.2p1_1746F.1_g300400 Hydrangea macrophylla HOM05D005474 ORTHO05D006551 3.1e-72 276.6 341 43.7
CBR_g50475 Chara braunii HOM05D005474 ORTHO05D006551 7.6e-71 271.9 539 33.4
SEGI_30990 Sequoiadendron giganteum HOM05D005474 ORTHO05D006551 1.7e-70 270.8 426 36.9
CDE02G2859 Ceratophyllum demersum HOM05D002290 ORTHO05D002532 5.5e-69 265.8 254 53.1
PGSC0003DMG401028714 Solanum tuberosum HOM05D005474 ORTHO05D006551 1.8e-64 250.8 254 51.6
CSS0018913 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 1.1e-61 241.5 165 66.7
TAR636G0569 Trochodendron aralioides HOM05D005474 ORTHO05D006551 1.4e-59 234.6 157 68.2
CSS0034140 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 1.1e-58 231.5 140 72.1
DCAR_027700 Daucus carota HOM05D005474 ORTHO05D006551 3.9e-51 206.5 337 34.7
Nn3g19016 Nelumbo nucifera HOM05D005474 ORTHO05D006551 8.2e-49 198.7 422 34.1
CSS0004779 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 7.7e-47 192.2 137 65.7
PSO017G5523 Papaver somniferum HOM05D005474 ORTHO05D006551 9.4e-45 185.3 121 64.5
CSS0021446 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 3.0e-35 153.7 90 72.2
unitig_0.g2293 Utricularia gibba HOM05D005474 ORTHO05D006551 5.9e-23 112.8 173 39.3
PGSC0003DMG400011405 Solanum tuberosum HOM05D005474 ORTHO05D006551 1.3e-22 111.7 194 34.5
SEGI_08425 Sequoiadendron giganteum HOM05D005474 ORTHO05D006551 1.7e-22 111.3 66 74.2
Duzib084G0281 Durio zibethinus HOM05D005474 ORTHO05D006551 1.9e-21 107.8 75 65.3
SHI06991 Sapria himalayana HOM05D005474 ORTHO05D006551 7.3e-21 105.9 57 78.9
Hma1.2p1_1746F.1_g300390 Hydrangea macrophylla HOM05D005474 ORTHO05D006551 3.0e-19 100.5 73 65.8
Hma1.2p1_1746F.1_g300398 Hydrangea macrophylla HOM05D005474 ORTHO05D006551 3.0e-19 100.5 73 65.8
Ah.07g197430 Amaranthus hybridus HOM05D005474 ORTHO05D006551 7.8e-15 85.9 61 57.4
Cfa025394 Carpinus fangiana HOM05D005474 ORTHO05D122676 1.2e-12 78.6 189 32.3
CDE08G0829 Ceratophyllum demersum HOM05D005474 ORTHO05D006551 3.6e-12 77.0 60 63.3
MBI18_g28764_MAGBIO Magnolia biondii HOM05D005474 ORTHO05D006551 1.7e-06 58.2 61 44.3
PGSC0003DMG402028714 Solanum tuberosum HOM05D005474 ORTHO05D006551 6.6e-06 56.2 76 42.1


User provided reference genes

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