Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO147G0005 Selaginella moellendorffii HOM05D003201 ORTHO05D008805 7.2e-130 467.2 232 100.0
SMO132G0004 Selaginella moellendorffii HOM05D003201 ORTHO05D008805 2.7e-105 385.6 247 81.8
Pp3c2_18510 Physcomitrium patens HOM05D003201 ORTHO05D008805 1.5e-63 246.9 258 50.0
Mapoly0007s0017 Marchantia polymorpha HOM05D003201 ORTHO05D008805 2.0e-63 246.5 257 51.4
CANSAT35G1729 Cannabis sativa HOM05D003201 ORTHO05D008805 6.4e-62 241.5 235 54.0
CARHR227170 Cardamine hirsuta HOM05D003201 ORTHO05D008805 4.1e-61 238.8 247 50.6
A01p12040 Brassica napus HOM05D003201 ORTHO05D008914 5.4e-61 238.4 242 52.9
C01p14340 Brassica napus HOM05D003201 ORTHO05D008914 7.1e-61 238.0 246 52.4
Carub.0007s2082 Capsella rubella HOM05D003201 ORTHO05D008805 9.2e-61 237.7 243 53.1
HanXRQChr17g0555621 Helianthus annuus HOM05D003201 ORTHO05D008805 1.6e-60 236.9 247 49.8
BraA01t01146Z Brassica rapa HOM05D003201 ORTHO05D008914 2.1e-60 236.5 242 53.3
Sp7g18690 Schrenkiella parvula HOM05D003201 ORTHO05D008805 3.5e-60 235.7 249 51.4
AL7G33540 Arabidopsis lyrata HOM05D003201 ORTHO05D008805 4.6e-60 235.3 244 51.6
ATR0068G091 Amborella trichopoda HOM05D003201 ORTHO05D008805 7.8e-60 234.6 245 48.6
ECA248G3933 Erigeron canadensis HOM05D003201 ORTHO05D008805 1.3e-59 233.8 245 51.0
SEGI_31075 Sequoiadendron giganteum HOM05D003201 ORTHO05D008805 1.3e-59 233.8 278 45.3
Lj2g0011105 Lotus japonicus HOM05D003201 ORTHO05D008805 3.0e-59 232.6 260 46.5
Medtr6g059320 Medicago truncatula HOM05D003201 ORTHO05D008805 3.9e-59 232.3 259 47.9
PSO339G6265 Papaver somniferum HOM05D003201 ORTHO05D008805 5.1e-59 231.9 268 46.3
PSO384G0221 Papaver somniferum HOM05D003201 ORTHO05D008805 6.6e-59 231.5 268 46.6
BolC1t01393H Brassica oleracea HOM05D000280 ORTHO05D004510 1.1e-58 230.7 250 50.8
Thhalv10026088m.g Eutrema salsugineum HOM05D003201 ORTHO05D008805 1.1e-58 230.7 249 49.8
Gohir.D09G114700 Gossypium hirsutum HOM05D003201 ORTHO05D008805 1.9e-58 229.9 262 48.1
CDE02G2127 Ceratophyllum demersum HOM05D003201 ORTHO05D008805 3.3e-58 229.2 268 46.6
THA.LOC104806236 Tarenaya hassleriana HOM05D003201 ORTHO05D008805 5.6e-58 228.4 253 47.4
Aqoxy5G03624 Aquilegia oxysepala HOM05D003201 ORTHO05D008805 7.3e-58 228.0 266 46.6
Psat1g112800 Pisum sativum HOM05D003201 ORTHO05D008805 7.3e-58 228.0 258 48.1
Migut.N00525 Erythranthe guttata HOM05D003201 ORTHO05D008805 1.6e-57 226.9 253 48.6
Thecc.05G124600 Theobroma cacao HOM05D003201 ORTHO05D008805 2.1e-57 226.5 256 46.5
Gohir.A09G117900 Gossypium hirsutum HOM05D003201 ORTHO05D008805 2.8e-57 226.1 262 47.3
Lalb_Chr01g0008671 Lupinus albus HOM05D003201 ORTHO05D008805 3.6e-57 225.7 261 47.1
TPR.G5800 Trifolium pratense HOM05D003201 ORTHO05D008805 8.1e-57 224.6 259 47.1
