Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO200G0034 Selaginella moellendorffii HOM05D006351 ORTHO05D007796 1.9e-306 1055.0 548 100.0
AagrBONN_evm.TU.Sc2ySwM_368.1425 Anthoceros agrestis HOM05D006351 ORTHO05D007796 2.3e-57 227.6 634 28.7
Mapoly0027s0143 Marchantia polymorpha HOM05D006351 ORTHO05D007796 3.3e-56 223.8 589 32.1
Pp3c20_13310 Physcomitrium patens HOM05D006351 ORTHO05D007796 2.2e-52 211.1 575 31.0
TAR625G1335 Trochodendron aralioides HOM05D006351 ORTHO05D007796 1.6e-47 194.9 601 30.0
Sopen01g038480 Solanum pennellii HOM05D006351 ORTHO05D007796 4.4e-45 186.8 586 28.0
Solyc01g094670.4 Solanum lycopersicum HOM05D006351 ORTHO05D007796 3.7e-44 183.7 559 28.6
Potri.006G259600 Populus trichocarpa HOM05D006351 ORTHO05D007796 6.4e-44 183.0 587 29.1
SalBow3G2878 Salvia bowleyana HOM05D006351 ORTHO05D007796 6.4e-44 183.0 521 28.6
Oeu028190.1 Olea europaea HOM05D006351 ORTHO05D007796 1.4e-43 181.8 569 29.3
Pp3c8_15630 Physcomitrium patens HOM05D006351 ORTHO05D007796 9.2e-43 179.1 512 30.9
HPP92_020077 Vanilla planifolia HOM05D006351 ORTHO05D007796 9.2e-43 179.1 529 30.6
MSTRG.9683 Avicennia marina HOM05D006351 ORTHO05D007796 2.7e-42 177.6 519 29.3
ATR0629G052 Amborella trichopoda HOM05D006351 ORTHO05D007796 1.0e-41 175.6 611 28.3
Sabra06G0202800 Salix brachista HOM05D006351 ORTHO05D007796 1.7e-41 174.9 547 28.7
Peaxi162Scf00116g00510 Petunia axillaris HOM05D006351 ORTHO05D007796 3.0e-41 174.1 594 27.6
Eucgr.C01685 Eucalyptus grandis HOM05D006351 ORTHO05D007796 3.9e-41 173.7 587 29.0
MD15G1131200 Malus domestica HOM05D006351 ORTHO05D007796 6.6e-41 172.9 515 29.5
PGR119G2225 Punica granatum HOM05D006351 ORTHO05D007796 3.3e-40 170.6 559 28.4
vmacro11222 Vaccinium macrocarpon HOM05D006351 ORTHO05D007796 4.3e-40 170.2 534 28.8
Dinv03414 Davidia involucrata HOM05D006351 ORTHO05D007796 5.6e-40 169.9 575 28.2
Manes.03G011600 Manihot esculenta HOM05D006351 ORTHO05D007796 9.5e-40 169.1 595 25.5
Prupe.1G486500 Prunus persica HOM05D006351 ORTHO05D007796 9.5e-40 169.1 513 28.1
Lsat_1_v5_gn_6_115401 Lactuca sativa HOM05D006351 ORTHO05D007796 2.8e-39 167.5 595 28.1
TPR.G32564 Trifolium pratense HOM05D006351 ORTHO05D007796 2.8e-39 167.5 526 28.5
CSS0041020 Camellia sinensis var. sinensis HOM05D006351 ORTHO05D007796 3.6e-39 167.2 555 28.8
DCAR_018801 Daucus carota HOM05D006351 ORTHO05D007796 3.6e-39 167.2 565 25.5
CANSAT54G0019 Cannabis sativa HOM05D006351 ORTHO05D007796 4.7e-39 166.8 519 28.5
Ca_13046_v3 Cicer arietinum L. HOM05D006351 ORTHO05D007796 4.7e-39 166.8 526 28.9
Lalb_Chr22g0361451 Lupinus albus HOM05D006351 ORTHO05D007796 4.7e-39 166.8 527 28.7
TWI34G1294 Tripterygium wilfordii HOM05D006351 ORTHO05D007796 4.7e-39 166.8 524 27.9
CsaV3_4G036840 Cucumis sativus L. HOM05D006351 ORTHO05D007796 6.2e-39 166.4 543 26.7
AUR62031572 Chenopodium quinoa HOM05D006351 ORTHO05D007796 8.1e-39 166.0 603 27.0
Psat6g028600 Pisum sativum HOM05D006351 ORTHO05D007796 1.4e-38 165.2 521 28.6
Aqoxy7G03341 Aquilegia oxysepala HOM05D006351 ORTHO05D007796 1.8e-38 164.9 526 29.1
Medtr4g014840 Medicago truncatula HOM05D006351 ORTHO05D007796 1.8e-38 164.9 522 27.0
HanXRQChr16g0511151 Helianthus annuus HOM05D006351 ORTHO05D007796 3.1e-38 164.1 581 27.4
