Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO173G0006 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 1.7e-252 875.5 447 100.0
SMO146G0239 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 1.5e-245 852.4 447 97.8
SMO146G0204 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 1.2e-218 763.1 447 89.5
SMO173G0041 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 1.4e-169 600.1 414 77.3
Lj9C481T20 Lonicera japonica HOM05D005415 ORTHO05D006242 9.1e-73 278.5 448 40.2
Duzib068G0666 Durio zibethinus HOM05D005415 ORTHO05D006242 1.6e-72 277.7 466 38.4
Dinv11193 Davidia involucrata HOM05D005415 ORTHO05D006242 2.0e-72 277.3 455 38.5
Thecc.03G133700 Theobroma cacao HOM05D005415 ORTHO05D006242 1.0e-71 275.0 472 37.7
TAR629G2415 Trochodendron aralioides HOM05D005415 ORTHO05D006242 1.7e-71 274.2 458 38.2
COL.COLO4_16633 Corchorus olitorius HOM05D005415 ORTHO05D006242 2.9e-71 273.5 477 37.5
Sabra15G0120800 Salix brachista HOM05D005415 ORTHO05D006242 1.5e-70 271.2 501 36.9
Potri.015G100200 Populus trichocarpa HOM05D005415 ORTHO05D006242 4.2e-70 269.6 501 36.9
Atru.chr6.1849 Acer truncatum HOM05D005415 ORTHO05D006242 1.2e-69 268.1 462 38.7
Gorai.001G056700 Gossypium raimondii HOM05D005415 ORTHO05D006242 1.2e-69 268.1 466 37.6
Gohir.D07G053600 Gossypium hirsutum HOM05D005415 ORTHO05D006242 1.4e-68 264.6 466 37.3
Ca_17566_v3 Cicer arietinum L. HOM05D005415 ORTHO05D006242 1.8e-68 264.2 491 36.5
Ca_29727_v3 Cicer arietinum L. HOM05D005415 ORTHO05D006242 1.8e-68 264.2 491 36.5
THA.LOC104798938 Tarenaya hassleriana HOM05D005415 ORTHO05D006242 3.0e-68 263.5 513 37.2
Sc10g0010570 Simmondsia chinensis HOM05D005415 ORTHO05D006242 6.8e-68 262.3 475 37.1
QL10p002178 Quercus lobata HOM05D005415 ORTHO05D006242 1.2e-67 261.5 470 37.0
Ciclev10031056m.g Citrus clementina HOM05D005415 ORTHO05D006242 1.5e-67 261.2 477 37.1
CsaV3_1G000400 Cucumis sativus L. HOM05D005415 ORTHO05D006242 1.5e-67 261.2 500 37.2
Sed0003726 Sechium edule HOM05D005415 ORTHO05D006242 1.5e-67 261.2 482 37.8
MSTRG.22895 Avicennia marina HOM05D005415 ORTHO05D006242 2.6e-67 260.4 556 34.5
CiPaw.13G052100 Carya illinoinensis HOM05D005415 ORTHO05D006242 2.6e-67 260.4 469 36.5
Carub.0008s2427 Capsella rubella HOM05D005415 ORTHO05D006242 4.4e-67 259.6 466 38.2
Eucgr.B00088 Eucalyptus grandis HOM05D005415 ORTHO05D006242 4.4e-67 259.6 530 36.2
unitig_8.g4692 Utricularia gibba HOM05D005415 ORTHO05D006242 1.7e-66 257.7 515 37.9
MELO3C026191.2 Cucumis melo HOM05D005415 ORTHO05D006242 6.3e-66 255.8 495 36.8
Cc10_g14800 Coffea canephora HOM05D005415 ORTHO05D006242 1.1e-65 255.0 538 36.2