GSVIVG01034815001 Vitis vinifera HOM05D003201 ORTHO05D008805 1.4e-56 223.8 262 47.3
Cfa002302 Carpinus fangiana HOM05D003201 ORTHO05D008805 1.8e-56 223.4 258 48.8
TAR623G0449 Trochodendron aralioides HOM05D003201 ORTHO05D008805 1.8e-56 223.4 263 46.4
QL04p043008 Quercus lobata HOM05D003201 ORTHO05D008805 2.4e-56 223.0 257 48.2
Glyma.16G207100 Glycine max HOM05D003201 ORTHO05D008805 3.1e-56 222.6 262 45.4
VMungo0464G1483 Vigna mungo HOM05D003201 ORTHO05D008805 3.1e-56 222.6 256 47.3
Glyma.09G156400 Glycine max HOM05D003201 ORTHO05D008805 4.0e-56 222.2 262 45.8
Hma1.2p1_1133F.1_g260370 Hydrangea macrophylla HOM05D003201 ORTHO05D008805 4.0e-56 222.2 261 46.0
MBI13_g39202_MAGBIO Magnolia biondii HOM05D003201 ORTHO05D008805 4.0e-56 222.2 270 45.9
CSS0031904 Camellia sinensis var. sinensis HOM05D003201 ORTHO05D008805 5.2e-56 221.9 262 46.9
Phvul.004G131600 Phaseolus vulgaris HOM05D003201 ORTHO05D008805 5.2e-56 221.9 257 47.1
Hma1.2p1_1133F.1_g260360 Hydrangea macrophylla HOM05D003201 ORTHO05D008805 9.0e-56 221.1 262 45.8
Solyc01g057570.3 Solanum lycopersicum HOM05D003201 ORTHO05D008805 1.2e-55 220.7 258 45.7
Sopen01g022430 Solanum pennellii HOM05D003201 ORTHO05D008805 1.2e-55 220.7 258 45.7
Potri.013G161600 Populus trichocarpa HOM05D003201 ORTHO05D008805 2.0e-55 219.9 263 46.0
MELO3C024592.2 Cucumis melo HOM05D003201 ORTHO05D008805 3.4e-55 219.2 245 48.2
Dinv15525 Davidia involucrata HOM05D003201 ORTHO05D008805 4.4e-55 218.8 263 46.4
Sabra13G0129200 Salix brachista HOM05D003201 ORTHO05D008805 4.4e-55 218.8 263 45.6
Aa31LG6G2740 Aethionema arabicum HOM05D003201 ORTHO05D008914 9.9e-55 217.6 257 47.1
BcaC09g51346 Brassica carinata HOM05D003201 ORTHO05D008805 9.9e-55 217.6 190 59.5
ClCG01G015060 Citrullus lanatus HOM05D003201 ORTHO05D008805 9.9e-55 217.6 244 46.3
CsaV3_6G041170 Cucumis sativus L. HOM05D003201 ORTHO05D008805 9.9e-55 217.6 248 47.6
arahy.Tifrunner.gnm1.ann1.75P5EB Arachis hypogaea HOM05D003201 ORTHO05D008805 1.3e-54 217.2 187 58.3
AUR62000916 Chenopodium quinoa HOM05D003201 ORTHO05D008805 1.7e-54 216.9 257 45.1
TWI34G1882 Tripterygium wilfordii HOM05D003201 ORTHO05D008805 1.7e-54 216.9 258 46.1
Zm00001eb047810 Zea mays HOM05D003201 ORTHO05D008805 1.7e-54 216.9 272 43.8
FvH4_3g46100 Fragaria vesca HOM05D003201 ORTHO05D008805 2.9e-54 216.1 267 46.8
RcHm_v2.0_Chr5g0084171 Rosa chinensis HOM05D003201 ORTHO05D008805 3.8e-54 215.7 265 45.3
CAN.G431.2 Capsicum annuum HOM05D003201 ORTHO05D008805 4.9e-54 215.3 258 45.0
DCAR_028397 Daucus carota HOM05D003201 ORTHO05D008805 1.1e-53 214.2 260 44.6
Prupe.6G000300 Prunus persica HOM05D003201 ORTHO05D008805 1.1e-53 214.2 263 45.6
unitig_0.g1143 Utricularia gibba HOM05D003201 ORTHO05D008805 1.1e-53 214.2 231 48.9
