Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO169G0122 Selaginella moellendorffii HOM05D004883 ORTHO05D005766 3.7e-64 248.1 126 100.0
SEGI_37934 Sequoiadendron giganteum HOM05D004883 ORTHO05D005766 6.4e-48 194.1 125 76.0
Pp3c24_4700 Physcomitrium patens HOM05D004883 ORTHO05D005766 7.0e-47 190.7 125 74.4
Mapoly0033s0053 Marchantia polymorpha HOM05D004883 ORTHO05D005766 2.7e-46 188.7 123 74.8
PSO210G0389 Papaver somniferum HOM05D004883 ORTHO05D005766 1.5e-44 183.0 120 73.3
PSO170G5588 Papaver somniferum HOM05D004883 ORTHO05D005766 4.3e-44 181.4 120 72.5
Os06g0211300 Oryza sativa ssp. japonica HOM05D004883 ORTHO05D005766 9.5e-44 180.3 122 68.9
CDE08G1634 Ceratophyllum demersum HOM05D004883 ORTHO05D005766 2.1e-43 179.1 119 72.3
ATR1102G009 Amborella trichopoda HOM05D004883 ORTHO05D005766 3.6e-43 178.3 120 73.3
Nn1g04858 Nelumbo nucifera HOM05D004883 ORTHO05D005766 1.8e-42 176.0 124 68.5
Os02g0765800 Oryza sativa ssp. japonica HOM05D004883 ORTHO05D005766 3.1e-42 175.3 122 68.9
Actinidia38058 Actinidia chinensis HOM05D004883 ORTHO05D005766 4.4e-41 171.4 125 68.8
Aqoxy5G01236 Aquilegia oxysepala HOM05D004883 ORTHO05D005766 4.4e-41 171.4 120 70.8
MSTRG.1348 Avicennia marina HOM05D004883 ORTHO05D005766 2.2e-40 169.1 125 67.2
HanXRQChr14g0439621 Helianthus annuus HOM05D004883 ORTHO05D005766 2.2e-40 169.1 119 69.7
TAR381G1103 Trochodendron aralioides HOM05D004883 ORTHO05D005766 2.9e-40 168.7 125 67.2
Dinv35960 Davidia involucrata HOM05D004883 ORTHO05D005766 3.7e-40 168.3 125 67.2
PGR031G0707 Punica granatum HOM05D004883 ORTHO05D005766 4.9e-40 167.9 120 69.2
HanXRQChr05g0150871 Helianthus annuus HOM05D004883 ORTHO05D005766 6.4e-40 167.5 121 69.4
Rhsim07G0228400 Rhododendron simsii HOM05D004883 ORTHO05D005766 6.4e-40 167.5 125 65.6
Cpa.g.sc49.21 Carica papaya HOM05D004883 ORTHO05D005766 8.3e-40 167.2 121 68.6
ECA232G2590 Erigeron canadensis HOM05D004883 ORTHO05D005766 8.3e-40 167.2 125 66.4
Lsat_1_v5_gn_6_112040 Lactuca sativa HOM05D004883 ORTHO05D005766 8.3e-40 167.2 120 68.3
Oeu057282.1 Olea europaea HOM05D004883 ORTHO05D005766 1.1e-39 166.8 125 64.8
CiPaw.16G043800 Carya illinoinensis HOM05D004883 ORTHO05D005766 1.4e-39 166.4 120 70.8
Hma1.2p1_0982F.1_g244010 Hydrangea macrophylla HOM05D004883 ORTHO05D005766 1.4e-39 166.4 125 68.0
Aa31LG9G12950 Aethionema arabicum HOM05D004883 ORTHO05D005766 1.9e-39 166.0 120 68.3
vmacro04449 Vaccinium macrocarpon HOM05D004883 ORTHO05D005766 1.9e-39 166.0 125 65.6
SalBow7G2082 Salvia bowleyana HOM05D004883 ORTHO05D005766 2.4e-39 165.6 121 66.9