Aa31LG1G18400 Aethionema arabicum HOM05D005415 ORTHO05D006242 1.8e-65 254.2 532 37.0
AT5G63540 Arabidopsis thaliana HOM05D005415 ORTHO05D006242 2.4e-65 253.8 543 35.9
CARHR277400 Cardamine hirsuta HOM05D005415 ORTHO05D006242 3.1e-65 253.4 494 37.7
AL8G40620 Arabidopsis lyrata HOM05D005415 ORTHO05D006242 4.1e-65 253.1 534 35.0
Hund02456 Selenicereus undatus HOM05D005415 ORTHO05D006242 4.1e-65 253.1 514 34.6
GSVIVG01008582001 Vitis vinifera HOM05D005415 ORTHO05D006242 4.1e-65 253.1 514 34.0
Phvul.002G284900 Phaseolus vulgaris HOM05D005415 ORTHO05D006242 1.2e-64 251.5 552 33.5
Cpa.g.sc4.162 Carica papaya HOM05D005415 ORTHO05D006242 2.7e-64 250.4 439 37.4
Migut.I00557 Erythranthe guttata HOM05D005415 ORTHO05D006242 2.7e-64 250.4 554 34.3
Sp2g26630 Schrenkiella parvula HOM05D005415 ORTHO05D006242 3.5e-64 250.0 493 37.3
AagrBONN_evm.TU.Sc2ySwM_117.2504 Anthoceros agrestis HOM05D005415 ORTHO05D006242 4.5e-64 249.6 513 35.7
Cfa018765 Carpinus fangiana HOM05D005415 ORTHO05D006242 5.9e-64 249.2 461 35.4
HanXRQChr09g0273461 Helianthus annuus HOM05D005415 ORTHO05D006242 1.0e-63 248.4 541 32.9
Thhalv10003815m.g Eutrema salsugineum HOM05D005415 ORTHO05D006242 1.7e-63 247.7 528 34.7
SalBow5G0795 Salvia bowleyana HOM05D005415 ORTHO05D006242 1.7e-63 247.7 542 35.4
PGSC0003DMG400013896 Solanum tuberosum HOM05D005415 ORTHO05D006242 5.0e-63 246.1 546 33.9
BcaB04g19924 Brassica carinata HOM05D005415 ORTHO05D006242 8.5e-63 245.4 528 34.5
SGA_v2.0_scaffold414G51200 Striga asiatica HOM05D005415 ORTHO05D006242 8.5e-63 245.4 556 34.2
RcHm_v2.0_Chr7g0189541 Rosa chinensis HOM05D005415 ORTHO05D006242 1.1e-62 245.0 544 34.6
Pp3c4_19920 Physcomitrium patens HOM05D005415 ORTHO05D006242 1.5e-62 244.6 574 33.3
BcaC04g23337 Brassica carinata HOM05D005415 ORTHO05D006242 4.2e-62 243.0 490 37.6
PGR083G0902 Punica granatum HOM05D005415 ORTHO05D006242 4.2e-62 243.0 520 34.4
Sopen12g001850 Solanum pennellii HOM05D005415 ORTHO05D006242 4.2e-62 243.0 540 33.9
Lsat_1_v5_gn_4_82521 Lactuca sativa HOM05D005415 ORTHO05D006242 2.7e-61 240.4 540 32.2
SMO146G0246 Selaginella moellendorffii HOM05D025663 ORTHO05D006242 3.6e-61 240.0 280 55.0
VMungo0251G3541 Vigna mungo HOM05D005415 ORTHO05D006242 8.0e-61 238.8 591 31.3
C09p09400 Brassica napus HOM05D005415 ORTHO05D006242 1.0e-60 238.4 491 37.5
Solyc12g005900.3 Solanum lycopersicum HOM05D005415 ORTHO05D006242 1.8e-60 237.7 543 33.0
Nitab4.5_0001213g0090 Nicotiana tabacum HOM05D005415 ORTHO05D006242 3.0e-60 236.9 548 33.6
EL10Ac5g11383 Beta vulgaris HOM05D005415 ORTHO05D006242 4.0e-60 236.5 465 36.3
Actinidia18334 Actinidia chinensis HOM05D005415 ORTHO05D006242 8.8e-60 235.3 536 32.6