MBI14_g15653_MAGBIO Magnolia biondii HOM05D006351 ORTHO05D007796 6.8e-38 162.9 527 28.1
GSVIVG01035918001 Vitis vinifera HOM05D006351 ORTHO05D007796 6.8e-38 162.9 524 27.9
CiPaw.08G008200 Carya illinoinensis HOM05D006351 ORTHO05D007796 2.0e-37 161.4 586 28.0
Lj5g0002049 Lotus japonicus HOM05D006351 ORTHO05D007796 4.4e-37 160.2 525 28.2
Nn8g39723 Nelumbo nucifera HOM05D006351 ORTHO05D007796 4.4e-37 160.2 517 27.3
Haze_21455 Corylus avellana HOM05D006351 ORTHO05D007796 7.6e-37 159.5 530 28.3
arahy.Tifrunner.gnm1.ann1.DQM65W Arachis hypogaea HOM05D006351 ORTHO05D007796 2.2e-36 157.9 548 27.4
RcHm_v2.0_Chr6g0297191 Rosa chinensis HOM05D006351 ORTHO05D007796 2.9e-36 157.5 517 27.1
Thecc.09G019400 Theobroma cacao HOM05D006351 ORTHO05D007796 6.4e-36 156.4 521 27.6
arahy.Tifrunner.gnm1.ann1.52204A Arachis hypogaea HOM05D006351 ORTHO05D007796 1.4e-35 155.2 550 27.3
Cfa013099 Carpinus fangiana HOM05D006351 ORTHO05D007796 1.4e-35 155.2 532 28.4
ECA246G3333 Erigeron canadensis HOM05D006351 ORTHO05D007796 4.1e-35 153.7 494 27.1
FvH4_2g28280 Fragaria vesca HOM05D006351 ORTHO05D007796 5.4e-35 153.3 520 26.5
Duzib150G0289 Durio zibethinus HOM05D006351 ORTHO05D007796 7.1e-35 152.9 516 27.7
Ciclev10007789m.g Citrus clementina HOM05D006351 ORTHO05D007796 1.2e-34 152.1 558 28.1
arahy.Tifrunner.gnm1.ann1.5RBZ70 Arachis hypogaea HOM05D006351 ORTHO05D007796 2.1e-34 151.4 548 26.6
Actinidia22310 Actinidia chinensis HOM05D006351 ORTHO05D007796 2.7e-34 151.0 529 26.8
Gohir.A07G030500 Gossypium hirsutum HOM05D006351 ORTHO05D007796 3.5e-34 150.6 520 28.3
Sc06g0000450 Simmondsia chinensis HOM05D006351 ORTHO05D007796 6.0e-34 149.8 515 26.6
Cc08_g00180 Coffea canephora HOM05D006351 ORTHO05D007796 1.0e-33 149.1 546 27.8
Os08g0290100 Oryza sativa ssp. japonica HOM05D006351 ORTHO05D007796 1.3e-33 148.7 592 27.4
Gohir.D07G034400 Gossypium hirsutum HOM05D006351 ORTHO05D007796 1.7e-33 148.3 512 28.5
arahy.Tifrunner.gnm1.ann1.7H8NL8 Arachis hypogaea HOM05D006351 ORTHO05D007796 1.5e-32 145.2 551 27.6
Phvul.001G047200 Phaseolus vulgaris HOM05D006351 ORTHO05D007796 1.5e-32 145.2 531 25.4
VMungo0647G0679 Vigna mungo HOM05D006351 ORTHO05D007796 2.5e-32 144.4 529 26.3
Glyma.17G215800 Glycine max HOM05D006351 ORTHO05D007796 2.8e-31 141.0 459 27.7
Atru.chr7.2503_Atru.chr7.2504 Acer truncatum HOM05D006351 ORTHO05D007796 6.2e-31 139.8 565 26.4
ClCG05G016570 Citrullus lanatus HOM05D006351 ORTHO05D007796 1.1e-30 139.0 564 25.9
Lj8A733T33 Lonicera japonica HOM05D006351 ORTHO05D007796 1.1e-30 139.0 624 25.5
Migut.G00796 Erythranthe guttata HOM05D006351 ORTHO05D007796 1.4e-30 138.7 590 25.9
AT5G11030 Arabidopsis thaliana HOM05D006351 ORTHO05D007796 3.1e-30 137.5 555 26.3
Thhalv10013026m.g Eutrema salsugineum HOM05D006351 ORTHO05D007796 4.0e-30 137.1 560 26.4
THA.LOC104815006 Tarenaya hassleriana HOM05D006351 ORTHO05D007796 5.2e-30 136.7 530 26.8
AL6G21650 Arabidopsis lyrata HOM05D006351 ORTHO05D007796 8.9e-30 136.0 555 27.6
Carub.0006s0954 Capsella rubella HOM05D006351 ORTHO05D007796 1.2e-29 135.6 590 27.6
QL02p020121 Quercus lobata HOM05D006351 ORTHO05D007796 2.0e-29 134.8 608 25.7
Hund03479 Selenicereus undatus HOM05D006351 ORTHO05D007796 4.4e-29 133.7 637 25.6