GSVIVG01009495001 Vitis vinifera HOM05D004883 ORTHO05D005766 2.4e-39 165.6 125 65.6
ECA246G2602 Erigeron canadensis HOM05D004883 ORTHO05D005766 3.2e-39 165.2 125 64.8
Solyc04g078920.3 Solanum lycopersicum HOM05D004883 ORTHO05D005766 3.2e-39 165.2 121 66.9
Lsat_1_v5_gn_4_125820 Lactuca sativa HOM05D004883 ORTHO05D005766 4.1e-39 164.9 121 68.6
arahy.Tifrunner.gnm1.ann1.09A9GY Arachis hypogaea HOM05D004883 ORTHO05D005766 5.4e-39 164.5 124 66.9
arahy.Tifrunner.gnm1.ann1.B0E7W8 Arachis hypogaea HOM05D004883 ORTHO05D005766 5.4e-39 164.5 124 66.9
Sopen04g032520 Solanum pennellii HOM05D004883 ORTHO05D005766 7.1e-39 164.1 121 66.9
PGSC0003DMG400007973 Solanum tuberosum HOM05D004883 ORTHO05D005766 7.1e-39 164.1 121 66.9
Atru.chr13.693 Acer truncatum HOM05D004883 ORTHO05D005766 9.2e-39 163.7 125 64.0
SalBow3G1199 Salvia bowleyana HOM05D004883 ORTHO05D005766 1.2e-38 163.3 121 66.9
BcaB07g31037 Brassica carinata HOM05D004883 ORTHO05D005766 1.6e-38 162.9 121 68.6
CSS0025959 Camellia sinensis var. sinensis HOM05D004883 ORTHO05D005766 1.6e-38 162.9 125 63.2
CSS0031938 Camellia sinensis var. sinensis HOM05D004883 ORTHO05D005766 1.6e-38 162.9 125 63.2
Lj5g0012185 Lotus japonicus HOM05D004883 ORTHO05D005766 1.6e-38 162.9 127 63.0
Oeu044836.1 Olea europaea HOM05D004883 ORTHO05D005766 1.6e-38 162.9 125 63.2
Sed0005554 Sechium edule HOM05D004883 ORTHO05D005766 1.6e-38 162.9 127 63.8
Cc10_g04160 Coffea canephora HOM05D004883 ORTHO05D005766 2.1e-38 162.5 120 66.7
CsaV3_4G034310 Cucumis sativus L. HOM05D004883 ORTHO05D005766 2.1e-38 162.5 127 63.8
Thhalv10003291m.g Eutrema salsugineum HOM05D004883 ORTHO05D005766 2.1e-38 162.5 119 69.7
Psat1g147680 Pisum sativum HOM05D004883 ORTHO05D005766 2.7e-38 162.2 125 64.8
THA.LOC104822849 Tarenaya hassleriana HOM05D004883 ORTHO05D005766 2.7e-38 162.2 121 68.6
COL.COLO4_26509 Corchorus olitorius HOM05D004883 ORTHO05D005766 3.5e-38 161.8 121 67.8
Glyma.14G082800 Glycine max HOM05D004883 ORTHO05D005766 3.5e-38 161.8 121 66.1
Peaxi162Scf00010g00308 Petunia axillaris HOM05D004883 ORTHO05D005766 3.5e-38 161.8 121 66.9
AT5G42890 Arabidopsis thaliana HOM05D004883 ORTHO05D005766 4.6e-38 161.4 121 66.9
Migut.C00579 Erythranthe guttata HOM05D004883 ORTHO05D005766 4.6e-38 161.4 125 64.0
Haze_17525 Corylus avellana HOM05D004883 ORTHO05D005766 6.0e-38 161.0 119 68.1
MD15G1083000 Malus domestica HOM05D004883 ORTHO05D005766 6.0e-38 161.0 125 63.2
BcaC04g21964 Brassica carinata HOM05D004883 ORTHO05D005766 7.8e-38 160.6 121 67.8
BcaC06g31741 Brassica carinata HOM05D004883 ORTHO05D005766 7.8e-38 160.6 121 67.8
