Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO200G0145 Selaginella moellendorffii HOM05D003818 ORTHO05D004541 2.2e-48 195.3 97 100.0
Phvul.007G066800 Phaseolus vulgaris HOM05D003818 ORTHO05D004541 1.2e-43 179.5 95 90.5
MBI04_g00300_MAGBIO Magnolia biondii HOM05D003818 ORTHO05D004541 1.6e-43 179.1 95 91.6
Glyma.10G238600 Glycine max HOM05D003818 ORTHO05D004541 2.1e-43 178.7 95 90.5
Lalb_Chr06g0161031 Lupinus albus HOM05D003818 ORTHO05D004541 2.1e-43 178.7 95 90.5
Lalb_Chr21g0304961 Lupinus albus HOM05D003818 ORTHO05D004541 2.1e-43 178.7 95 90.5
Medtr0019s0160 Medicago truncatula HOM05D003818 ORTHO05D004541 2.1e-43 178.7 95 89.5
VMungo0720G0599 Vigna mungo HOM05D003818 ORTHO05D004541 2.1e-43 178.7 95 92.6
Mapoly0001s0266 Marchantia polymorpha HOM05D003818 ORTHO05D004541 3.6e-43 177.9 94 92.6
Cfa020017 Carpinus fangiana HOM05D003818 ORTHO05D004541 4.7e-43 177.6 95 89.5
Haze_13747 Corylus avellana HOM05D003818 ORTHO05D004541 4.7e-43 177.6 95 89.5
Haze_20202 Corylus avellana HOM05D003818 ORTHO05D004541 4.7e-43 177.6 95 89.5
Dinv35185 Davidia involucrata HOM05D003818 ORTHO05D004541 4.7e-43 177.6 95 88.4
Glyma.20G155900 Glycine max HOM05D003818 ORTHO05D004541 4.7e-43 177.6 95 90.5
MBI07_g30196_MAGBIO Magnolia biondii HOM05D003818 ORTHO05D004541 4.7e-43 177.6 95 90.5
Phvul.007G009900 Phaseolus vulgaris HOM05D003818 ORTHO05D004541 4.7e-43 177.6 95 89.5
Psat3g070640 Pisum sativum HOM05D003818 ORTHO05D004541 4.7e-43 177.6 95 89.5
QL06p049138 Quercus lobata HOM05D003818 ORTHO05D004541 4.7e-43 177.6 95 89.5
SGA_v2.0_scaffold59G20747 Striga asiatica HOM05D003818 ORTHO05D004541 4.7e-43 177.6 95 89.5
ATR0757G129 Amborella trichopoda HOM05D003818 ORTHO05D004541 6.2e-43 177.2 93 91.4
arahy.Tifrunner.gnm1.ann1.7N83Z4 Arachis hypogaea HOM05D003818 ORTHO05D004541 6.2e-43 177.2 95 89.5
arahy.Tifrunner.gnm1.ann1.Y3E72Q Arachis hypogaea HOM05D003818 ORTHO05D004541 6.2e-43 177.2 95 89.5
CSS0048006 Camellia sinensis var. sinensis HOM05D003818 ORTHO05D004541 6.2e-43 177.2 95 88.4
Dinv28474 Davidia involucrata HOM05D003818 ORTHO05D004541 6.2e-43 177.2 95 88.4
MD12G1011200 Malus domestica HOM05D003818 ORTHO05D004541 6.2e-43 177.2 95 89.5
SEGI_10630 Sequoiadendron giganteum HOM05D003818 ORTHO05D004541 6.2e-43 177.2 94 91.5
Cpa.g.sc370.10 Carica papaya HOM05D003818 ORTHO05D004541 8.1e-43 176.8 95 89.5
Cfa008286 Carpinus fangiana HOM05D003818 ORTHO05D004541 8.1e-43 176.8 95 89.5
Pp3c16_17050 Physcomitrium patens HOM05D003818 ORTHO05D004541 8.1e-43 176.8 92 93.5
TPR.G3844 Trifolium pratense HOM05D003818 ORTHO05D004541 8.1e-43 176.8 95 88.4