Cc01_g05060 Coffea canephora HOM05D003201 ORTHO05D008805 1.9e-53 213.4 266 44.7
Sc18g0002730 Simmondsia chinensis HOM05D003201 ORTHO05D008805 2.4e-53 213.0 192 55.7
Peaxi162Scf01181g00210 Petunia axillaris HOM05D003201 ORTHO05D008805 3.2e-53 212.6 269 43.5
Actinidia16221 Actinidia chinensis HOM05D003201 ORTHO05D008805 7.1e-53 211.5 262 46.2
MD11G1000200 Malus domestica HOM05D003201 ORTHO05D008805 7.1e-53 211.5 264 44.7
HPP92_021155 Vanilla planifolia HOM05D003201 ORTHO05D008805 3.5e-52 209.1 258 45.7
vmacro04280 Vaccinium macrocarpon HOM05D003201 ORTHO05D008805 6.0e-52 208.4 277 46.6
MSTRG.12815 Avicennia marina HOM05D003201 ORTHO05D008805 1.7e-51 206.8 254 46.1
Lsat_1_v5_gn_1_71340 Lactuca sativa HOM05D003201 ORTHO05D008805 1.7e-51 206.8 181 55.8
SGA_v2.0_scaffold6G03334 Striga asiatica HOM05D003201 ORTHO05D008805 1.7e-51 206.8 276 44.2
EL10Ac4g09260 Beta vulgaris HOM05D003201 ORTHO05D008805 3.9e-51 205.7 292 40.1
arahy.Tifrunner.gnm1.ann1.F1EX5J Arachis hypogaea HOM05D003201 ORTHO05D008805 2.5e-50 203.0 207 51.7
Gorai.006G132500 Gossypium raimondii HOM05D003201 ORTHO05D008805 7.3e-50 201.4 184 54.3
Sed0008662 Sechium edule HOM05D003201 ORTHO05D008805 1.1e-48 197.6 250 44.4
Sopen01g019970 Solanum pennellii HOM05D003201 ORTHO05D008805 1.1e-48 197.6 258 43.4
PGR119G1272 Punica granatum HOM05D003201 ORTHO05D008805 3.1e-48 196.1 255 44.7
Os10g0420000 Oryza sativa ssp. japonica HOM05D003201 ORTHO05D008805 4.0e-48 195.7 189 51.9
Atru.chr2.209 Acer truncatum HOM05D003201 ORTHO05D008805 6.9e-48 194.9 182 52.2
Ciclev10029320m.g Citrus clementina HOM05D003201 ORTHO05D008805 4.9e-46 188.7 176 50.6
CiPaw.03G255400 Carya illinoinensis HOM05D003201 ORTHO05D008805 8.4e-46 188.0 223 48.0
Eucgr.J01718 Eucalyptus grandis HOM05D003201 ORTHO05D008805 7.9e-44 181.4 229 47.2
AUR62004843 Chenopodium quinoa HOM05D003201 ORTHO05D008805 4.0e-40 169.1 147 53.1
AT4G20350 Arabidopsis thaliana HOM05D003201 ORTHO05D008805 4.5e-39 165.6 190 50.0
FAN16G0934 Fragaria x ananassa HOM05D000104 ORTHO05D004363 4.9e-38 162.2 132 58.3
AUR62005054 Chenopodium quinoa HOM05D003201 ORTHO05D008805 6.7e-35 151.8 201 42.3
Haze_24508 Corylus avellana HOM05D003201 ORTHO05D008805 6.2e-33 145.2 196 44.9
FAN11G2508 Fragaria x ananassa HOM05D003201 ORTHO05D008805 2.4e-32 143.3 205 44.4
Nitab4.5_0000075g0050 Nicotiana tabacum HOM05D003201 ORTHO05D008805 1.5e-31 140.6 277 35.7
FAN25G0659 Fragaria x ananassa HOM05D003201 ORTHO05D008805 1.1e-29 134.4 196 44.4
Manes.18G121700 Manihot esculenta HOM05D003201 ORTHO05D008805 1.9e-29 133.7 195 45.1
MBI13_g36948_MAGBIO Magnolia biondii HOM05D003201 ORTHO05D008805 1.2e-28 131.0 137 52.6
SalBow3G4219 Salvia bowleyana HOM05D003201 ORTHO05D008805 6.0e-28 128.6 133 53.4