EL10Ac2g04151 Beta vulgaris HOM05D006351 ORTHO05D007796 4.9e-28 130.2 661 23.8
MELO3C016986.2 Cucumis melo HOM05D006351 ORTHO05D007796 4.9e-28 130.2 462 27.7
SGA_v2.0_scaffold12G06223 Striga asiatica HOM05D006351 ORTHO05D007796 4.9e-28 130.2 622 25.1
COL.COLO4_18917 Corchorus olitorius HOM05D006351 ORTHO05D007796 2.7e-26 124.4 508 25.8
Aa31LG3G16100 Aethionema arabicum HOM05D006351 ORTHO05D007796 4.6e-26 123.6 553 25.7
BcaC04g19265 Brassica carinata HOM05D006351 ORTHO05D007796 6.0e-26 123.2 505 25.5
A10p26650 Brassica napus HOM05D006351 ORTHO05D007796 6.0e-26 123.2 502 25.9
C09p65820 Brassica napus HOM05D006351 ORTHO05D007796 7.8e-26 122.9 506 26.3
Cc11_g00420 Coffea canephora HOM05D006351 ORTHO05D007796 1.7e-25 121.7 179 38.5
CARHR202260 Cardamine hirsuta HOM05D006351 ORTHO05D007796 3.0e-25 120.9 473 27.5
FAN15G0846 Fragaria x ananassa HOM05D006351 ORTHO05D007796 3.0e-25 120.9 370 27.8
FAN24G1918 Fragaria x ananassa HOM05D006351 ORTHO05D007796 3.0e-25 120.9 370 27.0
FAN20G2359 Fragaria x ananassa HOM05D006351 ORTHO05D007796 8.7e-25 119.4 370 26.8
BraA10t44723Z Brassica rapa HOM05D006351 ORTHO05D007796 1.1e-24 119.0 503 25.6
AUR62012449 Chenopodium quinoa HOM05D006351 ORTHO05D007796 1.9e-24 118.2 463 27.0
BolC9t59403H Brassica oleracea HOM05D006351 ORTHO05D007796 5.6e-24 116.7 493 26.0
PSO782G3777 Papaver somniferum HOM05D006351 ORTHO05D007796 1.3e-23 115.5 500 25.4
unitig_0.g2412 Utricularia gibba HOM05D006351 ORTHO05D007796 1.3e-23 115.5 495 26.3
Sp6g32460 Schrenkiella parvula HOM05D006351 ORTHO05D007796 2.8e-23 114.4 506 26.1
Gorai.001G036000 Gossypium raimondii HOM05D006351 ORTHO05D007796 4.8e-23 113.6 444 27.5
Medtr1g013030 Medicago truncatula HOM05D006351 ORTHO05D007796 1.1e-22 112.5 199 36.2
Zm00001eb028280 Zea mays HOM05D006351 ORTHO05D007796 5.3e-22 110.2 443 27.3
FAN27G0329 Fragaria x ananassa HOM05D006351 ORTHO05D007796 5.8e-21 106.7 362 27.6
Ah.10g035670 Amaranthus hybridus HOM05D006351 ORTHO05D007796 7.6e-21 106.3 198 33.8
arahy.Tifrunner.gnm1.ann1.XZMU6N Arachis hypogaea HOM05D006351 ORTHO05D007796 2.4e-19 101.3 177 35.0
Nitab4.5_0000389g0140 Nicotiana tabacum HOM05D006351 ORTHO05D007796 2.4e-19 101.3 610 23.3
Nitab4.5_0002992g0070 Nicotiana tabacum HOM05D006351 ORTHO05D007796 2.3e-17 94.7 607 23.1
CBR_g18678 Chara braunii HOM05D006351 ORTHO05D007796 1.5e-13 82.0 264 26.9
SEGI_10292 Sequoiadendron giganteum HOM05D006351 ORTHO05D000001 1.5e-13 82.0 276 27.2
Hma1.2p1_0043F.1_g025900 Hydrangea macrophylla HOM05D006351 ORTHO05D007796 3.2e-11 74.3 350 26.0
Sed0014901 Sechium edule HOM05D006351 ORTHO05D007796 2.1e-10 71.6 364 27.7
FAN07G1533 Fragaria x ananassa HOM05D006351 ORTHO05D007796 1.8e-09 68.6 86 41.9
arahy.Tifrunner.gnm1.ann1.C8TN8W Arachis hypogaea HOM05D006351 ORTHO05D007796 1.5e-08 65.5 136 33.1
Cpa.g.sc187.30 Carica papaya HOM05D006351 ORTHO05D007796 3.3e-08 64.3 371 22.9
Medtr1g012260 Medicago truncatula HOM05D006351 ORTHO05D007796 7.4e-08 63.2 64 43.8
Hma1.2p1_0043F.1_g025890 Hydrangea macrophylla HOM05D006351 ORTHO05D007796 9.6e-08 62.8 243 27.6
CDE02G0453 Ceratophyllum demersum HOM05D006351 ORTHO05D007796 2.1e-07 61.6 258 28.3


User provided reference genes

Program Settings