TWI23G0179 Tripterygium wilfordii HOM05D003818 ORTHO05D004541 8.1e-43 176.8 95 89.5
TWI39G1222 Tripterygium wilfordii HOM05D003818 ORTHO05D004541 8.1e-43 176.8 95 89.5
TAR374G0305 Trochodendron aralioides HOM05D003818 ORTHO05D004541 8.1e-43 176.8 95 89.5
GSVIVG01010613001 Vitis vinifera HOM05D003818 ORTHO05D004541 8.1e-43 176.8 95 89.5
Migut.K00399 Erythranthe guttata HOM05D003818 ORTHO05D004541 1.1e-42 176.4 95 88.4
Lsat_1_v5_gn_1_9221 Lactuca sativa HOM05D003818 ORTHO05D004541 1.1e-42 176.4 95 88.4
Manes.06G144400 Manihot esculenta HOM05D003818 ORTHO05D004541 1.1e-42 176.4 95 88.4
MSTRG.27132 Avicennia marina HOM05D003818 ORTHO05D004541 1.4e-42 176.0 95 87.4
CDE02G0031 Ceratophyllum demersum HOM05D003818 ORTHO05D004541 1.4e-42 176.0 88 94.3
CDE06G2832 Ceratophyllum demersum HOM05D003818 ORTHO05D004541 1.4e-42 176.0 96 86.5
DCAR_018174 Daucus carota HOM05D003818 ORTHO05D004541 1.4e-42 176.0 93 89.2
HanXRQChr16g0532841 Helianthus annuus HOM05D003818 ORTHO05D004541 1.4e-42 176.0 95 87.4
Oeu061636.1 Olea europaea HOM05D003818 ORTHO05D004541 1.4e-42 176.0 95 89.5
AagrBONN_evm.TU.Sc2ySwM_344.4289 Anthoceros agrestis HOM05D003818 ORTHO05D004541 1.8e-42 175.6 97 87.6
Eucgr.H00421 Eucalyptus grandis HOM05D003818 ORTHO05D004541 1.8e-42 175.6 95 88.4
THA.LOC104818368 Tarenaya hassleriana HOM05D003818 ORTHO05D004541 2.4e-42 175.3 95 90.5
GSVIVG01020800001 Vitis vinifera HOM05D003818 ORTHO05D004541 2.4e-42 175.3 95 91.6
CiPaw.04G066900 Carya illinoinensis HOM05D003818 ORTHO05D004541 3.1e-42 174.9 87 95.4
DCAR_009510 Daucus carota HOM05D000059 ORTHO05D000128 3.1e-42 174.9 92 90.2
HanXRQChr04g0108631 Helianthus annuus HOM05D003818 ORTHO05D004541 3.1e-42 174.9 95 89.5
Potri.012G136900 Populus trichocarpa HOM05D003818 ORTHO05D004541 3.1e-42 174.9 95 87.4
Sc23g0003230 Simmondsia chinensis HOM05D003818 ORTHO05D004541 3.1e-42 174.9 87 95.4
Solyc09g010500.3 Solanum lycopersicum HOM05D003818 ORTHO05D004541 3.1e-42 174.9 95 87.4
Sopen09g005230 Solanum pennellii HOM05D003818 ORTHO05D004541 3.1e-42 174.9 95 87.4
VMungo0720G0479 Vigna mungo HOM05D001872 ORTHO05D001859 3.1e-42 174.9 94 89.4
Lj2g0002682 Lotus japonicus HOM05D003818 ORTHO05D004541 4.0e-42 174.5 95 89.5
LjContig00564g0007738 Lotus japonicus HOM05D003818 ORTHO05D004541 4.0e-42 174.5 95 89.5
PGSC0003DMG400008922 Solanum tuberosum HOM05D003818 ORTHO05D004541 4.0e-42 174.5 93 89.2
TAR375G1045 Trochodendron aralioides HOM05D003818 ORTHO05D004541 4.0e-42 174.5 95 87.4
MELO3C006881.2 Cucumis melo HOM05D003818 ORTHO05D004541 5.2e-42 174.1 95 88.4