Zm00001eb085270 Zea mays HOM05D005415 ORTHO05D006242 8.8e-60 235.3 496 36.5
A09p08330 Brassica napus HOM05D005415 ORTHO05D006242 1.2e-59 235.0 498 35.1
Mapoly0147s0014 Marchantia polymorpha HOM05D005415 ORTHO05D006242 7.5e-59 232.3 636 29.9
AUR62043951 Chenopodium quinoa HOM05D005415 ORTHO05D006242 2.8e-58 230.3 440 36.1
FAN26G2295 Fragaria x ananassa HOM05D005415 ORTHO05D006242 4.8e-58 229.6 540 32.0
Haze_07175 Corylus avellana HOM05D005415 ORTHO05D006242 8.3e-58 228.8 392 37.2
FAN19G3201 Fragaria x ananassa HOM05D005415 ORTHO05D006242 1.1e-57 228.4 550 32.5
Rhsim08G0192500 Rhododendron simsii HOM05D005415 ORTHO05D006242 1.1e-57 228.4 469 34.3
MD14G1152700 Malus domestica HOM05D005415 ORTHO05D006242 2.4e-57 227.3 571 31.2
FvH4_1g26610 Fragaria vesca HOM05D005415 ORTHO05D006242 4.1e-57 226.5 550 32.4
AUR62038846 Chenopodium quinoa HOM05D005415 ORTHO05D006242 5.4e-57 226.1 476 34.0
HPP92_021709 Vanilla planifolia HOM05D005415 ORTHO05D006242 5.4e-57 226.1 498 32.7
FAN23G0140 Fragaria x ananassa HOM05D005415 ORTHO05D006242 2.0e-56 224.2 522 32.6
vmacro19135 Vaccinium macrocarpon HOM05D005415 ORTHO05D006242 2.0e-56 224.2 537 32.8
BraA09t36482Z Brassica rapa HOM05D005415 ORTHO05D006242 4.5e-56 223.0 535 33.1
BolC9t53852H Brassica oleracea HOM05D005415 ORTHO05D006242 7.7e-56 222.2 528 34.8
HPP92_021694 Vanilla planifolia HOM05D005415 ORTHO05D006242 1.0e-55 221.9 495 32.5
AUR62029576 Chenopodium quinoa HOM05D005415 ORTHO05D006242 2.3e-55 220.7 484 32.9
Prupe.5G147700 Prunus persica HOM05D005415 ORTHO05D006242 2.9e-55 220.3 553 32.5
FAN28G1156 Fragaria x ananassa HOM05D005415 ORTHO05D006242 3.8e-55 219.9 533 32.3
Nitab4.5_0003683g0010 Nicotiana tabacum HOM05D005415 ORTHO05D006242 3.8e-55 219.9 555 31.4
Glyma.08G010700 Glycine max HOM05D005415 ORTHO05D006242 8.6e-55 218.8 566 31.3
CANSAT25G2590 Cannabis sativa HOM05D005415 ORTHO05D006242 1.5e-54 218.0 562 31.7
CDE05G0217 Ceratophyllum demersum HOM05D005415 ORTHO05D006242 7.2e-54 215.7 592 29.4
arahy.Tifrunner.gnm1.ann1.NCF6IW Arachis hypogaea HOM05D005415 ORTHO05D006242 1.2e-53 214.9 570 30.4
ATR0582G259 Amborella trichopoda HOM05D005415 ORTHO05D006242 6.1e-53 212.6 270 48.1
ClCG06G018070 Citrullus lanatus HOM05D005415 ORTHO05D006242 2.3e-52 210.7 510 34.3
Nn4g22247 Nelumbo nucifera HOM05D005415 ORTHO05D006242 2.6e-51 207.2 402 36.6
Lj4g0026231 Lotus japonicus HOM05D005415 ORTHO05D006242 3.4e-51 206.8 653 28.3
Sopen05g009520 Solanum pennellii HOM05D005415 ORTHO05D006242 1.7e-50 204.5 539 31.4
ECA232G0893 Erigeron canadensis HOM05D005415 ORTHO05D006242 4.9e-50 203.0 659 27.6
