Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO172G0003 Selaginella moellendorffii HOM05D004594 ORTHO05D005225 0.0e+00 1597.8 1032 100.0
Mapoly0102s0024 Marchantia polymorpha HOM05D004594 ORTHO05D005225 6.0e-136 489.6 879 43.9
Pp3c12_12730 Physcomitrium patens HOM05D004594 ORTHO05D005225 9.6e-134 482.3 900 41.7
Pp3c4_10880 Physcomitrium patens HOM05D004594 ORTHO05D005225 2.3e-119 434.5 865 40.0
AagrBONN_evm.TU.Sc2ySwM_340.1878 Anthoceros agrestis HOM05D004594 ORTHO05D005225 4.8e-109 400.2 876 39.7
CDE07G1889 Ceratophyllum demersum HOM05D004594 ORTHO05D005225 4.5e-75 287.3 832 30.3
SEGI_16638 Sequoiadendron giganteum HOM05D004594 ORTHO05D005225 1.1e-73 282.7 1099 33.5
Oeu044046.4 Olea europaea HOM05D004594 ORTHO05D005225 2.3e-66 258.5 1002 30.7
CBR_g5747 Chara braunii HOM05D004594 ORTHO05D005225 2.8e-64 251.5 568 40.3
A09p24110 Brassica napus HOM05D004594 ORTHO05D005225 3.0e-63 248.1 829 28.7
BraA09t38011Z Brassica rapa HOM05D004594 ORTHO05D005225 3.0e-63 248.1 829 28.7
ATR0564G229 Amborella trichopoda HOM05D004594 ORTHO05D005225 2.0e-62 245.4 1173 29.9
C09p31000 Brassica napus HOM05D004594 ORTHO05D005225 7.5e-62 243.4 837 28.0
Duzib248G1210 Durio zibethinus HOM05D004594 ORTHO05D005225 8.3e-61 240.0 1113 29.6
AUR62035342 Chenopodium quinoa HOM05D004594 ORTHO05D005225 1.1e-60 239.6 1057 32.7
CAN.G194.5 Capsicum annuum HOM05D004594 ORTHO05D005225 1.8e-60 238.8 937 25.5
Migut.E00588 Erythranthe guttata HOM05D004594 ORTHO05D005225 3.1e-60 238.0 945 27.2
BcaC04g21505 Brassica carinata HOM05D004594 ORTHO05D005225 5.4e-60 237.3 838 27.8
BolC9t55959H Brassica oleracea HOM05D004594 ORTHO05D005225 5.4e-60 237.3 838 27.8
Manes.01G034200 Manihot esculenta HOM05D004594 ORTHO05D005225 7.0e-60 236.9 1190 28.3
RcHm_v2.0_Chr4g0439441 Rosa chinensis HOM05D004594 ORTHO05D005225 7.0e-60 236.9 965 26.3
FAN17G1193 Fragaria x ananassa HOM05D004594 ORTHO05D005225 9.2e-60 236.5 950 26.0
FvH4_4g31060 Fragaria vesca HOM05D004594 ORTHO05D005225 1.2e-59 236.1 950 25.8
Nn1g04524 Nelumbo nucifera HOM05D004594 ORTHO05D005225 1.6e-59 235.7 1163 30.3
Zm00001eb384230 Zea mays HOM05D004594 ORTHO05D005225 2.0e-59 235.3 939 27.1
EL10Ac3g06731 Beta vulgaris HOM05D004594 ORTHO05D005225 5.9e-59 233.8 1160 29.8
CDE04G0114 Ceratophyllum demersum HOM05D004594 ORTHO05D005225 5.9e-59 233.8 829 27.5
Sp2g14100 Schrenkiella parvula HOM05D004594 ORTHO05D005225 1.3e-58 232.6 878 27.3
AUR62035898 Chenopodium quinoa HOM05D004594 ORTHO05D005225 2.3e-58 231.9 1151 28.3
Lsat_1_v5_gn_8_32581 Lactuca sativa HOM05D004594 ORTHO05D005225 8.6e-58 229.9 961 31.1
GSVIVG01019950001 Vitis vinifera HOM05D004594 ORTHO05D005225 8.6e-58 229.9 1148 28.0
Thecc.02G342500 Theobroma cacao HOM05D004594 ORTHO05D005225 1.1e-57 229.6 1129 30.3
AL5G12800 Arabidopsis lyrata HOM05D004594 ORTHO05D005225 2.5e-57 228.4 883 27.1