Medtr7g092450 Medicago truncatula HOM05D003818 ORTHO05D004541 5.2e-42 174.1 95 88.4
ClCG05G016800 Citrullus lanatus HOM05D002695 ORTHO05D002964 6.9e-42 173.7 95 88.4
Lsat_1_v5_gn_3_64081 Lactuca sativa HOM05D003818 ORTHO05D004541 6.9e-42 173.7 96 85.4
Os03g0586600 Oryza sativa ssp. japonica HOM05D003818 ORTHO05D004541 6.9e-42 173.7 95 87.4
Potri.015G138800 Populus trichocarpa HOM05D003818 ORTHO05D004541 6.9e-42 173.7 95 87.4
Sabra15G0149800 Salix brachista HOM05D003818 ORTHO05D004541 6.9e-42 173.7 95 87.4
Hma1.2p1_0099F.1_g048510 Hydrangea macrophylla HOM05D003818 ORTHO05D004541 9.0e-42 173.3 95 87.4
unitig_0.g2487 Utricularia gibba HOM05D003818 ORTHO05D004541 9.0e-42 173.3 93 91.4
MSTRG.26327 Avicennia marina HOM05D003818 ORTHO05D004541 1.2e-41 172.9 93 91.4
ECA247G1139 Erigeron canadensis HOM05D003818 ORTHO05D004541 1.2e-41 172.9 93 90.3
Nn3g21139 Nelumbo nucifera HOM05D003818 ORTHO05D004541 1.2e-41 172.9 95 87.4
Cc02_g03330 Coffea canephora HOM05D003818 ORTHO05D004541 1.5e-41 172.6 95 87.4
FvH4_2g14180 Fragaria vesca HOM05D003818 ORTHO05D004541 1.5e-41 172.6 95 86.3
FAN15G1651 Fragaria x ananassa HOM05D003818 ORTHO05D004541 1.5e-41 172.6 95 86.3
FAN24G1752 Fragaria x ananassa HOM05D003818 ORTHO05D004541 1.5e-41 172.6 95 86.3
FAN27G0424 Fragaria x ananassa HOM05D003818 ORTHO05D004541 1.5e-41 172.6 95 86.3
Rhsim03G0177700 Rhododendron simsii HOM05D003818 ORTHO05D004541 1.5e-41 172.6 92 89.1
Rhsim05G0017100 Rhododendron simsii HOM05D003818 ORTHO05D004541 1.5e-41 172.6 95 87.4
CsaV3_3G016860 Cucumis sativus L. HOM05D003818 ORTHO05D004541 2.0e-41 172.2 95 88.4
Gohir.A08G082700 Gossypium hirsutum HOM05D003818 ORTHO05D004541 2.0e-41 172.2 96 89.6
Gorai.004G121300 Gossypium raimondii HOM05D003818 ORTHO05D004541 2.0e-41 172.2 96 89.6
RcHm_v2.0_Chr6g0276321 Rosa chinensis HOM05D003818 ORTHO05D004541 2.0e-41 172.2 95 86.3
THA.LOC104819386 Tarenaya hassleriana HOM05D003818 ORTHO05D004541 2.0e-41 172.2 95 89.5
Thecc.03G171400 Theobroma cacao HOM05D003818 ORTHO05D004541 2.0e-41 172.2 87 95.4
Actinidia31809 Actinidia chinensis HOM05D003818 ORTHO05D004541 2.6e-41 171.8 95 86.3
EL10Ac1g00990 Beta vulgaris HOM05D003818 ORTHO05D004541 2.6e-41 171.8 95 87.4
Os07g0463100 Oryza sativa ssp. japonica HOM05D003818 ORTHO05D004541 2.6e-41 171.8 93 88.2
Hund27319 Selenicereus undatus HOM05D003818 ORTHO05D004541 2.6e-41 171.8 95 87.4
Zm00001eb219520 Zea mays HOM05D003818 ORTHO05D004541 2.6e-41 171.8 95 87.4
AUR62004298 Chenopodium quinoa HOM05D003818 ORTHO05D004541 3.4e-41 171.4 95 87.4
Duzib068G1062 Durio zibethinus HOM05D003818 ORTHO05D004541 3.4e-41 171.4 96 88.5