Aqoxy3G01618 Aquilegia oxysepala HOM05D005415 ORTHO05D006242 1.1e-49 201.8 228 50.0
PSO017G0412 Papaver somniferum HOM05D005415 ORTHO05D006242 3.2e-49 200.3 624 28.8
arahy.Tifrunner.gnm1.ann1.MQVT4E Arachis hypogaea HOM05D005415 ORTHO05D006242 4.1e-49 199.9 598 28.8
DCAR_021639 Daucus carota HOM05D005415 ORTHO05D006242 5.4e-49 199.5 597 30.7
MBI07_g01996_MAGBIO Magnolia biondii HOM05D005415 ORTHO05D006242 7.0e-49 199.1 656 27.4
Lalb_Chr13g0297171 Lupinus albus HOM05D005415 ORTHO05D006242 1.2e-48 198.4 628 27.9
Manes.06G122000 Manihot esculenta HOM05D005415 ORTHO05D006242 2.7e-48 197.2 425 34.1
Actinidia25556 Actinidia chinensis HOM05D005415 ORTHO05D006242 5.9e-48 196.1 221 49.8
Gohir.A07G049320 Gossypium hirsutum HOM05D005415 ORTHO05D006242 6.6e-47 192.6 175 57.7
Os04g0391000 Oryza sativa ssp. japonica HOM05D005415 ORTHO05D006242 6.6e-47 192.6 256 44.9
PSO478G2612 Papaver somniferum HOM05D005415 ORTHO05D006242 1.9e-46 191.0 624 28.5
CSS0000208 Camellia sinensis var. sinensis HOM05D005415 ORTHO05D006242 2.8e-45 187.2 179 53.1
TPR.G12905 Trifolium pratense HOM05D005415 ORTHO05D006242 3.6e-45 186.8 216 49.1
Psat7g037120 Pisum sativum HOM05D005415 ORTHO05D006242 1.0e-44 185.3 664 27.3
Peaxi162Scf00047g00185 Petunia axillaris HOM05D005415 ORTHO05D006242 1.8e-44 184.5 698 27.2
Ah.11g045540 Amaranthus hybridus HOM05D005415 ORTHO05D006242 3.7e-42 176.8 450 28.9
SMO146G0197 Selaginella moellendorffii HOM05D025663 ORTHO05D006242 3.7e-42 176.8 289 46.0
Oeu030666.2 Olea europaea HOM05D005415 ORTHO05D006242 4.9e-42 176.4 290 40.7
Medtr8g096570 Medicago truncatula HOM05D005415 ORTHO05D006242 7.0e-41 172.6 650 25.7
Solyc05g014400.4 Solanum lycopersicum HOM05D005415 ORTHO05D006242 5.0e-39 166.4 436 31.0
SHI31561 Sapria himalayana HOM05D005415 ORTHO05D006242 1.5e-38 164.9 195 49.2
CAN.G2034.2 Capsicum annuum HOM05D005415 ORTHO05D006242 3.3e-38 163.7 438 31.7
CBR_g45436 Chara braunii HOM05D005415 ORTHO05D006242 3.4e-35 153.7 230 40.9
SMO173G0064 Selaginella moellendorffii HOM05D025663 ORTHO05D006242 1.1e-33 148.7 337 39.8
SMO173G0067 Selaginella moellendorffii HOM05D025663 ORTHO05D006242 1.1e-33 148.7 337 39.8
SMO173G0040 Selaginella moellendorffii HOM05D011677 ORTHO05D006242 3.0e-31 140.6 317 39.4
Cre17.g712450 Chlamydomonas reinhardtii HOM05D005415 ORTHO05D006242 5.8e-27 126.3 194 39.7
SHI10695 Sapria himalayana HOM05D005415 ORTHO05D006242 5.8e-27 126.3 137 51.8
MCO10G310 Micromonas commoda HOM05D005415 ORTHO05D006242 3.3e-22 110.5 229 36.7
PRCOL_00000625 Prasinoderma coloniale HOM05D005415 ORTHO05D006242 6.8e-20 102.8 143 43.4