HanXRQChr14g0429131 Helianthus annuus HOM05D004594 ORTHO05D005225 5.6e-57 227.3 848 28.8
Sopen04g003850 Solanum pennellii HOM05D004594 ORTHO05D005225 5.6e-57 227.3 1130 27.1
CANSAT64G0453 Cannabis sativa HOM05D004594 ORTHO05D005225 7.3e-57 226.9 976 26.6
CARHR145490 Cardamine hirsuta HOM05D004594 ORTHO05D005225 2.1e-56 225.3 1156 29.1
Dinv02961 Davidia involucrata HOM05D004594 ORTHO05D005225 2.1e-56 225.3 1148 27.3
Manes.05G104800 Manihot esculenta HOM05D004594 ORTHO05D005225 2.1e-56 225.3 1145 28.6
BcaB07g30683 Brassica carinata HOM05D004594 ORTHO05D005225 2.8e-56 224.9 1087 30.8
CiPaw.06G087400 Carya illinoinensis HOM05D004594 ORTHO05D005225 2.8e-56 224.9 1132 27.7
AT2G03150 Arabidopsis thaliana HOM05D004594 ORTHO05D005225 8.0e-56 223.4 897 26.6
FAN07G2218 Fragaria x ananassa HOM05D004594 ORTHO05D005225 8.0e-56 223.4 1139 27.6
HanXRQChr08g0224741 Helianthus annuus HOM05D004594 ORTHO05D005225 8.0e-56 223.4 1048 30.1
Cc00_g08470 Coffea canephora HOM05D004594 ORTHO05D005225 1.0e-55 223.0 936 25.9
TAR629G1990 Trochodendron aralioides HOM05D004594 ORTHO05D005225 2.3e-55 221.9 1180 27.9
CiPaw.05G132100 Carya illinoinensis HOM05D004594 ORTHO05D005225 1.2e-54 219.5 466 41.8
MD16G1069300 Malus domestica HOM05D004594 ORTHO05D005225 1.5e-54 219.2 1208 28.5
FAN12G0764 Fragaria x ananassa HOM05D004594 ORTHO05D005225 3.4e-54 218.0 975 24.8
Lalb_Chr10g0098431 Lupinus albus HOM05D004594 ORTHO05D005225 4.4e-54 217.6 1023 24.1
Medtr5g042000 Medicago truncatula HOM05D004594 ORTHO05D005225 9.8e-54 216.5 261 45.2
MBI06_g33529_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 1.3e-53 216.1 471 43.3
Hund25219 Selenicereus undatus HOM05D004594 ORTHO05D005225 1.7e-53 215.7 1185 29.6
FAN22G0563 Fragaria x ananassa HOM05D004594 ORTHO05D005225 2.2e-53 215.3 1132 27.2
PGR119G1944 Punica granatum HOM05D004594 ORTHO05D005225 2.2e-53 215.3 944 25.8
QL03p068116 Quercus lobata HOM05D004594 ORTHO05D005225 2.2e-53 215.3 978 24.0
ECA233G5935 Erigeron canadensis HOM05D004594 ORTHO05D005225 3.7e-53 214.5 1112 29.1
Sed0022637 Sechium edule HOM05D004594 ORTHO05D005225 3.7e-53 214.5 965 24.8
Solyc04g008680.4 Solanum lycopersicum HOM05D004594 ORTHO05D005225 8.3e-53 213.4 1118 26.9
Carub.0005s0198 Capsella rubella HOM05D004594 ORTHO05D005225 1.8e-52 212.2 1161 29.2
TWI79G0308 Tripterygium wilfordii HOM05D004594 ORTHO05D005225 2.4e-52 211.8 1190 28.9
CsaV3_5G025180 Cucumis sativus L. HOM05D004594 ORTHO05D005225 3.2e-52 211.5 1006 24.3
Eucgr.G02485 Eucalyptus grandis HOM05D004594 ORTHO05D005225 5.4e-52 210.7 977 25.8
Potri.010G166100 Populus trichocarpa HOM05D004594 ORTHO05D005225 5.4e-52 210.7 1216 29.2
HanXRQChr17g0540651 Helianthus annuus HOM05D004594 ORTHO05D005225 9.2e-52 209.9 293 43.3
DCAR_013185 Daucus carota HOM05D004594 ORTHO05D005225 1.2e-51 209.5 1164 27.5
Lj2g0016635 Lotus japonicus HOM05D004594 ORTHO05D005225 1.2e-51 209.5 473 42.7