A09p20040 Brassica napus HOM05D004883 ORTHO05D005766 7.8e-38 160.6 121 67.8
C09p25420 Brassica napus HOM05D004883 ORTHO05D005766 7.8e-38 160.6 121 67.8
BolC9t55441H Brassica oleracea HOM05D004883 ORTHO05D005766 7.8e-38 160.6 121 67.8
BraA09t37617Z Brassica rapa HOM05D004883 ORTHO05D005766 7.8e-38 160.6 121 67.8
CARHR181250 Cardamine hirsuta HOM05D004883 ORTHO05D005766 7.8e-38 160.6 121 67.8
Gorai.009G211700 Gossypium raimondii HOM05D004883 ORTHO05D005766 7.8e-38 160.6 121 66.9
Phvul.001G022000 Phaseolus vulgaris HOM05D004883 ORTHO05D005766 7.8e-38 160.6 125 63.2
Gohir.A01G119900 Gossypium hirsutum HOM05D004883 ORTHO05D005766 1.0e-37 160.2 121 66.9
QL02p004805 Quercus lobata HOM05D004883 ORTHO05D005766 1.0e-37 160.2 124 64.5
Sp2g07620 Schrenkiella parvula HOM05D004883 ORTHO05D005766 1.0e-37 160.2 119 68.9
Carub.0008s0602 Capsella rubella HOM05D004883 ORTHO05D005766 1.3e-37 159.8 121 66.9
Ciclev10002854m.g Citrus clementina HOM05D004883 ORTHO05D005766 1.3e-37 159.8 125 61.6
Migut.N02708 Erythranthe guttata HOM05D004883 ORTHO05D005766 1.3e-37 159.8 125 63.2
DCAR_020929 Daucus carota HOM05D004883 ORTHO05D005766 1.7e-37 159.5 121 64.5
TPR.G3781 Trifolium pratense HOM05D004883 ORTHO05D005766 1.7e-37 159.5 121 66.9
Gohir.D05G205400 Gossypium hirsutum HOM05D004883 ORTHO05D005766 2.3e-37 159.1 121 66.9
Prupe.1G435500 Prunus persica HOM05D004883 ORTHO05D005766 2.3e-37 159.1 125 62.4
THA.LOC104814168 Tarenaya hassleriana HOM05D004883 ORTHO05D005766 2.3e-37 159.1 121 66.9
AL8G18060 Arabidopsis lyrata HOM05D004883 ORTHO05D005766 3.9e-37 158.3 121 65.3
DCAR_012777 Daucus carota HOM05D004883 ORTHO05D005766 3.9e-37 158.3 121 66.9
Gohir.D01G108200 Gossypium hirsutum HOM05D004883 ORTHO05D005766 3.9e-37 158.3 120 65.8
Lalb_Chr22g0355131 Lupinus albus HOM05D004883 ORTHO05D005766 3.9e-37 158.3 125 62.4
ClCG05G019880 Citrullus lanatus HOM05D004883 ORTHO05D005766 5.1e-37 157.9 127 62.2
Gorai.002G132400 Gossypium raimondii HOM05D004883 ORTHO05D005766 5.1e-37 157.9 121 66.1
Thecc.08G007300 Theobroma cacao HOM05D004883 ORTHO05D005766 5.1e-37 157.9 121 66.9
TWI36G0538 Tripterygium wilfordii HOM05D004883 ORTHO05D005766 5.1e-37 157.9 124 61.3
VMungo0647G0758 Vigna mungo HOM05D004883 ORTHO05D005766 5.1e-37 157.9 125 62.4
MD08G1101600 Malus domestica HOM05D004883 ORTHO05D005766 6.6e-37 157.5 125 62.4
Ca_13291_v3 Cicer arietinum L. HOM05D004883 ORTHO05D005766 8.6e-37 157.1 125 60.8
Medtr1g019430 Medicago truncatula HOM05D004883 ORTHO05D005766 8.6e-37 157.1 121 64.5