Hma1.2p1_0270F.1_g108370 Hydrangea macrophylla HOM05D003818 ORTHO05D004541 3.4e-41 171.4 99 84.8
Manes.14G028600 Manihot esculenta HOM05D003818 ORTHO05D004541 3.4e-41 171.4 95 86.3
Aqoxy7G00432 Aquilegia oxysepala HOM05D003818 ORTHO05D004541 4.4e-41 171.0 86 95.3
Ciclev10006171m.g Citrus clementina HOM05D003818 ORTHO05D004541 4.4e-41 171.0 84 97.6
Duzib084G1211 Durio zibethinus HOM05D003818 ORTHO05D004541 4.4e-41 171.0 84 97.6
Gohir.A11G009700 Gossypium hirsutum HOM05D003818 ORTHO05D004541 4.4e-41 171.0 84 97.6
Gohir.D11G009000 Gossypium hirsutum HOM05D003818 ORTHO05D004541 4.4e-41 171.0 84 97.6
Gorai.007G010600 Gossypium raimondii HOM05D003818 ORTHO05D004541 4.4e-41 171.0 84 97.6
MD17G1234800 Malus domestica HOM05D003818 ORTHO05D004541 4.4e-41 171.0 95 84.2
Sed0011620 Sechium edule HOM05D003818 ORTHO05D004541 4.4e-41 171.0 95 87.4
CsaV3_3G046320 Cucumis sativus L. HOM05D003818 ORTHO05D004541 5.8e-41 170.6 91 90.1
AUR62022747 Chenopodium quinoa HOM05D003818 ORTHO05D004541 7.6e-41 170.2 95 86.3
PGR102G2559 Punica granatum HOM05D003818 ORTHO05D004541 7.6e-41 170.2 95 87.4
Aa31LG9G1570 Aethionema arabicum HOM05D003818 ORTHO05D004541 9.9e-41 169.9 86 93.0
Gohir.D08G112900 Gossypium hirsutum HOM05D003818 ORTHO05D004541 9.9e-41 169.9 96 88.5
PSO541G1664 Papaver somniferum HOM05D003818 ORTHO05D004541 9.9e-41 169.9 96 86.5
Prupe.3G134400 Prunus persica HOM05D003818 ORTHO05D004541 9.9e-41 169.9 95 83.2
Sed0012084 Sechium edule HOM05D003818 ORTHO05D004541 9.9e-41 169.9 93 88.2
BcaB04g19460 Brassica carinata HOM05D003818 ORTHO05D004541 1.3e-40 169.5 91 87.9
A09p03630 Brassica napus HOM05D003818 ORTHO05D004541 1.3e-40 169.5 91 87.9
C09p03860 Brassica napus HOM05D003818 ORTHO05D004541 1.3e-40 169.5 91 87.9
BraA09t36001Z Brassica rapa HOM05D003818 ORTHO05D004541 1.3e-40 169.5 91 87.9
PSO478G0785 Papaver somniferum HOM05D003818 ORTHO05D004541 1.3e-40 169.5 95 87.4
PSO675G1382 Papaver somniferum HOM05D003818 ORTHO05D004541 1.3e-40 169.5 95 87.4
PSO782G3144 Papaver somniferum HOM05D003818 ORTHO05D004541 1.3e-40 169.5 95 87.4
BcaC04g23878 Brassica carinata HOM05D003818 ORTHO05D004541 1.7e-40 169.1 91 87.9
BolC9t53311H Brassica oleracea HOM05D003818 ORTHO05D004541 1.7e-40 169.1 91 87.9
AL3G42280 Arabidopsis lyrata HOM05D003818 ORTHO05D004541 2.2e-40 168.7 95 86.3
AL8G26260 Arabidopsis lyrata HOM05D003818 ORTHO05D004541 2.2e-40 168.7 95 86.3
AT5G51940 Arabidopsis thaliana HOM05D003818 ORTHO05D004541 2.2e-40 168.7 95 86.3
BcaB06g27416 Brassica carinata HOM05D003818 ORTHO05D004541 2.2e-40 168.7 95 86.3
A04p12880 Brassica napus HOM05D003818 ORTHO05D004541 2.2e-40 168.7 95 86.3