Cpa.g.sc30.50 Carica papaya HOM05D003201 ORTHO05D008805 1.0e-27 127.9 186 41.4
MCO03G055 Micromonas commoda HOM05D003201 ORTHO05D008805 3.0e-27 126.3 223 38.6
CBR_g45550 Chara braunii HOM05D000019 ORTHO05D000353 8.7e-27 124.8 105 52.4
Rhsim13G0235500 Rhododendron simsii HOM05D003201 ORTHO05D008805 2.2e-25 120.2 274 35.4
Duzib093G2193 Durio zibethinus HOM05D003201 ORTHO05D008805 1.1e-24 117.9 255 32.2
Cre14.g632791 Chlamydomonas reinhardtii HOM05D003201 ORTHO05D008805 5.9e-23 112.1 178 35.4
Nitab4.5_0005125g0010 Nicotiana tabacum HOM05D003201 ORTHO05D008805 1.0e-22 111.3 146 43.2
Hund07019 Selenicereus undatus HOM05D003201 ORTHO05D008805 1.9e-18 97.1 156 42.3
Ca_25246_v3 Cicer arietinum L. HOM05D003201 ORTHO05D008805 5.7e-18 95.5 152 41.4
Lj1A555G38 Lonicera japonica HOM05D003201 ORTHO05D008805 1.7e-17 94.0 157 36.9
Cfa026017 Carpinus fangiana HOM05D003201 ORTHO05D124792 8.2e-17 91.7 189 33.9
MCO08G131 Micromonas commoda HOM05D003201 ORTHO05D008805 1.4e-16 90.9 172 36.6
PGSC0003DMG400026601 Solanum tuberosum HOM05D003201 ORTHO05D008805 6.9e-16 88.6 158 37.3
FAN21G2623 Fragaria x ananassa HOM05D003201 ORTHO05D008805 8.5e-14 81.6 167 37.7
FAN11G4037 Fragaria x ananassa HOM05D003201 ORTHO05D008805 5.5e-13 79.0 64 53.1
COL.COLO4_24749 Corchorus olitorius HOM05D003201 ORTHO05D008805 6.1e-12 75.5 146 33.6
PRCOL_00004726 Prasinoderma coloniale HOM05D003201 ORTHO05D008805 1.8e-11 73.9 176 31.8
FAN25G1903 Fragaria x ananassa HOM05D003201 ORTHO05D008805 3.9e-11 72.8 64 51.6
DCAR_000711 Daucus carota HOM05D007105 ORTHO05D009304 5.7e-10 68.9 240 28.8
Os04g0602700 Oryza sativa ssp. japonica HOM05D007105 ORTHO05D009304 5.7e-10 68.9 190 31.1
BcaC07g37753 Brassica carinata HOM05D007105 ORTHO05D009304 3.1e-08 63.2 194 27.8
BolC8t48138H Brassica oleracea HOM05D007105 ORTHO05D009304 3.1e-08 63.2 194 27.8
BcaB04g18148 Brassica carinata HOM05D007105 ORTHO05D009304 4.1e-08 62.8 190 28.9
ClCG11G016210 Citrullus lanatus HOM05D007105 ORTHO05D009304 1.5e-07 60.8 195 28.7
PGSC0003DMG400029377 Solanum tuberosum HOM05D007105 ORTHO05D009304 1.5e-07 60.8 191 29.3
Lalb_Chr05g0215271 Lupinus albus HOM05D007105 ORTHO05D009304 2.0e-07 60.5 192 29.7
Sopen12g032090 Solanum pennellii HOM05D007105 ORTHO05D009304 2.6e-07 60.1 191 29.3
Nitab4.5_0006955g0010 Nicotiana tabacum HOM05D007105 ORTHO05D009304 4.5e-07 59.3 132 32.6
A08p10520 Brassica napus HOM05D007105 ORTHO05D006179 3.8e-06 56.2 132 31.1
BraA08t33052Z Brassica rapa HOM05D007105 ORTHO05D009304 3.8e-06 56.2 132 31.1
arahy.Tifrunner.gnm1.ann1.IELT58 Arachis hypogaea HOM05D006806 ORTHO05D008448 8.5e-06 55.1 176 26.7
CAN.G947.23 Capsicum annuum HOM05D007105 ORTHO05D009304 8.5e-06 55.1 132 31.1


User provided reference genes

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