Aqoxy3G03454 Aquilegia oxysepala HOM05D004594 ORTHO05D005225 1.6e-51 209.1 1184 29.6
Ciclev10030522m.g Citrus clementina HOM05D004594 ORTHO05D005225 2.0e-51 208.8 505 40.0
TWI75G1472 Tripterygium wilfordii HOM05D004594 ORTHO05D005225 2.7e-51 208.4 1212 28.5
Sc11g0002090 Simmondsia chinensis HOM05D004594 ORTHO05D005225 3.5e-51 208.0 475 43.2
Gohir.1Z049516 Gossypium hirsutum HOM05D004594 ORTHO05D005225 6.0e-51 207.2 277 41.9
Phvul.003G045700 Phaseolus vulgaris HOM05D004594 ORTHO05D005225 6.0e-51 207.2 1196 27.8
Ca_04825_v3 Cicer arietinum L. HOM05D004594 ORTHO05D005225 1.0e-50 206.5 1187 28.6
THA.LOC104824075 Tarenaya hassleriana HOM05D004594 ORTHO05D005225 1.0e-50 206.5 908 29.0
Cfa008959 Carpinus fangiana HOM05D004594 ORTHO05D005225 2.3e-50 205.3 1177 28.2
Nitab4.5_0001419g0070 Nicotiana tabacum HOM05D004594 ORTHO05D005225 5.0e-50 204.1 495 39.0
PSO832G1080 Papaver somniferum HOM05D004594 ORTHO05D005225 5.0e-50 204.1 1125 27.4
Actinidia11790 Actinidia chinensis HOM05D004594 ORTHO05D005225 6.6e-50 203.8 1219 26.7
Psat2g116320 Pisum sativum HOM05D004594 ORTHO05D005225 1.1e-49 203.0 1430 26.9
Nitab4.5_0000129g0280 Nicotiana tabacum HOM05D004594 ORTHO05D005225 1.5e-49 202.6 1133 28.1
Lsat_1_v5_gn_3_33900 Lactuca sativa HOM05D004594 ORTHO05D005225 2.5e-49 201.8 933 27.9
PSO013G0146 Papaver somniferum HOM05D004594 ORTHO05D005225 4.3e-49 201.1 1124 28.3
Zm00001eb277410 Zea mays HOM05D004594 ORTHO05D005225 5.6e-49 200.7 895 25.3
arahy.Tifrunner.gnm1.ann1.KB2NSX Arachis hypogaea HOM05D004594 ORTHO05D005225 9.5e-49 199.9 961 25.2
Atru.chr11.1750 Acer truncatum HOM05D004594 ORTHO05D005225 1.6e-48 199.1 492 42.1
Gohir.D04G191200 Gossypium hirsutum HOM05D004594 ORTHO05D005225 2.8e-48 198.4 1172 29.6
Glyma.02G109900 Glycine max HOM05D004594 ORTHO05D005225 4.7e-48 197.6 1237 27.6
MELO3C002967.2 Cucumis melo HOM05D004594 ORTHO05D005225 6.2e-48 197.2 1000 25.5
Peaxi162Scf00329g00617 Petunia axillaris HOM05D004594 ORTHO05D005225 6.2e-48 197.2 1152 29.2
Rhsim09G0077000 Rhododendron simsii HOM05D004594 ORTHO05D005225 2.3e-47 195.3 448 40.6
Gorai.012G186600 Gossypium raimondii HOM05D004594 ORTHO05D005225 5.2e-47 194.1 1170 28.6
Glyma.01G051400 Glycine max HOM05D004594 ORTHO05D005225 8.9e-47 193.4 1203 26.9
ClCG09G021930 Citrullus lanatus HOM05D004594 ORTHO05D005225 4.4e-46 191.0 1036 24.7
arahy.Tifrunner.gnm1.ann1.8R27D6 Arachis hypogaea HOM05D004594 ORTHO05D005225 1.3e-45 189.5 1229 27.2
ECA246G2651 Erigeron canadensis HOM05D004594 ORTHO05D005225 1.3e-45 189.5 1012 24.3
TAR371G0293 Trochodendron aralioides HOM05D004594 ORTHO05D005225 1.3e-45 189.5 1139 28.8
TPR.G34709 Trifolium pratense HOM05D004594 ORTHO05D005225 2.2e-45 188.7 745 35.8
VMungo1215G3128 Vigna mungo HOM05D004594 ORTHO05D005225 4.9e-45 187.6 1192 27.2
Aa31LG2G7300 Aethionema arabicum HOM05D004594 ORTHO05D005225 1.9e-44 185.7 292 38.7