C04p46580 Brassica napus HOM05D003818 ORTHO05D004541 2.2e-40 168.7 95 86.3
BolC4t26244H Brassica oleracea HOM05D003818 ORTHO05D004541 2.2e-40 168.7 95 86.3
BraA04t16951Z Brassica rapa HOM05D003818 ORTHO05D004541 2.2e-40 168.7 95 86.3
Carub.0003s2626 Capsella rubella HOM05D003818 ORTHO05D004541 2.2e-40 168.7 95 86.3
Carub.0008s1203 Capsella rubella HOM05D003818 ORTHO05D004541 2.2e-40 168.7 95 86.3
Thhalv10005087m.g Eutrema salsugineum HOM05D003818 ORTHO05D004541 2.2e-40 168.7 91 86.8
Thhalv10027983m.g Eutrema salsugineum HOM05D003818 ORTHO05D004541 2.2e-40 168.7 95 86.3
Sp7g01990 Schrenkiella parvula HOM05D003818 ORTHO05D004541 2.2e-40 168.7 95 86.3
vmacro06714 Vaccinium macrocarpon HOM05D003818 ORTHO05D004541 2.9e-40 168.3 98 85.7
Atru.chr3.2134 Acer truncatum HOM05D003818 ORTHO05D004541 3.8e-40 167.9 93 86.0
CARHR264880 Cardamine hirsuta HOM05D003818 ORTHO05D004541 4.9e-40 167.5 95 85.3
COL.COLO4_14270 Corchorus olitorius HOM05D003818 ORTHO05D004541 6.4e-40 167.2 94 88.3
AT2G04630 Arabidopsis thaliana HOM05D003818 ORTHO05D004541 8.4e-40 166.8 95 86.3
Sp2g17150 Schrenkiella parvula HOM05D003818 ORTHO05D004541 8.4e-40 166.8 91 86.8
Atru.chr1.512 Acer truncatum HOM05D003818 ORTHO05D004541 1.4e-39 166.0 84 95.2
Sabra12G0102700 Salix brachista HOM05D003818 ORTHO05D004541 1.9e-39 165.6 108 76.9
Nitab4.5_0017332g0010 Nicotiana tabacum HOM05D003818 ORTHO05D004541 2.7e-38 161.8 101 79.2
Gohir.D12G260866 Gossypium hirsutum HOM05D003818 ORTHO05D004541 4.6e-38 161.0 84 91.7
SGA_v2.0_scaffold50G18457 Striga asiatica HOM05D003818 ORTHO05D004541 3.0e-37 158.3 131 64.1
CBR_g31915 Chara braunii HOM05D003818 ORTHO05D004541 5.1e-37 157.5 94 81.9
vmacro16312 Vaccinium macrocarpon HOM05D003818 ORTHO05D004541 5.1e-37 157.5 134 64.9
MD09G1242800 Malus domestica HOM05D003818 ORTHO05D004541 1.5e-36 156.0 87 85.1
ClCG05G007860 Citrullus lanatus HOM05D003818 ORTHO05D004541 9.6e-36 153.3 134 61.9
Aqoxy6G01685 Aquilegia oxysepala HOM05D003818 ORTHO05D004541 1.4e-34 149.4 87 85.1
Oeu030115.1 Olea europaea HOM05D003818 ORTHO05D004541 2.6e-33 145.2 95 75.8
Peaxi162Scf00039g01318 Petunia axillaris HOM05D003818 ORTHO05D004541 9.9e-33 143.3 95 75.8
MCO13G124 Micromonas commoda HOM05D003818 ORTHO05D004541 2.2e-32 142.1 82 81.7
Cre01.g002200 Chlamydomonas reinhardtii HOM05D003818 ORTHO05D004541 8.4e-32 140.2 79 83.5
PRCOL_00007084 Prasinoderma coloniale HOM05D003818 ORTHO05D004541 1.4e-31 139.4 77 85.7
Peaxi162Scf01172g00037 Petunia axillaris HOM05D003818 ORTHO05D004541 3.5e-30 134.8 92 73.9