TPR.G12965 Trifolium pratense HOM05D005415 ORTHO05D006242 9.9e-19 99.0 147 38.8
Gohir.A07G049360 Gossypium hirsutum HOM05D005415 ORTHO05D006242 1.1e-17 95.5 143 36.4
TAR629G1046 Trochodendron aralioides HOM05D005415 ORTHO05D006242 1.8e-12 78.2 124 35.5
TAR381G1645 Trochodendron aralioides HOM05D005415 ORTHO05D006242 5.3e-12 76.6 60 65.0
Medtr1g057810 Medicago truncatula HOM05D000559 ORTHO05D000596 3.4e-11 73.9 152 34.2
Medtr1g105150 Medicago truncatula HOM05D000559 ORTHO05D000596 3.4e-11 73.9 152 34.2
SEGI_11582 Sequoiadendron giganteum HOM05D005415 ORTHO05D006242 3.4e-11 73.9 80 41.2
BcaB08g36551 Brassica carinata HOM05D006752 ORTHO05D008597 4.4e-11 73.6 158 33.5
AL6G31480 Arabidopsis lyrata HOM05D006752 ORTHO05D008597 1.3e-10 72.0 159 32.1
PSO302G0032 Papaver somniferum HOM05D005415 ORTHO05D006242 1.3e-10 72.0 115 41.7
SHI10702 Sapria himalayana HOM05D005415 ORTHO05D006242 6.4e-10 69.7 81 42.0
BcaC04g19401 Brassica carinata HOM05D006752 ORTHO05D008597 1.1e-09 68.9 166 31.9
C09p56100 Brassica napus HOM05D006752 ORTHO05D008597 1.1e-09 68.9 166 31.9
BolC9t58477H Brassica oleracea HOM05D006752 ORTHO05D008597 1.1e-09 68.9 166 31.9
Sp6g24430 Schrenkiella parvula HOM05D006752 ORTHO05D008597 1.1e-09 68.9 175 29.7
SEGI_12458 Sequoiadendron giganteum HOM05D005415 ORTHO05D006242 1.1e-09 68.9 94 34.0
Hma1.2p1_0018F.1_g013060 Hydrangea macrophylla HOM05D006752 ORTHO05D008597 1.4e-09 68.6 102 37.3
Thhalv10013545m.g Eutrema salsugineum HOM05D006752 ORTHO05D008597 2.4e-09 67.8 175 29.7
Aa31LG8G9350 Aethionema arabicum HOM05D006752 ORTHO05D008597 5.4e-09 66.6 214 28.5
Gorai.010G068100 Gossypium raimondii HOM05D006752 ORTHO05D008597 5.4e-09 66.6 274 28.8
Phvul.009G200000 Phaseolus vulgaris HOM05D006752 ORTHO05D008597 5.4e-09 66.6 124 36.3
CARHR192900 Cardamine hirsuta HOM05D006752 ORTHO05D008597 9.3e-09 65.9 163 31.3
A10p19780 Brassica napus HOM05D006752 ORTHO05D008597 1.2e-08 65.5 159 32.1
BraA10t44054Z Brassica rapa HOM05D006752 ORTHO05D008597 1.2e-08 65.5 159 32.1
Actinidia20330 Actinidia chinensis HOM05D006752 ORTHO05D008597 2.1e-08 64.7 228 27.6
Glyma.06G211500 Glycine max HOM05D006752 ORTHO05D008597 2.1e-08 64.7 127 36.2
VMungo1309G1199 Vigna mungo HOM05D006752 ORTHO05D008597 3.5e-08 63.9 125 36.0
Gohir.D06G058000 Gossypium hirsutum HOM05D006752 ORTHO05D008597 4.6e-08 63.5 241 28.6
MD02G1061400 Malus domestica HOM05D006752 ORTHO05D008597 4.6e-08 63.5 196 29.1
AT5G19950 Arabidopsis thaliana HOM05D006752 ORTHO05D008597 7.9e-08 62.8 269 24.2
Lalb_Chr11g0071961 Lupinus albus HOM05D006752 ORTHO05D008597 7.9e-08 62.8 129 34.1
FAN26G3101 Fragaria x ananassa HOM05D006752 ORTHO05D008597 1.0e-07 62.4 271 27.7