Glyma.17G242300 Glycine max HOM05D004883 ORTHO05D005766 1.5e-36 156.4 121 64.5
Ah.09g236860 Amaranthus hybridus HOM05D004883 ORTHO05D005766 2.5e-36 155.6 120 63.3
Duzib093G0126 Durio zibethinus HOM05D004883 ORTHO05D005766 2.5e-36 155.6 110 70.9
Sc02g0007090 Simmondsia chinensis HOM05D004883 ORTHO05D005766 2.5e-36 155.6 125 62.4
AUR62012534 Chenopodium quinoa HOM05D004883 ORTHO05D005766 4.3e-36 154.8 127 63.0
AUR62014661 Chenopodium quinoa HOM05D004883 ORTHO05D005766 4.3e-36 154.8 127 63.0
AUR62044174 Chenopodium quinoa HOM05D004883 ORTHO05D005766 4.3e-36 154.8 127 63.0
Manes.05G174000 Manihot esculenta HOM05D004883 ORTHO05D005766 5.6e-36 154.5 119 64.7
FAN20G2534 Fragaria x ananassa HOM05D004883 ORTHO05D005766 7.3e-36 154.1 125 61.6
Gohir.A05G202300 Gossypium hirsutum HOM05D004883 ORTHO05D005766 7.3e-36 154.1 107 72.0
FAN27G2225 Fragaria x ananassa HOM05D004883 ORTHO05D005766 9.5e-36 153.7 124 61.3
Gohir.D06G016900 Gossypium hirsutum HOM05D004883 ORTHO05D005766 1.2e-35 153.3 121 62.8
Gorai.010G019800 Gossypium raimondii HOM05D004883 ORTHO05D005766 1.2e-35 153.3 121 62.8
FvH4_2g34441 Fragaria vesca HOM05D004883 ORTHO05D005766 1.6e-35 152.9 125 60.8
Hund21302 Selenicereus undatus HOM05D004883 ORTHO05D005766 1.6e-35 152.9 119 63.0
EL10Ac8g19960 Beta vulgaris HOM05D004883 ORTHO05D005766 2.1e-35 152.5 127 63.0
MELO3C016751.2 Cucumis melo HOM05D004883 ORTHO05D005766 2.8e-35 152.1 133 58.6
Eucgr.F02346 Eucalyptus grandis HOM05D004883 ORTHO05D005766 4.7e-35 151.4 155 54.2
MBI06_g02552_MAGBIO Magnolia biondii HOM05D004883 ORTHO05D005766 6.2e-35 151.0 119 65.5
TWI56G0859 Tripterygium wilfordii HOM05D004883 ORTHO05D005766 5.8e-33 144.4 124 55.6
CSS0006435 Camellia sinensis var. sinensis HOM05D004883 ORTHO05D005766 7.6e-33 144.1 124 58.9
RcHm_v2.0_Chr6g0307931 Rosa chinensis HOM05D004883 ORTHO05D005766 9.9e-33 143.7 125 56.8
TWI56G0476 Tripterygium wilfordii HOM05D004883 ORTHO05D005766 1.3e-32 143.3 124 55.6
FvH4_2g34440 Fragaria vesca HOM05D004883 ORTHO05D005766 3.7e-32 141.7 125 56.0
Duzib041G0234 Durio zibethinus HOM05D004883 ORTHO05D005766 5.4e-31 137.9 121 61.2
CANSAT35G0766 Cannabis sativa HOM05D004883 ORTHO05D005766 7.1e-31 137.5 116 55.2
Potri.002G126200 Populus trichocarpa HOM05D004883 ORTHO05D005766 7.1e-31 137.5 121 57.0
C03p39670 Brassica napus HOM05D004883 ORTHO05D005766 1.2e-30 136.7 106 67.0
Sabra02G0098900 Salix brachista HOM05D004883 ORTHO05D005766 1.2e-30 136.7 121 56.2
Hund23571 Selenicereus undatus HOM05D004883 ORTHO05D005766 2.1e-30 136.0 120 54.2
Nitab4.5_0000287g0320 Nicotiana tabacum HOM05D004883 ORTHO05D005766 3.5e-30 135.2 127 57.5