TAR375G0179 Trochodendron aralioides HOM05D003818 ORTHO05D004541 1.0e-29 133.3 81 81.5
SalBow5G5531 Salvia bowleyana HOM05D003818 ORTHO05D004541 3.9e-29 131.3 77 83.1
Oeu021768.1 Olea europaea HOM05D003818 ORTHO05D004541 5.1e-29 131.0 68 92.6
Nitab4.5_0006124g0010 Nicotiana tabacum HOM05D003818 ORTHO05D004541 4.3e-28 127.9 74 85.1
CAN.G97.6 Capsicum annuum HOM05D003818 ORTHO05D004541 1.3e-27 126.3 74 83.8
CANSAT56G1911 Cannabis sativa HOM05D003818 ORTHO05D004541 1.6e-27 125.9 74 82.4
Zm00001eb049200 Zea mays HOM05D003818 ORTHO05D004541 4.8e-27 124.4 74 83.8
Haze_26305 Corylus avellana HOM05D003818 ORTHO05D004541 4.0e-26 121.3 69 84.1
arahy.Tifrunner.gnm1.ann1.36XVJD Arachis hypogaea HOM05D003818 ORTHO05D004541 5.3e-26 120.9 87 72.4
arahy.Tifrunner.gnm1.ann1.28837M Arachis hypogaea HOM05D003818 ORTHO05D004541 2.2e-24 115.5 85 68.2
arahy.Tifrunner.gnm1.ann1.99YBLU Arachis hypogaea HOM05D003818 ORTHO05D004541 2.2e-24 115.5 85 68.2
TAR374G0228 Trochodendron aralioides HOM05D003818 ORTHO05D004541 2.9e-24 115.2 60 90.0
Haze_09431 Corylus avellana HOM05D003818 ORTHO05D004541 1.6e-22 109.4 95 62.1
AagrBONN_evm.TU.Sc2ySwM_344.4292 Anthoceros agrestis HOM05D003818 ORTHO05D004541 1.5e-20 102.8 84 63.1
MELO3C003707.2 Cucumis melo HOM05D003818 ORTHO05D004541 5.6e-20 100.9 58 82.8
Actinidia03108 Actinidia chinensis HOM05D003818 ORTHO05D054983 1.5e-17 92.8 45 91.1
VMungo0647G2358 Vigna mungo HOM05D003818 ORTHO05D004541 5.8e-17 90.9 57 84.2
SalBow8G3306 Salvia bowleyana HOM05D003818 ORTHO05D004541 4.9e-16 87.8 72 61.1
SalBow8G5018 Salvia bowleyana HOM05D003818 ORTHO05D004541 4.9e-16 87.8 72 61.1
arahy.Tifrunner.gnm1.ann1.TF2L72 Arachis hypogaea HOM05D003818 ORTHO05D004541 6.5e-16 87.4 53 81.1
Nitab4.5_0002113g0140 Nicotiana tabacum HOM05D003818 ORTHO05D004541 7.1e-15 84.0 58 75.9
Oeu021769.1 Olea europaea HOM05D003818 ORTHO05D004541 1.2e-14 83.2 52 78.8
arahy.Tifrunner.gnm1.ann1.VWKV4W Arachis hypogaea HOM05D003818 ORTHO05D004541 1.6e-14 82.8 53 77.4
arahy.Tifrunner.gnm1.ann1.FSRU1U Arachis hypogaea HOM05D003818 ORTHO05D004541 3.5e-14 81.6 52 78.8
Prupe.7G013200 Prunus persica HOM05D003818 ORTHO05D004541 7.9e-14 80.5 52 76.9
Nitab4.5_0002077g0060 Nicotiana tabacum HOM05D003818 ORTHO05D004541 1.5e-12 76.3 95 46.3
Os08g0426000 Oryza sativa ssp. japonica HOM05D003818 ORTHO05D295196 2.2e-11 72.4 49 73.5
PGR142G2678 Punica granatum HOM05D003818 ORTHO05D004541 3.1e-10 68.6 46 76.1
arahy.Tifrunner.gnm1.ann1.VXTW3V Arachis hypogaea HOM05D003818 ORTHO05D013217 2.6e-09 65.5 35 91.4


User provided reference genes

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