SGA_v2.0_scaffold140G35452 Striga asiatica HOM05D004594 ORTHO05D005225 1.9e-44 185.7 1179 27.1
Thhalv10005550m.g Eutrema salsugineum HOM05D004594 ORTHO05D005225 3.2e-44 184.9 926 24.7
Sabra10G0126400 Salix brachista HOM05D004594 ORTHO05D005225 7.0e-44 183.7 1246 28.2
Haze_11988 Corylus avellana HOM05D004594 ORTHO05D005225 1.6e-43 182.6 1260 27.0
HanXRQChr08g0225211 Helianthus annuus HOM05D004594 ORTHO05D005225 8.6e-42 176.8 928 24.8
SHI24774 Sapria himalayana HOM05D004594 ORTHO05D005225 5.6e-41 174.1 332 34.9
Ah.13g075020 Amaranthus hybridus HOM05D004594 ORTHO05D005225 9.5e-41 173.3 1130 28.4
C02p51140 Brassica napus HOM05D004594 ORTHO05D005225 3.1e-39 168.3 950 26.0
Prupe.1G277900 Prunus persica HOM05D004594 ORTHO05D005225 4.1e-36 157.9 1188 26.3
Cpa.g.sc25.130 Carica papaya HOM05D004594 ORTHO05D005225 9.2e-36 156.8 961 24.1
HPP92_001998 Vanilla planifolia HOM05D004594 ORTHO05D005225 1.0e-34 153.3 619 24.7
CBR_g5749 Chara braunii HOM05D004594 ORTHO05D005225 2.4e-31 142.1 257 44.0
unitig_52.g17301 Utricularia gibba HOM05D004594 ORTHO05D005225 8.4e-29 133.7 326 31.0
Atru.chr11.1748 Acer truncatum HOM05D004594 ORTHO05D005225 1.5e-25 122.9 370 36.2
BcaC03g17185 Brassica carinata HOM05D004594 ORTHO05D005225 1.3e-21 109.8 494 29.1
Gohir.A04G146601 Gossypium hirsutum HOM05D004594 ORTHO05D005225 1.6e-19 102.8 359 44.0
Lj3E852T1 Lonicera japonica HOM05D004594 ORTHO05D005225 1.6e-19 102.8 143 40.6
BolC2t11204H Brassica oleracea HOM05D004594 ORTHO05D005225 6.2e-16 90.9 499 23.0
Oeu032954.1 Olea europaea HOM05D004594 ORTHO05D005225 2.4e-15 89.0 93 47.3
Gohir.1Z049616 Gossypium hirsutum HOM05D004594 ORTHO05D005225 1.2e-14 86.7 82 50.0
Lj3A852T53 Lonicera japonica HOM05D004594 ORTHO05D005225 2.0e-14 85.9 85 47.1
Cre06.g283634 Chlamydomonas reinhardtii HOM05D004594 ORTHO05D005225 5.8e-14 84.3 542 21.6
unitig_52.g17300 Utricularia gibba HOM05D004594 ORTHO05D005225 4.9e-13 81.3 434 25.8
vmacro10769 Vaccinium macrocarpon HOM05D004594 ORTHO05D005225 1.9e-12 79.3 346 30.3
Oeu034639.1 Olea europaea HOM05D004594 ORTHO05D005225 4.2e-12 78.2 195 33.8
Lj3E852G2 Lonicera japonica HOM05D004594 ORTHO05D005225 6.0e-11 74.3 156 41.0
TPR.G11445 Trifolium pratense HOM05D004594 ORTHO05D005225 1.3e-10 73.2 57 52.6
HPP92_001999 Vanilla planifolia HOM05D004594 ORTHO05D005225 1.5e-09 69.7 63 61.9
Rhsim04G0150600 Rhododendron simsii HOM05D004594 ORTHO05D005225 2.8e-08 65.5 116 37.1
MBI05_g14664_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 3.1e-07 62.0 50 54.0
Lsat_1_v5_gn_4_108040 Lactuca sativa HOM05D004594 ORTHO05D005225 6.9e-07 60.8 61 47.5
MBI02_g24139_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 4.5e-06 58.2 72 43.1
Lsat_1_v5_gn_3_92661 Lactuca sativa HOM05D004594 ORTHO05D005225 9.9e-06 57.0 98 37.8


User provided reference genes

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