Nitab4.5_0003118g0020 Nicotiana tabacum HOM05D004883 ORTHO05D005766 6.0e-30 134.4 127 57.5
HPP92_013338 Vanilla planifolia HOM05D004883 ORTHO05D005766 6.0e-30 134.4 124 57.3
Potri.014G029300 Populus trichocarpa HOM05D004883 ORTHO05D005766 8.6e-29 130.6 120 55.0
Sabra14G0020100 Salix brachista HOM05D004883 ORTHO05D005766 8.6e-29 130.6 120 55.0
Manes.18G037300 Manihot esculenta HOM05D004883 ORTHO05D005766 1.5e-28 129.8 121 55.4
AagrBONN_evm.TU.Sc2ySwM_344.1976 Anthoceros agrestis HOM05D004883 ORTHO05D005766 1.8e-26 122.9 120 50.8
MD00G1215600 Malus domestica HOM05D004883 ORTHO05D005766 1.2e-25 120.2 105 56.2
BcaC09g50201 Brassica carinata HOM05D004883 ORTHO05D005766 5.8e-25 117.9 110 58.2
Peaxi162Scf00252g00711 Petunia axillaris HOM05D004883 ORTHO05D005766 1.9e-23 112.8 122 50.8
TAR625G0321 Trochodendron aralioides HOM05D004883 ORTHO05D005766 5.4e-23 111.3 97 57.7
Os01g0357200 Oryza sativa ssp. japonica HOM05D004883 ORTHO05D005766 1.3e-21 106.7 86 60.5
CAN.G371.3 Capsicum annuum HOM05D004883 ORTHO05D005766 5.6e-20 101.3 126 46.8
FAN15G1199 Fragaria x ananassa HOM05D004883 ORTHO05D005766 1.3e-19 100.1 83 59.0
BcaC01g04518 Brassica carinata HOM05D004883 ORTHO05D005766 2.8e-19 99.0 81 64.2
Nn5g30317 Nelumbo nucifera HOM05D004883 ORTHO05D005766 2.8e-19 99.0 124 49.2
CAN.G1139.16 Capsicum annuum HOM05D004883 ORTHO05D005766 1.1e-18 97.1 94 54.3
Actinidia29871 Actinidia chinensis HOM05D004883 ORTHO05D005766 1.4e-18 96.7 56 80.4
BolC9t59992H Brassica oleracea HOM05D004883 ORTHO05D005766 4.0e-18 95.1 99 54.5
EL10Ac7g17187 Beta vulgaris HOM05D004883 ORTHO05D005766 9.9e-17 90.5 83 57.8
EL10Ac4g09184 Beta vulgaris HOM05D004883 ORTHO05D005766 1.4e-15 86.7 121 43.0
Lj4A58G20 Lonicera japonica HOM05D000983 ORTHO05D005766 2.4e-15 85.9 60 70.0
BolC1t02723H Brassica oleracea HOM05D004883 ORTHO05D005766 5.1e-13 78.2 67 61.2
Gohir.A06G018633 Gossypium hirsutum HOM05D004883 ORTHO05D005766 7.4e-12 74.3 94 44.7
PRCOL_00003255 Prasinoderma coloniale HOM05D004883 ORTHO05D005766 1.6e-11 73.2 115 39.1
RcHm_v2.0_Chr5g0032801 Rosa chinensis HOM05D004883 ORTHO05D005766 3.1e-10 68.9 80 47.5
C01p27920 Brassica napus HOM05D004883 ORTHO05D005766 5.3e-10 68.2 102 46.1
unitig_32.g11126 Utricularia gibba HOM05D004883 ORTHO05D005766 4.5e-09 65.1 57 52.6
Cre14.g633550 Chlamydomonas reinhardtii HOM05D004883 ORTHO05D005766 2.2e-08 62.8 121 36.4
C09p72490 Brassica napus HOM05D004883 ORTHO05D005766 3.2e-07 58.9 42 64.3


User provided reference genes

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