Medtr2g050180 Medicago truncatula HOM05D006752 ORTHO05D008597 1.0e-07 62.4 133 35.3
TWI34G0637 Tripterygium wilfordii HOM05D006752 ORTHO05D008597 1.0e-07 62.4 134 35.1
arahy.Tifrunner.gnm1.ann1.TG1F9L Arachis hypogaea HOM05D006752 ORTHO05D008597 1.3e-07 62.0 77 46.8
PGR142G0135 Punica granatum HOM05D006752 ORTHO05D008597 1.3e-07 62.0 171 29.8
TPR.G10362 Trifolium pratense HOM05D006752 ORTHO05D008597 1.3e-07 62.0 102 41.2
Aqoxy7G01881 Aquilegia oxysepala HOM05D006752 ORTHO05D008597 1.7e-07 61.6 157 32.5
arahy.Tifrunner.gnm1.ann1.CJP391 Arachis hypogaea HOM05D006752 ORTHO05D008597 1.7e-07 61.6 77 48.1
Lsat_1_v5_gn_8_99581 Lactuca sativa HOM05D005415 ORTHO05D006242 1.7e-07 61.6 55 50.9
PSO478G1426 Papaver somniferum HOM05D005415 ORTHO05D006242 1.7e-07 61.6 303 24.4
Psat1g025400 Pisum sativum HOM05D006752 ORTHO05D008597 1.7e-07 61.6 130 35.4
Ca_05468_v3 Cicer arietinum L. HOM05D006752 ORTHO05D008597 2.3e-07 61.2 134 34.3
FAN28G1533 Fragaria x ananassa HOM05D006752 ORTHO05D008597 2.3e-07 61.2 271 26.9
Gohir.A06G059800 Gossypium hirsutum HOM05D006752 ORTHO05D008597 2.3e-07 61.2 276 28.3
PSO782G3782 Papaver somniferum HOM05D006752 ORTHO05D008597 3.9e-07 60.5 125 35.2
Lj1g0009545 Lotus japonicus HOM05D006752 ORTHO05D008597 5.1e-07 60.1 130 33.8
CANSAT56G2958 Cannabis sativa HOM05D006752 ORTHO05D008597 8.7e-07 59.3 326 25.8
HanXRQChr10g0317451 Helianthus annuus HOM05D006752 ORTHO05D008597 8.7e-07 59.3 127 34.6
Atru.chr7.1279 Acer truncatum HOM05D006752 ORTHO05D008597 1.1e-06 58.9 180 31.1
Eucgr.C01084 Eucalyptus grandis HOM05D006752 ORTHO05D008597 1.5e-06 58.5 185 29.7
SHI31560 Sapria himalayana HOM05D000002 ORTHO05D000001 1.5e-06 58.5 73 41.1
Lsat_1_v5_gn_4_20540 Lactuca sativa HOM05D005415 ORTHO05D006242 1.9e-06 58.2 48 54.2
CDE02G1475 Ceratophyllum demersum HOM05D006752 ORTHO05D008597 3.3e-06 57.4 126 33.3
FvH4_1g04220 Fragaria vesca HOM05D006752 ORTHO05D008597 3.3e-06 57.4 273 26.0
FAN19G2061 Fragaria x ananassa HOM05D006752 ORTHO05D008597 3.3e-06 57.4 273 26.0
GSVIVG01015454001 Vitis vinifera HOM05D006752 ORTHO05D008597 5.6e-06 56.6 103 35.0
AUR62033416 Chenopodium quinoa HOM05D006752 ORTHO05D008597 7.3e-06 56.2 70 44.3
SHI10696 Sapria himalayana HOM05D005415 ORTHO05D006242 7.3e-06 56.2 45 57.8
CBR_g41660 Chara braunii HOM05D001740 ORTHO05D001468 9.6e-06 55.8 129 31.8
Os01g0178100 Oryza sativa ssp. japonica HOM05D006752 ORTHO05D008597 9.6e-06 55.8 273 26.4
SalBow6G5676 Salvia bowleyana HOM05D006752 ORTHO05D008597 9.6e-06 55.8 202 28.7


User provided reference genes

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